Wall clock time and date at job start Mon Mar 30 2020 01:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34662 * 125.80250 * 2 1 4 4 H 0.97000 * 124.84834 * 0.02562 * 3 2 1 5 5 C 1.36445 * 110.29321 * 180.29700 * 3 2 1 6 6 C 1.34488 * 108.85844 * 359.74899 * 5 3 2 7 7 C 1.36770 * 125.79899 * 179.87193 * 2 1 3 8 8 C 1.47264 * 126.94107 * 359.97438 * 7 2 1 9 9 O 1.21624 * 120.00145 * 359.71004 * 8 7 2 10 10 N 1.34777 * 119.99721 * 179.71487 * 8 7 2 11 11 C 1.46495 * 120.00118 * 180.02562 * 10 8 7 12 12 C 1.53039 * 109.46476 * 204.99626 * 11 10 8 13 13 C 1.53192 * 109.31624 * 178.61195 * 12 11 10 14 14 N 1.46925 * 108.89163 * 54.56131 * 13 12 11 15 15 C 1.36940 * 120.62821 * 126.46045 * 14 13 12 16 16 H 1.08000 * 119.99751 * 331.92858 * 15 14 13 17 17 C 1.38810 * 120.00078 * 151.92771 * 15 14 13 18 18 N 1.31619 * 119.99689 * 343.17980 * 17 15 14 19 19 Si 1.86795 * 119.99988 * 163.18147 * 17 15 14 20 20 H 1.48509 * 109.47304 * 59.99932 * 19 17 15 21 21 H 1.48501 * 109.47440 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47535 * 299.99868 * 19 17 15 23 23 C 1.46954 * 118.71946 * 306.64559 * 14 13 12 24 24 C 1.53044 * 109.46278 * 84.92375 * 11 10 8 25 25 H 1.08998 * 109.47185 * 270.13703 * 1 2 3 26 26 H 1.09000 * 109.46992 * 30.12941 * 1 2 3 27 27 H 1.08996 * 109.47524 * 150.13303 * 1 2 3 28 28 H 1.07999 * 125.56547 * 179.77401 * 5 3 2 29 29 H 1.07993 * 126.82911 * 180.02562 * 6 5 3 30 30 H 0.96996 * 119.99854 * 0.02562 * 10 8 7 31 31 H 1.09009 * 109.46016 * 324.97414 * 11 10 8 32 32 H 1.09005 * 109.49298 * 58.66180 * 12 11 10 33 33 H 1.08998 * 109.49763 * 298.56780 * 12 11 10 34 34 H 1.08997 * 109.58838 * 174.42439 * 13 12 11 35 35 H 1.09002 * 109.58672 * 294.71002 * 13 12 11 36 36 H 0.97000 * 119.99637 * 180.02562 * 18 17 15 37 37 H 1.09000 * 109.47125 * 293.56762 * 23 14 13 38 38 H 1.09000 * 109.71403 * 173.28134 * 23 14 13 39 39 H 1.09000 * 109.50000 * 301.34377 * 24 11 10 40 40 H 1.09003 * 109.49095 * 61.43586 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0922 0.0000 4 1 1.9734 2.0074 0.0004 5 6 3.6096 0.7273 -0.0066 6 6 3.6882 -0.6153 -0.0055 7 6 2.3071 -1.1093 0.0025 8 6 1.8701 -2.5156 0.0061 9 8 0.6839 -2.7839 0.0126 10 7 2.7849 -3.5054 0.0025 11 6 2.3503 -4.9044 0.0056 12 6 3.4508 -5.7790 0.6107 13 6 2.9792 -7.2361 0.6441 14 7 2.5680 -7.6342 -0.7091 15 6 3.0953 -8.7524 -1.2979 16 1 4.0850 -9.0895 -1.0272 17 6 2.3579 -9.4526 -2.2428 18 7 1.0594 -9.2604 -2.3385 19 14 3.2085 -10.6677 -3.3783 20 1 3.8568 -11.7310 -2.5692 21 1 2.2069 -11.2799 -4.2879 22 1 4.2379 -9.9588 -4.1801 23 6 1.5830 -6.8069 -1.4198 24 6 2.0702 -5.3546 -1.4301 25 1 -0.3633 0.0025 1.0276 26 1 -0.3633 0.8888 -0.5158 27 1 -0.3634 -0.8911 -0.5117 28 1 4.4497 1.4059 -0.0116 29 1 4.5889 -1.2110 -0.0092 30 1 3.7309 -3.2915 -0.0022 31 1 1.4416 -5.0012 0.5999 32 1 3.6660 -5.4429 1.6250 33 1 4.3521 -5.7021 0.0025 34 1 3.7942 -7.8763 0.9815 35 1 2.1338 -7.3310 1.3256 36 1 0.5440 -9.7499 -2.9985 37 1 0.6222 -6.8663 -0.9086 38 1 1.4745 -7.1631 -2.4443 39 1 1.3029 -4.7165 -1.8684 40 1 2.9846 -5.2817 -2.0190 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001002561037.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:01 Heat of formation + Delta-G solvation = 20.388191 kcal Electronic energy + Delta-G solvation = -21477.960255 eV Core-core repulsion = 18293.518762 eV Total energy + Delta-G solvation = -3184.441492 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.30895 -39.07124 -37.08040 -34.26408 -32.20924 -31.59263 -31.08878 -29.88755 -29.25086 -26.50042 -24.96264 -22.87336 -22.12536 -21.32179 -20.65012 -19.61717 -18.78696 -17.77078 -16.77087 -15.75579 -15.56917 -15.07972 -14.70098 -14.03517 -13.94424 -13.71884 -13.46287 -13.36720 -13.11341 -12.88460 -12.79534 -12.64102 -12.42702 -12.25913 -11.64055 -11.39440 -11.03964 -10.84323 -10.66634 -10.29156 -10.18226 -9.97145 -9.67223 -9.66133 -9.32514 -8.97301 -8.55907 -8.36910 -8.20046 -6.61052 -5.72264 -3.15191 1.78724 2.32157 2.98534 3.42538 3.48386 3.49480 3.75134 3.80883 4.54818 4.71729 4.85231 5.08880 5.16093 5.39983 5.44054 5.51259 5.54596 5.55781 5.74664 5.75296 5.88865 5.95310 6.12142 6.20000 6.34145 6.51061 6.57393 6.64467 6.72899 6.74236 6.81419 6.89507 7.02146 7.12145 7.28836 7.46922 7.75936 7.85316 8.01104 8.51660 8.71305 9.27544 9.91047 10.48294 11.36308 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034927 B = 0.003603 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.480849 B = 7768.617592 C = 7960.369428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.101 3.899 3 N -0.556 5.556 4 H 0.414 0.586 5 C -0.022 4.022 6 C -0.168 4.168 7 C -0.230 4.230 8 C 0.586 3.414 9 O -0.552 6.552 10 N -0.720 5.720 11 C 0.153 3.847 12 C -0.139 4.139 13 C 0.149 3.851 14 N -0.593 5.593 15 C -0.255 4.255 16 H 0.065 0.935 17 C 0.003 3.997 18 N -0.901 5.901 19 Si 0.902 3.098 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.284 1.284 23 C 0.174 3.826 24 C -0.146 4.146 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.104 0.896 28 H 0.167 0.833 29 H 0.144 0.856 30 H 0.393 0.607 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.020 0.980 36 H 0.254 0.746 37 H 0.020 0.980 38 H 0.088 0.912 39 H 0.053 0.947 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.335 21.442 5.255 22.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.017 4.017 3 N -0.152 5.152 4 H 0.250 0.750 5 C -0.149 4.149 6 C -0.192 4.192 7 C -0.240 4.240 8 C 0.374 3.626 9 O -0.431 6.431 10 N -0.369 5.369 11 C 0.049 3.951 12 C -0.179 4.179 13 C 0.022 3.978 14 N -0.316 5.316 15 C -0.384 4.384 16 H 0.083 0.917 17 C -0.196 4.196 18 N -0.546 5.546 19 Si 0.732 3.268 20 H -0.209 1.209 21 H -0.217 1.217 22 H -0.211 1.211 23 C 0.048 3.952 24 C -0.186 4.186 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.122 0.878 28 H 0.185 0.815 29 H 0.162 0.838 30 H 0.227 0.773 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.038 0.962 36 H 0.064 0.936 37 H 0.038 0.962 38 H 0.106 0.894 39 H 0.072 0.928 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.353 21.240 5.153 22.112 hybrid contribution 0.943 0.016 -0.654 1.147 sum 4.296 21.255 4.499 22.147 Atomic orbital electron populations 1.20576 0.86999 1.04232 1.03409 1.20368 0.93760 0.85626 1.01932 1.41583 1.06263 1.08316 1.59000 0.74997 1.21679 0.85639 0.96439 1.11115 1.22056 0.95946 0.93650 1.07574 1.20299 0.93112 0.92488 1.18125 1.17338 0.85564 0.83941 0.75749 1.90731 1.16636 1.84395 1.51387 1.46073 1.09224 1.06564 1.75054 1.20989 0.98032 0.78030 0.98020 1.22329 0.98037 0.98265 0.99238 1.20829 0.97341 0.91314 0.88325 1.44084 1.49456 1.26883 1.11137 1.19135 0.97140 1.02519 1.19624 0.91748 1.25054 0.94878 0.98027 1.01641 1.70031 1.04453 1.43995 1.36071 0.86374 0.78565 0.80955 0.80875 1.20922 1.21658 1.21071 1.20750 0.90155 0.85000 0.99313 1.22554 1.00764 1.00340 0.94951 0.90534 0.92075 0.87787 0.81525 0.83803 0.77329 0.90118 0.92669 0.91948 0.92457 0.96235 0.93576 0.96180 0.89406 0.92842 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.98 9.88 36.01 0.36 -0.63 16 2 C 0.10 1.16 7.17 -81.88 -0.59 0.58 16 3 N -0.56 -4.55 5.90 -9.10 -0.05 -4.61 16 4 H 0.41 1.93 8.96 -40.82 -0.37 1.56 16 5 C -0.02 -0.18 11.89 -16.82 -0.20 -0.38 16 6 C -0.17 -1.80 10.56 -37.50 -0.40 -2.20 16 7 C -0.23 -3.16 6.29 -103.35 -0.65 -3.81 16 8 C 0.59 9.86 7.77 -12.59 -0.10 9.76 16 9 O -0.55 -11.01 14.48 5.26 0.08 -10.93 16 10 N -0.72 -11.35 5.07 -54.89 -0.28 -11.63 16 11 C 0.15 2.83 2.42 -67.89 -0.16 2.67 16 12 C -0.14 -2.43 5.55 -26.61 -0.15 -2.57 16 13 C 0.15 3.17 6.51 -3.71 -0.02 3.15 16 14 N -0.59 -15.21 3.00 -172.30 -0.52 -15.73 16 15 C -0.25 -7.09 9.58 -15.06 -0.14 -7.24 16 16 H 0.06 1.74 7.88 -52.49 -0.41 1.33 16 17 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 18 N -0.90 -26.77 11.20 55.49 0.62 -26.15 16 19 Si 0.90 21.97 29.59 -169.99 -5.03 16.94 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 C 0.17 4.38 5.30 -3.70 -0.02 4.36 16 24 C -0.15 -3.06 5.65 -26.61 -0.15 -3.21 16 25 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.10 1.37 6.47 -51.93 -0.34 1.03 16 28 H 0.17 0.82 8.06 -52.49 -0.42 0.39 16 29 H 0.14 1.28 7.69 -52.49 -0.40 0.88 16 30 H 0.39 5.14 7.72 -40.82 -0.32 4.82 16 31 H 0.08 1.67 7.58 -51.92 -0.39 1.28 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 39 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 325.87 15.07 4.91 4.91 Total: -1.00 -33.70 325.87 -8.48 -42.18 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -5.90 Total: 4.56 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -2.31 Total: 0.46 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.23 Total: -58.12 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.08 Total: -10.93 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.70 -8.48 -42.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001002561037.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.564 kcal (2) G-P(sol) polarization free energy of solvation -33.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds