Wall clock time and date at job start Mon Mar 30 2020 02:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34491 * 126.83437 * 2 1 4 4 N 1.36454 * 108.85348 * 180.25113 * 3 2 1 5 5 H 0.97000 * 124.84469 * 179.76573 * 4 3 2 6 6 C 1.34655 * 110.29786 * 359.74640 * 4 3 2 7 7 C 1.36768 * 108.39489 * 0.02562 * 6 4 3 8 8 C 1.47267 * 126.93440 * 179.97438 * 7 6 4 9 9 O 1.21631 * 119.99730 * 214.69700 * 8 7 6 10 10 N 1.34778 * 120.00424 * 34.69589 * 8 7 6 11 11 C 1.46496 * 119.99731 * 5.88306 * 10 8 7 12 12 C 1.46496 * 119.99812 * 185.87857 * 10 8 7 13 13 C 1.53778 * 113.68881 * 82.34685 * 12 10 8 14 14 C 1.53785 * 87.08246 * 89.12274 * 13 12 10 15 15 N 1.46500 * 113.61304 * 270.88509 * 14 13 12 16 16 C 1.36945 * 119.99775 * 185.83838 * 15 14 13 17 17 H 1.07997 * 119.99674 * 4.62310 * 16 15 14 18 18 C 1.38809 * 119.99732 * 184.62946 * 16 15 14 19 19 N 1.31618 * 119.99888 * 174.77523 * 18 16 15 20 20 Si 1.86802 * 120.00185 * 354.77969 * 18 16 15 21 21 H 1.48493 * 109.47262 * 94.99846 * 20 18 16 22 22 H 1.48499 * 109.46781 * 215.00090 * 20 18 16 23 23 H 1.48502 * 109.46769 * 334.99638 * 20 18 16 24 24 C 1.53772 * 87.08061 * 25.43400 * 14 13 12 25 25 H 1.08998 * 109.47324 * 270.15603 * 1 2 3 26 26 H 1.09008 * 109.46855 * 30.15116 * 1 2 3 27 27 H 1.09000 * 109.47270 * 150.14970 * 1 2 3 28 28 H 1.08005 * 125.57405 * 0.03570 * 3 2 1 29 29 H 1.07998 * 125.79433 * 180.02562 * 6 4 3 30 30 H 1.08997 * 109.47268 * 275.23485 * 11 10 8 31 31 H 1.09005 * 109.47467 * 35.23281 * 11 10 8 32 32 H 1.09003 * 109.47396 * 155.22976 * 11 10 8 33 33 H 1.09000 * 112.85765 * 311.07639 * 12 10 8 34 34 H 1.09004 * 113.61868 * 203.66857 * 13 12 10 35 35 H 1.08999 * 113.61604 * 334.57748 * 13 12 10 36 36 H 1.09007 * 113.69026 * 139.99379 * 14 13 12 37 37 H 0.96994 * 120.00460 * 5.83096 * 15 14 13 38 38 H 0.96998 * 120.00009 * 179.97438 * 19 18 16 39 39 H 1.08999 * 113.61489 * 220.01898 * 24 14 13 40 40 H 1.08996 * 113.61802 * 89.11633 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6111 0.6552 -0.0057 5 1 4.3840 1.2413 -0.0101 6 6 3.6656 -0.6903 -0.0038 7 6 2.3863 -1.1740 0.0026 8 6 1.9749 -2.5880 0.0061 9 8 0.9707 -2.9306 -0.5885 10 7 2.7111 -3.5025 0.6682 11 6 3.8458 -3.0738 1.4897 12 6 2.3765 -4.9251 0.5663 13 6 2.9372 -5.6028 -0.6951 14 6 4.2026 -5.9046 0.1250 15 7 5.2093 -4.8420 0.0631 16 6 6.4348 -5.0250 0.6463 17 1 6.6863 -5.9787 1.0863 18 6 7.3535 -3.9848 0.6718 19 7 8.4897 -4.1261 1.3209 20 14 6.9772 -2.3844 -0.2151 21 1 6.3866 -1.4150 0.7422 22 1 8.2320 -1.8232 -0.7771 23 1 6.0141 -2.6429 -1.3155 24 6 3.3122 -5.8375 1.3769 25 1 -0.3634 0.0028 1.0276 26 1 -0.3633 0.8887 -0.5162 27 1 -0.3634 -0.8913 -0.5115 28 1 1.9868 2.1060 0.0005 29 1 4.5664 -1.2860 -0.0069 30 1 4.7294 -2.9658 0.8608 31 1 3.6143 -2.1172 1.9583 32 1 4.0379 -3.8192 2.2614 33 1 1.3183 -5.1243 0.7353 34 1 2.3866 -6.4953 -0.9926 35 1 3.1070 -4.9136 -1.5222 36 1 4.6198 -6.8943 -0.0616 37 1 5.0079 -4.0089 -0.3910 38 1 9.1318 -3.3993 1.3385 39 1 3.7847 -5.3376 2.2225 40 1 2.8641 -6.7940 1.6458 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999825807.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:39 Heat of formation + Delta-G solvation = 54.913360 kcal Electronic energy + Delta-G solvation = -22827.872311 eV Core-core repulsion = 19644.927942 eV Total energy + Delta-G solvation = -3182.944369 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.34589 -41.22577 -39.08568 -35.70951 -35.14442 -33.41402 -32.68796 -30.75954 -28.29164 -27.44087 -26.73276 -25.98875 -24.81001 -22.98302 -21.31205 -20.05418 -19.80870 -19.40569 -18.77696 -17.78115 -16.91765 -16.72871 -16.68861 -15.82585 -15.73181 -15.35353 -15.06308 -14.71443 -14.55124 -14.18494 -13.96933 -13.75250 -13.68312 -13.52059 -13.25407 -12.87770 -12.81538 -12.55931 -12.45849 -12.34839 -12.06557 -11.88861 -11.77351 -11.12125 -10.89753 -10.83917 -9.73140 -9.46253 -9.25990 -9.22029 -8.02549 -5.34742 0.72825 1.15466 1.30410 1.34895 1.44601 1.99474 2.24525 2.38877 2.42297 3.25783 3.50995 3.56100 3.77667 3.83935 3.96789 4.13456 4.17336 4.26130 4.28727 4.39255 4.57313 4.62936 4.83892 4.84184 4.87441 4.92193 4.93187 4.97499 5.01942 5.13865 5.26272 5.31430 5.38153 5.67321 5.78714 5.84480 5.89966 6.22415 6.45331 6.57623 7.05380 7.22699 7.81748 8.02060 9.18703 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016491 B = 0.008385 C = 0.005957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.459867 B = 3338.607089 C = 4699.488110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.149 4.149 3 C 0.005 3.995 4 N -0.538 5.538 5 H 0.434 0.566 6 C 0.026 3.974 7 C -0.250 4.250 8 C 0.583 3.417 9 O -0.576 6.576 10 N -0.589 5.589 11 C 0.079 3.921 12 C 0.124 3.876 13 C -0.149 4.149 14 C 0.149 3.851 15 N -0.735 5.735 16 C -0.219 4.219 17 H 0.065 0.935 18 C -0.052 4.052 19 N -0.976 5.976 20 Si 0.919 3.081 21 H -0.247 1.247 22 H -0.300 1.300 23 H -0.270 1.270 24 C -0.161 4.161 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.048 0.952 28 H 0.215 0.785 29 H 0.153 0.847 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.122 0.878 35 H 0.043 0.957 36 H 0.062 0.938 37 H 0.363 0.637 38 H 0.257 0.743 39 H 0.072 0.928 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.603 9.865 -0.688 16.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.155 4.155 3 C -0.124 4.124 4 N -0.133 5.133 5 H 0.273 0.727 6 C -0.111 4.111 7 C -0.260 4.260 8 C 0.374 3.626 9 O -0.458 6.458 10 N -0.321 5.321 11 C -0.063 4.063 12 C 0.021 3.979 13 C -0.188 4.188 14 C 0.040 3.960 15 N -0.379 5.379 16 C -0.350 4.350 17 H 0.083 0.917 18 C -0.243 4.243 19 N -0.627 5.627 20 Si 0.748 3.252 21 H -0.173 1.173 22 H -0.228 1.228 23 H -0.196 1.196 24 C -0.201 4.201 25 H 0.085 0.915 26 H 0.106 0.894 27 H 0.067 0.933 28 H 0.232 0.768 29 H 0.170 0.830 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.140 0.860 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.199 0.801 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.835 9.687 -0.867 16.912 hybrid contribution 1.072 0.831 -0.551 1.464 sum -12.764 10.518 -1.418 16.600 Atomic orbital electron populations 1.20136 0.88628 1.02692 1.01976 1.20819 0.96391 0.90188 1.08068 1.22187 0.81350 1.00312 1.08525 1.41559 1.09515 1.05600 1.56603 0.72680 1.22147 0.98066 0.85384 1.05500 1.20457 0.93935 0.92763 1.18893 1.17812 0.82102 0.85019 0.77686 1.90660 1.27043 1.81900 1.46166 1.47495 1.30734 1.06169 1.47653 1.22278 0.87823 1.00635 0.95583 1.21898 0.98774 0.79422 0.97793 1.23690 0.97327 1.01416 0.96373 1.21398 0.87753 0.91792 0.95038 1.42837 1.12203 1.16471 1.66354 1.18993 0.90580 0.97901 1.27516 0.91737 1.25254 0.96708 1.00675 1.01706 1.69840 1.10764 1.33956 1.48110 0.86107 0.76875 0.82596 0.79604 1.17295 1.22802 1.19572 1.24002 0.97306 0.99893 0.98914 0.91531 0.89389 0.93290 0.76820 0.82958 0.92856 0.91571 0.89566 0.89090 0.85955 0.93764 0.92000 0.80143 0.93336 0.90987 0.86364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.83 10.29 71.24 0.73 -1.10 16 2 C -0.15 -4.06 6.35 -18.52 -0.12 -4.17 16 3 C 0.00 0.09 11.82 83.12 0.98 1.07 16 4 N -0.54 -11.76 5.90 -194.55 -1.15 -12.91 16 5 H 0.43 6.41 8.96 -92.71 -0.83 5.58 16 6 C 0.03 0.80 9.91 83.92 0.83 1.63 16 7 C -0.25 -8.45 5.43 -19.04 -0.10 -8.56 16 8 C 0.58 22.28 7.55 86.62 0.65 22.93 16 9 O -0.58 -24.40 15.83 -4.13 -0.07 -24.47 16 10 N -0.59 -21.21 2.71 -823.70 -2.23 -23.45 16 11 C 0.08 2.86 7.13 127.77 0.91 3.78 16 12 C 0.12 4.08 3.97 45.52 0.18 4.26 16 13 C -0.15 -4.87 7.57 31.12 0.24 -4.63 16 14 C 0.15 5.49 4.53 45.52 0.21 5.69 16 15 N -0.73 -32.83 3.07 -320.45 -0.98 -33.82 16 16 C -0.22 -11.68 10.34 84.03 0.87 -10.81 16 17 H 0.06 3.77 8.06 -2.91 -0.02 3.75 16 18 C -0.05 -2.86 5.50 84.86 0.47 -2.39 16 19 N -0.98 -59.25 13.97 21.65 0.30 -58.95 16 20 Si 0.92 41.71 23.39 68.60 1.60 43.32 16 21 H -0.25 -9.83 6.41 99.48 0.64 -9.19 16 22 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 23 H -0.27 -11.89 6.44 99.48 0.64 -11.25 16 24 C -0.16 -5.04 7.23 31.12 0.22 -4.81 16 25 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 27 H 0.05 1.44 6.99 -2.39 -0.02 1.42 16 28 H 0.22 2.16 8.06 -2.91 -0.02 2.14 16 29 H 0.15 5.22 2.98 -2.91 -0.01 5.21 16 30 H 0.05 2.13 1.45 -2.39 0.00 2.13 16 31 H 0.07 2.19 6.59 -2.38 -0.02 2.18 16 32 H 0.09 3.15 5.31 -2.39 -0.01 3.13 16 33 H 0.09 2.84 8.05 -2.39 -0.02 2.82 16 34 H 0.12 3.19 8.14 -2.38 -0.02 3.17 16 35 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.06 2.27 8.14 -2.38 -0.02 2.26 16 37 H 0.36 16.37 4.02 -92.71 -0.37 16.00 16 38 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 39 H 0.07 2.49 5.53 -2.39 -0.01 2.47 16 40 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -70.66 305.62 3.31 -67.36 By element: Atomic # 1 Polarization: 40.26 SS G_CDS: -0.24 Total: 40.01 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 6.07 Total: 2.90 kcal Atomic # 7 Polarization: -125.06 SS G_CDS: -4.06 Total: -129.12 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.07 Total: -24.47 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 1.60 Total: 43.32 kcal Total: -70.66 3.31 -67.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999825807.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.270 kcal (2) G-P(sol) polarization free energy of solvation -70.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds