Wall clock time and date at job start Mon Mar 30 2020 02:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34486 * 126.83221 * 2 1 4 4 N 1.36448 * 108.85380 * 180.25745 * 3 2 1 5 5 H 0.97000 * 124.84837 * 179.76992 * 4 3 2 6 6 C 1.34658 * 110.29941 * 359.74676 * 4 3 2 7 7 C 1.36770 * 108.39501 * 359.97438 * 6 4 3 8 8 C 1.47270 * 126.93928 * 179.97438 * 7 6 4 9 9 O 1.21629 * 119.99545 * 140.41352 * 8 7 6 10 10 N 1.34777 * 120.00097 * 320.41092 * 8 7 6 11 11 C 1.46928 * 120.60477 * 354.49824 * 10 8 7 12 12 C 1.53191 * 108.77223 * 233.57876 * 11 10 8 13 13 C 1.53052 * 109.33621 * 305.41250 * 12 11 10 14 14 C 1.53041 * 109.53529 * 61.34914 * 13 12 11 15 15 H 1.09001 * 109.49479 * 58.58736 * 14 13 12 16 16 N 1.46495 * 109.49508 * 178.64695 * 14 13 12 17 17 C 1.36934 * 120.00119 * 204.99570 * 16 14 13 18 18 H 1.08004 * 120.00280 * 0.02562 * 17 16 14 19 19 C 1.38812 * 120.00118 * 180.02562 * 17 16 14 20 20 N 1.31621 * 119.99992 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99972 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47105 * 90.00440 * 21 19 17 23 23 H 1.48500 * 109.47094 * 209.99928 * 21 19 17 24 24 H 1.48494 * 109.47207 * 330.00131 * 21 19 17 25 25 C 1.46920 * 120.62648 * 174.51860 * 10 8 7 26 26 H 1.09004 * 109.46681 * 270.15066 * 1 2 3 27 27 H 1.09000 * 109.47300 * 30.14702 * 1 2 3 28 28 H 1.08999 * 109.47175 * 150.14817 * 1 2 3 29 29 H 1.08001 * 125.57530 * 359.96625 * 3 2 1 30 30 H 1.07993 * 125.80245 * 180.02562 * 6 4 3 31 31 H 1.09001 * 109.56349 * 113.80477 * 11 10 8 32 32 H 1.09008 * 109.61554 * 353.37818 * 11 10 8 33 33 H 1.09000 * 109.49846 * 185.44918 * 12 11 10 34 34 H 1.08991 * 109.50039 * 65.38132 * 12 11 10 35 35 H 1.08999 * 109.45467 * 181.36967 * 13 12 11 36 36 H 1.08996 * 109.45763 * 301.33231 * 13 12 11 37 37 H 0.97003 * 120.00155 * 25.00719 * 16 14 13 38 38 H 0.97004 * 119.99747 * 179.97438 * 20 19 17 39 39 H 1.08998 * 109.59041 * 6.60516 * 25 10 8 40 40 H 1.08998 * 109.70655 * 246.24542 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6553 -0.0058 5 1 4.3840 1.2414 -0.0102 6 6 3.6656 -0.6902 -0.0040 7 6 2.3864 -1.1740 0.0036 8 6 1.9750 -2.5881 0.0075 9 8 1.0294 -2.9444 0.6844 10 7 2.6462 -3.4873 -0.7391 11 6 3.7121 -3.0541 -1.6529 12 6 3.4144 -3.6015 -3.0523 13 6 3.2305 -5.1190 -2.9743 14 6 2.0430 -5.4446 -2.0655 15 1 1.1438 -4.9694 -2.4577 16 7 1.8478 -6.8956 -2.0172 17 6 0.6136 -7.4111 -1.7235 18 1 -0.2160 -6.7478 -1.5280 19 6 0.4288 -8.7860 -1.6772 20 7 1.4399 -9.5944 -1.9150 21 14 -1.2550 -9.4891 -1.2773 22 1 -2.0236 -9.6781 -2.5338 23 1 -1.0954 -10.7975 -0.5933 24 1 -1.9845 -8.5509 -0.3871 25 6 2.3255 -4.9186 -0.6547 26 1 -0.3633 0.0027 1.0277 27 1 -0.3634 0.8887 -0.5161 28 1 -0.3633 -0.8913 -0.5115 29 1 1.9868 2.1059 -0.0005 30 1 4.5664 -1.2860 -0.0072 31 1 4.6702 -3.4406 -1.3055 32 1 3.7455 -1.9650 -1.6861 33 1 4.2456 -3.3696 -3.7182 34 1 2.5025 -3.1438 -3.4357 35 1 3.0427 -5.5137 -3.9728 36 1 4.1340 -5.5738 -2.5682 37 1 2.5929 -7.4914 -2.1930 38 1 1.3108 -10.5552 -1.8823 39 1 1.4442 -5.0594 -0.0290 40 1 3.1688 -5.4594 -0.2252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000909155.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:41 Heat of formation + Delta-G solvation = 21.800994 kcal Electronic energy + Delta-G solvation = -21750.035357 eV Core-core repulsion = 18565.655129 eV Total energy + Delta-G solvation = -3184.380228 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.32508 -39.29087 -36.99933 -34.38655 -32.51626 -32.24139 -31.13542 -30.02899 -27.95330 -26.61541 -25.27177 -23.90237 -22.20166 -21.74913 -20.19514 -19.58416 -18.61511 -17.74807 -17.01676 -16.34462 -15.31449 -15.13839 -14.48208 -14.29413 -14.13442 -13.83047 -13.74579 -13.42678 -13.23776 -13.01817 -12.71638 -12.60903 -12.30606 -12.23662 -12.12561 -11.41645 -11.25194 -10.96012 -10.78488 -10.58015 -10.47749 -10.13865 -9.74777 -9.67607 -9.47058 -8.99514 -8.63314 -8.33497 -8.15922 -6.93024 -5.73081 -3.02352 1.87824 2.36728 3.06447 3.31909 3.49491 3.54622 3.57808 3.67371 4.64076 4.76118 4.85996 4.98469 5.06395 5.20477 5.26586 5.36296 5.47215 5.56024 5.61872 5.74843 5.80519 5.84824 5.87342 5.99544 6.08705 6.13461 6.19055 6.25754 6.30269 6.43725 6.58933 6.70661 6.82656 6.89713 6.93462 7.13731 7.31462 7.78456 7.87845 8.45290 8.66380 9.57208 10.11764 10.47214 11.49385 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025484 B = 0.004359 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.459181 B = 6422.168887 C = 7163.130455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.116 4.116 3 C -0.026 4.026 4 N -0.554 5.554 5 H 0.415 0.585 6 C 0.035 3.965 7 C -0.211 4.211 8 C 0.583 3.417 9 O -0.541 6.541 10 N -0.604 5.604 11 C 0.102 3.898 12 C -0.129 4.129 13 C -0.125 4.125 14 C 0.168 3.832 15 H 0.051 0.949 16 N -0.719 5.719 17 C -0.240 4.240 18 H 0.072 0.928 19 C -0.012 4.012 20 N -0.934 5.934 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.094 3.906 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.167 0.833 30 H 0.172 0.828 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.385 0.615 38 H 0.255 0.745 39 H 0.090 0.910 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.627 22.982 0.399 24.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.123 4.123 3 C -0.154 4.154 4 N -0.148 5.148 5 H 0.251 0.749 6 C -0.100 4.100 7 C -0.222 4.222 8 C 0.371 3.629 9 O -0.418 6.418 10 N -0.338 5.338 11 C -0.021 4.021 12 C -0.168 4.168 13 C -0.164 4.164 14 C 0.057 3.943 15 H 0.069 0.931 16 N -0.360 5.360 17 C -0.371 4.371 18 H 0.090 0.910 19 C -0.207 4.207 20 N -0.582 5.582 21 Si 0.737 3.263 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.206 1.206 25 C -0.030 4.030 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.184 0.816 30 H 0.189 0.811 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.219 0.781 38 H 0.065 0.935 39 H 0.108 0.892 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.016 22.804 0.799 24.185 hybrid contribution -0.091 -0.453 0.168 0.492 sum 7.924 22.351 0.966 23.734 Atomic orbital electron populations 1.20119 0.89487 1.01999 1.02092 1.20538 0.95519 0.90448 1.05780 1.21506 0.82505 0.99014 1.12362 1.41454 1.08131 1.06619 1.58637 0.74858 1.21925 0.98504 0.83574 1.05956 1.20468 0.92796 0.93129 1.15812 1.17513 0.82028 0.84024 0.79327 1.90772 1.27947 1.80225 1.42866 1.48125 1.36437 1.08039 1.41187 1.21910 0.90227 1.00168 0.89826 1.21875 1.01874 0.97018 0.96042 1.21822 0.99393 0.94284 1.00889 1.20492 0.95587 0.86558 0.91638 0.93146 1.42379 1.10422 0.99304 1.83870 1.19298 0.87821 0.90360 1.39613 0.91009 1.24730 0.97507 0.95987 1.02515 1.69666 1.29749 1.02580 1.56237 0.86194 0.83781 0.78416 0.77913 1.21725 1.21780 1.20561 1.22705 1.01701 0.77015 1.01579 0.91525 0.92305 0.91393 0.81591 0.81057 0.91942 0.89583 0.91297 0.91649 0.91555 0.92144 0.78134 0.93542 0.89152 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.23 36.01 0.37 -0.60 16 2 C -0.12 -1.46 6.36 -102.54 -0.65 -2.11 16 3 C -0.03 -0.23 11.82 -16.82 -0.20 -0.43 16 4 N -0.55 -4.05 5.90 -12.85 -0.08 -4.12 16 5 H 0.42 1.44 8.96 -40.82 -0.37 1.08 16 6 C 0.04 0.34 9.52 -16.84 -0.16 0.18 16 7 C -0.21 -2.95 5.41 -103.35 -0.56 -3.51 16 8 C 0.58 10.40 7.54 -12.59 -0.09 10.31 16 9 O -0.54 -11.94 16.40 5.25 0.09 -11.85 16 10 N -0.60 -9.98 2.97 -174.09 -0.52 -10.50 16 11 C 0.10 1.24 5.46 -3.71 -0.02 1.22 16 12 C -0.13 -1.65 6.08 -26.61 -0.16 -1.81 16 13 C -0.13 -2.05 5.36 -26.68 -0.14 -2.19 16 14 C 0.17 3.48 2.92 -67.81 -0.20 3.28 16 15 H 0.05 1.13 8.08 -51.93 -0.42 0.71 16 16 N -0.72 -18.35 5.12 -53.31 -0.27 -18.62 16 17 C -0.24 -6.86 9.93 -15.06 -0.15 -7.01 16 18 H 0.07 2.05 7.83 -52.48 -0.41 1.64 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 20 N -0.93 -28.50 13.06 55.49 0.72 -27.78 16 21 Si 0.91 23.09 29.55 -169.99 -5.02 18.07 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 23 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 24 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 25 C 0.09 1.88 6.03 -3.71 -0.02 1.86 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.17 0.96 8.06 -52.49 -0.42 0.53 16 30 H 0.17 1.26 7.25 -52.49 -0.38 0.88 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.89 4.76 -51.92 -0.25 0.64 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.38 10.25 7.80 -40.82 -0.32 9.93 16 38 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.09 2.11 6.99 -51.93 -0.36 1.75 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 327.79 15.07 4.94 4.94 Total: -1.00 -35.24 327.79 -8.10 -43.33 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -5.87 Total: 7.77 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -2.09 Total: -1.25 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: -0.14 Total: -61.01 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.24 -8.10 -43.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000909155.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.132 kcal (2) G-P(sol) polarization free energy of solvation -35.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds