Wall clock time and date at job start Mon Mar 30 2020 02:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34486 * 126.83221 * 2 1 4 4 N 1.36448 * 108.85380 * 180.25745 * 3 2 1 5 5 H 0.97000 * 124.84837 * 179.76992 * 4 3 2 6 6 C 1.34658 * 110.29941 * 359.74676 * 4 3 2 7 7 C 1.36770 * 108.39501 * 359.97438 * 6 4 3 8 8 C 1.47270 * 126.93928 * 179.97438 * 7 6 4 9 9 O 1.21629 * 119.99545 * 140.41352 * 8 7 6 10 10 N 1.34777 * 120.00097 * 320.41092 * 8 7 6 11 11 C 1.46928 * 120.60477 * 354.49824 * 10 8 7 12 12 C 1.53191 * 108.77223 * 233.57876 * 11 10 8 13 13 C 1.53052 * 109.33621 * 305.41250 * 12 11 10 14 14 C 1.53041 * 109.53529 * 61.34914 * 13 12 11 15 15 H 1.09001 * 109.49479 * 58.58736 * 14 13 12 16 16 N 1.46495 * 109.49508 * 178.64695 * 14 13 12 17 17 C 1.36934 * 120.00119 * 204.99570 * 16 14 13 18 18 H 1.08004 * 120.00280 * 0.02562 * 17 16 14 19 19 C 1.38812 * 120.00118 * 180.02562 * 17 16 14 20 20 N 1.31621 * 119.99992 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99972 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47105 * 90.00440 * 21 19 17 23 23 H 1.48500 * 109.47094 * 209.99928 * 21 19 17 24 24 H 1.48494 * 109.47207 * 330.00131 * 21 19 17 25 25 C 1.46920 * 120.62648 * 174.51860 * 10 8 7 26 26 H 1.09004 * 109.46681 * 270.15066 * 1 2 3 27 27 H 1.09000 * 109.47300 * 30.14702 * 1 2 3 28 28 H 1.08999 * 109.47175 * 150.14817 * 1 2 3 29 29 H 1.08001 * 125.57530 * 359.96625 * 3 2 1 30 30 H 1.07993 * 125.80245 * 180.02562 * 6 4 3 31 31 H 1.09001 * 109.56349 * 113.80477 * 11 10 8 32 32 H 1.09008 * 109.61554 * 353.37818 * 11 10 8 33 33 H 1.09000 * 109.49846 * 185.44918 * 12 11 10 34 34 H 1.08991 * 109.50039 * 65.38132 * 12 11 10 35 35 H 1.08999 * 109.45467 * 181.36967 * 13 12 11 36 36 H 1.08996 * 109.45763 * 301.33231 * 13 12 11 37 37 H 0.97003 * 120.00155 * 25.00719 * 16 14 13 38 38 H 0.97004 * 119.99747 * 179.97438 * 20 19 17 39 39 H 1.08998 * 109.59041 * 6.60516 * 25 10 8 40 40 H 1.08998 * 109.70655 * 246.24542 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6553 -0.0058 5 1 4.3840 1.2414 -0.0102 6 6 3.6656 -0.6902 -0.0040 7 6 2.3864 -1.1740 0.0036 8 6 1.9750 -2.5881 0.0075 9 8 1.0294 -2.9444 0.6844 10 7 2.6462 -3.4873 -0.7391 11 6 3.7121 -3.0541 -1.6529 12 6 3.4144 -3.6015 -3.0523 13 6 3.2305 -5.1190 -2.9743 14 6 2.0430 -5.4446 -2.0655 15 1 1.1438 -4.9694 -2.4577 16 7 1.8478 -6.8956 -2.0172 17 6 0.6136 -7.4111 -1.7235 18 1 -0.2160 -6.7478 -1.5280 19 6 0.4288 -8.7860 -1.6772 20 7 1.4399 -9.5944 -1.9150 21 14 -1.2550 -9.4891 -1.2773 22 1 -2.0236 -9.6781 -2.5338 23 1 -1.0954 -10.7975 -0.5933 24 1 -1.9845 -8.5509 -0.3871 25 6 2.3255 -4.9186 -0.6547 26 1 -0.3633 0.0027 1.0277 27 1 -0.3634 0.8887 -0.5161 28 1 -0.3633 -0.8913 -0.5115 29 1 1.9868 2.1059 -0.0005 30 1 4.5664 -1.2860 -0.0072 31 1 4.6702 -3.4406 -1.3055 32 1 3.7455 -1.9650 -1.6861 33 1 4.2456 -3.3696 -3.7182 34 1 2.5025 -3.1438 -3.4357 35 1 3.0427 -5.5137 -3.9728 36 1 4.1340 -5.5738 -2.5682 37 1 2.5929 -7.4914 -2.1930 38 1 1.3108 -10.5552 -1.8823 39 1 1.4442 -5.0594 -0.0290 40 1 3.1688 -5.4594 -0.2252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000909155.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:41 Heat of formation + Delta-G solvation = -3.647682 kcal Electronic energy + Delta-G solvation = -21751.138895 eV Core-core repulsion = 18565.655129 eV Total energy + Delta-G solvation = -3185.483766 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.17624 -40.58624 -38.49576 -36.19378 -33.94330 -33.35591 -32.71445 -31.23199 -29.54989 -27.45847 -26.58391 -25.86893 -23.35142 -23.21622 -21.35759 -20.75618 -19.54808 -19.17343 -18.67418 -17.61049 -16.79433 -16.56915 -16.11700 -15.58703 -15.43398 -15.22909 -15.03335 -14.70867 -14.53165 -14.07459 -13.97991 -13.78211 -13.63156 -13.57028 -13.22159 -13.07336 -12.89663 -12.50365 -12.29994 -12.22593 -11.99904 -11.87618 -11.63576 -11.34350 -11.12389 -10.87096 -9.75288 -9.44387 -9.10320 -8.99685 -7.99599 -5.28671 0.94184 1.43246 1.44786 1.53294 1.54233 2.01390 2.35744 2.52334 2.58468 3.33370 3.75823 3.83166 4.03275 4.05525 4.13555 4.27559 4.29884 4.36713 4.40007 4.48776 4.63361 4.68393 4.78639 4.87389 4.88930 4.93027 4.99091 5.06128 5.12367 5.16491 5.30341 5.39716 5.43435 5.48488 5.64960 5.84050 6.02326 6.23663 6.59869 6.78378 7.30079 7.33166 8.01856 8.28493 9.23089 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025484 B = 0.004359 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.459181 B = 6422.168887 C = 7163.130455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.161 4.161 3 C 0.003 3.997 4 N -0.530 5.530 5 H 0.440 0.560 6 C 0.064 3.936 7 C -0.260 4.260 8 C 0.575 3.425 9 O -0.603 6.603 10 N -0.603 5.603 11 C 0.098 3.902 12 C -0.121 4.121 13 C -0.117 4.117 14 C 0.167 3.833 15 H 0.024 0.976 16 N -0.729 5.729 17 C -0.247 4.247 18 H 0.061 0.939 19 C -0.065 4.065 20 N -0.963 5.963 21 Si 0.968 3.032 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.279 1.279 25 C 0.110 3.890 26 H 0.055 0.945 27 H 0.088 0.912 28 H 0.029 0.971 29 H 0.205 0.795 30 H 0.203 0.797 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.378 0.622 38 H 0.254 0.746 39 H 0.042 0.958 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.187 26.159 -0.285 28.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.167 4.167 3 C -0.126 4.126 4 N -0.126 5.126 5 H 0.281 0.719 6 C -0.074 4.074 7 C -0.271 4.271 8 C 0.366 3.634 9 O -0.486 6.486 10 N -0.335 5.335 11 C -0.023 4.023 12 C -0.160 4.160 13 C -0.155 4.155 14 C 0.058 3.942 15 H 0.042 0.958 16 N -0.369 5.369 17 C -0.379 4.379 18 H 0.079 0.921 19 C -0.258 4.258 20 N -0.613 5.613 21 Si 0.796 3.204 22 H -0.209 1.209 23 H -0.214 1.214 24 H -0.205 1.205 25 C -0.016 4.016 26 H 0.074 0.926 27 H 0.106 0.894 28 H 0.048 0.952 29 H 0.222 0.778 30 H 0.219 0.781 31 H 0.109 0.891 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.211 0.789 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.634 26.066 0.085 28.151 hybrid contribution -0.850 -1.322 0.383 1.618 sum 9.784 24.744 0.468 26.612 Atomic orbital electron populations 1.20035 0.90500 1.01479 1.01282 1.20727 0.95641 0.91483 1.08847 1.21927 0.82300 0.99547 1.08848 1.41486 1.08693 1.06105 1.56306 0.71906 1.22180 0.97621 0.84640 1.02920 1.20270 0.95351 0.90938 1.20500 1.18264 0.81032 0.85841 0.78244 1.90723 1.30845 1.81486 1.45509 1.48164 1.37368 1.06153 1.41822 1.22290 0.89637 1.02002 0.88338 1.21873 1.03169 0.93599 0.97318 1.21732 0.97228 0.97427 0.99094 1.20640 0.96792 0.83805 0.93011 0.95775 1.42490 1.09200 1.01290 1.83963 1.19505 0.88846 0.90655 1.38925 0.92073 1.25458 1.00973 0.96257 1.03115 1.69789 1.31429 1.02558 1.57522 0.85234 0.79845 0.77484 0.77792 1.20891 1.21442 1.20478 1.22141 0.99729 0.79896 0.99861 0.92630 0.89365 0.95210 0.77811 0.78051 0.89106 0.86770 0.86917 0.92775 0.92157 0.91057 0.78897 0.93747 0.93917 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.91 10.23 71.24 0.73 -1.18 16 2 C -0.16 -3.84 6.36 -18.52 -0.12 -3.96 16 3 C 0.00 0.04 11.82 83.12 0.98 1.02 16 4 N -0.53 -4.94 5.90 -194.56 -1.15 -6.09 16 5 H 0.44 0.26 8.96 -92.71 -0.83 -0.57 16 6 C 0.06 0.98 9.52 83.92 0.80 1.78 16 7 C -0.26 -6.97 5.41 -19.04 -0.10 -7.07 16 8 C 0.57 21.31 7.54 86.62 0.65 21.96 16 9 O -0.60 -29.00 16.40 -4.12 -0.07 -29.06 16 10 N -0.60 -20.06 2.97 -822.95 -2.45 -22.51 16 11 C 0.10 2.09 5.46 86.36 0.47 2.56 16 12 C -0.12 -2.74 6.08 30.68 0.19 -2.55 16 13 C -0.12 -3.69 5.36 30.63 0.16 -3.53 16 14 C 0.17 7.21 2.92 45.07 0.13 7.34 16 15 H 0.02 1.15 8.08 -2.39 -0.02 1.13 16 16 N -0.73 -38.80 5.12 -322.58 -1.65 -40.45 16 17 C -0.25 -14.77 9.93 84.03 0.83 -13.94 16 18 H 0.06 3.70 7.83 -2.91 -0.02 3.68 16 19 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 20 N -0.96 -60.07 13.06 21.65 0.28 -59.79 16 21 Si 0.97 48.77 29.55 68.60 2.03 50.80 16 22 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 23 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 24 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 25 C 0.11 4.59 6.03 86.36 0.52 5.11 16 26 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.21 1.18 8.06 -2.91 -0.02 1.16 16 30 H 0.20 1.83 7.25 -2.91 -0.02 1.81 16 31 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.11 1.84 4.76 -2.38 -0.01 1.83 16 33 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.38 20.83 7.80 -92.71 -0.72 20.11 16 38 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 39 H 0.04 2.18 6.99 -2.39 -0.02 2.16 16 40 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -84.33 327.79 2.22 -82.11 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -0.49 Total: 20.90 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 5.72 Total: 4.09 kcal Atomic # 7 Polarization: -123.88 SS G_CDS: -4.96 Total: -128.84 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -0.07 Total: -29.06 kcal Atomic # 14 Polarization: 48.77 SS G_CDS: 2.03 Total: 50.80 kcal Total: -84.33 2.22 -82.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000909155.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.465 kcal (2) G-P(sol) polarization free energy of solvation -84.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds