Wall clock time and date at job start Mon Mar 30 2020 01:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34662 * 125.80250 * 2 1 4 4 H 0.97000 * 124.84834 * 0.02562 * 3 2 1 5 5 C 1.36445 * 110.29321 * 180.29700 * 3 2 1 6 6 C 1.34488 * 108.85844 * 359.74899 * 5 3 2 7 7 C 1.36770 * 125.79899 * 179.87193 * 2 1 3 8 8 C 1.47264 * 126.94107 * 359.97438 * 7 2 1 9 9 O 1.21624 * 120.00145 * 359.71004 * 8 7 2 10 10 N 1.34777 * 119.99721 * 179.71487 * 8 7 2 11 11 C 1.46495 * 120.00118 * 180.02562 * 10 8 7 12 12 C 1.53039 * 109.46476 * 204.99626 * 11 10 8 13 13 C 1.53192 * 109.31624 * 178.61195 * 12 11 10 14 14 N 1.46925 * 108.89163 * 54.56131 * 13 12 11 15 15 C 1.36940 * 120.62821 * 126.46045 * 14 13 12 16 16 H 1.08000 * 119.99751 * 331.92858 * 15 14 13 17 17 C 1.38810 * 120.00078 * 151.92771 * 15 14 13 18 18 N 1.31619 * 119.99689 * 343.17980 * 17 15 14 19 19 Si 1.86795 * 119.99988 * 163.18147 * 17 15 14 20 20 H 1.48509 * 109.47304 * 59.99932 * 19 17 15 21 21 H 1.48501 * 109.47440 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47535 * 299.99868 * 19 17 15 23 23 C 1.46954 * 118.71946 * 306.64559 * 14 13 12 24 24 C 1.53044 * 109.46278 * 84.92375 * 11 10 8 25 25 H 1.08998 * 109.47185 * 270.13703 * 1 2 3 26 26 H 1.09000 * 109.46992 * 30.12941 * 1 2 3 27 27 H 1.08996 * 109.47524 * 150.13303 * 1 2 3 28 28 H 1.07999 * 125.56547 * 179.77401 * 5 3 2 29 29 H 1.07993 * 126.82911 * 180.02562 * 6 5 3 30 30 H 0.96996 * 119.99854 * 0.02562 * 10 8 7 31 31 H 1.09009 * 109.46016 * 324.97414 * 11 10 8 32 32 H 1.09005 * 109.49298 * 58.66180 * 12 11 10 33 33 H 1.08998 * 109.49763 * 298.56780 * 12 11 10 34 34 H 1.08997 * 109.58838 * 174.42439 * 13 12 11 35 35 H 1.09002 * 109.58672 * 294.71002 * 13 12 11 36 36 H 0.97000 * 119.99637 * 180.02562 * 18 17 15 37 37 H 1.09000 * 109.47125 * 293.56762 * 23 14 13 38 38 H 1.09000 * 109.71403 * 173.28134 * 23 14 13 39 39 H 1.09000 * 109.50000 * 301.34377 * 24 11 10 40 40 H 1.09003 * 109.49095 * 61.43586 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0922 0.0000 4 1 1.9734 2.0074 0.0004 5 6 3.6096 0.7273 -0.0066 6 6 3.6882 -0.6153 -0.0055 7 6 2.3071 -1.1093 0.0025 8 6 1.8701 -2.5156 0.0061 9 8 0.6839 -2.7839 0.0126 10 7 2.7849 -3.5054 0.0025 11 6 2.3503 -4.9044 0.0056 12 6 3.4508 -5.7790 0.6107 13 6 2.9792 -7.2361 0.6441 14 7 2.5680 -7.6342 -0.7091 15 6 3.0953 -8.7524 -1.2979 16 1 4.0850 -9.0895 -1.0272 17 6 2.3579 -9.4526 -2.2428 18 7 1.0594 -9.2604 -2.3385 19 14 3.2085 -10.6677 -3.3783 20 1 3.8568 -11.7310 -2.5692 21 1 2.2069 -11.2799 -4.2879 22 1 4.2379 -9.9588 -4.1801 23 6 1.5830 -6.8069 -1.4198 24 6 2.0702 -5.3546 -1.4301 25 1 -0.3633 0.0025 1.0276 26 1 -0.3633 0.8888 -0.5158 27 1 -0.3634 -0.8911 -0.5117 28 1 4.4497 1.4059 -0.0116 29 1 4.5889 -1.2110 -0.0092 30 1 3.7309 -3.2915 -0.0022 31 1 1.4416 -5.0012 0.5999 32 1 3.6660 -5.4429 1.6250 33 1 4.3521 -5.7021 0.0025 34 1 3.7942 -7.8763 0.9815 35 1 2.1338 -7.3310 1.3256 36 1 0.5440 -9.7499 -2.9985 37 1 0.6222 -6.8663 -0.9086 38 1 1.4745 -7.1631 -2.4443 39 1 1.3029 -4.7165 -1.8684 40 1 2.9846 -5.2817 -2.0190 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001002561037.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:01 Heat of formation + Delta-G solvation = -2.874466 kcal Electronic energy + Delta-G solvation = -21478.968999 eV Core-core repulsion = 18293.518762 eV Total energy + Delta-G solvation = -3185.450237 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.12298 -40.45156 -38.75065 -35.93928 -33.93916 -32.42394 -32.27641 -31.61433 -30.88009 -27.50934 -26.71113 -24.33940 -23.88785 -22.71499 -21.51135 -21.13772 -20.18472 -18.75604 -18.51770 -17.16925 -16.86027 -16.60996 -16.10434 -15.61875 -15.34365 -15.13315 -14.96168 -14.68244 -14.32231 -14.17094 -14.06166 -13.94167 -13.57044 -13.40409 -13.17083 -12.98329 -12.63165 -12.55152 -12.44975 -12.10912 -12.06171 -11.84267 -11.51492 -11.36067 -10.76815 -10.56048 -10.01289 -9.66910 -9.07261 -8.70117 -7.86075 -5.32863 0.79541 1.48381 1.51499 1.58304 1.59271 2.18150 2.52956 2.60521 2.64220 3.29744 3.67088 3.87727 3.95668 4.10267 4.14351 4.31302 4.35845 4.38028 4.48431 4.67909 4.69205 4.73087 4.81552 4.89501 5.01049 5.05841 5.08920 5.10248 5.15452 5.32274 5.33965 5.46935 5.64538 5.66901 5.70298 5.83564 6.02363 6.39523 6.67847 6.81593 7.14212 7.46250 7.85074 8.38685 9.21090 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034927 B = 0.003603 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.480849 B = 7768.617592 C = 7960.369428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.095 3.905 3 N -0.538 5.538 4 H 0.433 0.567 5 C -0.001 4.001 6 C -0.188 4.188 7 C -0.270 4.270 8 C 0.579 3.421 9 O -0.595 6.595 10 N -0.709 5.709 11 C 0.164 3.836 12 C -0.121 4.121 13 C 0.142 3.858 14 N -0.610 5.610 15 C -0.265 4.265 16 H 0.074 0.926 17 C -0.054 4.054 18 N -0.939 5.939 19 Si 0.971 3.029 20 H -0.272 1.272 21 H -0.297 1.297 22 H -0.276 1.276 23 C 0.184 3.816 24 C -0.129 4.129 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.070 0.930 28 H 0.210 0.790 29 H 0.159 0.841 30 H 0.410 0.590 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.011 0.989 36 H 0.249 0.751 37 H -0.011 1.011 38 H 0.055 0.945 39 H 0.043 0.957 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.112 23.907 5.773 25.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.024 4.024 3 N -0.135 5.135 4 H 0.273 0.727 5 C -0.128 4.128 6 C -0.211 4.211 7 C -0.280 4.280 8 C 0.370 3.630 9 O -0.478 6.478 10 N -0.359 5.359 11 C 0.059 3.941 12 C -0.161 4.161 13 C 0.016 3.984 14 N -0.333 5.333 15 C -0.395 4.395 16 H 0.092 0.908 17 C -0.249 4.249 18 N -0.585 5.585 19 Si 0.799 3.201 20 H -0.198 1.198 21 H -0.223 1.223 22 H -0.202 1.202 23 C 0.058 3.942 24 C -0.169 4.169 25 H 0.098 0.902 26 H 0.111 0.889 27 H 0.088 0.912 28 H 0.227 0.773 29 H 0.176 0.824 30 H 0.246 0.754 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.029 0.971 36 H 0.058 0.942 37 H 0.007 0.993 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.189 23.761 5.700 25.207 hybrid contribution 0.053 -0.664 -0.761 1.012 sum 6.242 23.097 4.938 24.430 Atomic orbital electron populations 1.20515 0.86818 1.04080 1.03605 1.20453 0.94228 0.86278 1.01463 1.41591 1.06067 1.08560 1.57303 0.72685 1.22323 0.86352 0.96245 1.07901 1.22306 0.94982 0.94979 1.08858 1.20241 0.95472 0.91017 1.21266 1.17924 0.84996 0.85451 0.74673 1.90708 1.18459 1.85234 1.53359 1.45797 1.10104 1.05052 1.74921 1.20619 0.97791 0.80058 0.95636 1.22131 0.97428 0.95080 1.01415 1.21031 0.97365 0.94022 0.85943 1.44331 1.49309 1.26710 1.12964 1.19557 0.97511 1.02785 1.19644 0.90840 1.25898 0.95396 1.00300 1.03321 1.70212 1.06029 1.45435 1.36777 0.85284 0.77316 0.78806 0.78688 1.19782 1.22297 1.20235 1.20449 0.89342 0.87466 0.96965 1.22299 1.00306 0.97243 0.97081 0.90178 0.88934 0.91161 0.77341 0.82352 0.75368 0.92680 0.89209 0.90721 0.91312 0.97077 0.94168 0.99314 0.92695 0.93864 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.87 9.88 71.24 0.70 -1.17 16 2 C 0.10 2.05 7.17 41.78 0.30 2.35 16 3 N -0.54 -6.92 5.90 -182.72 -1.08 -7.99 16 4 H 0.43 2.24 8.96 -92.71 -0.83 1.41 16 5 C 0.00 -0.01 11.89 83.12 0.99 0.98 16 6 C -0.19 -3.49 10.56 23.62 0.25 -3.24 16 7 C -0.27 -7.12 6.29 -19.04 -0.12 -7.24 16 8 C 0.58 19.67 7.77 86.62 0.67 20.34 16 9 O -0.59 -24.85 14.48 -4.11 -0.06 -24.91 16 10 N -0.71 -21.85 5.07 -445.82 -2.26 -24.12 16 11 C 0.16 6.09 2.42 45.02 0.11 6.20 16 12 C -0.12 -4.02 5.55 30.67 0.17 -3.85 16 13 C 0.14 5.98 6.51 86.36 0.56 6.55 16 14 N -0.61 -31.84 3.00 -699.03 -2.10 -33.94 16 15 C -0.27 -14.86 9.58 84.03 0.81 -14.06 16 16 H 0.07 3.92 7.88 -2.91 -0.02 3.89 16 17 C -0.05 -3.10 4.92 84.86 0.42 -2.68 16 18 N -0.94 -57.88 11.20 21.65 0.24 -57.64 16 19 Si 0.97 45.69 29.59 68.60 2.03 47.72 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 21 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 23 C 0.18 9.73 5.30 86.36 0.46 10.19 16 24 C -0.13 -5.58 5.65 30.67 0.17 -5.41 16 25 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 26 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.07 1.94 6.47 -2.39 -0.02 1.92 16 28 H 0.21 0.79 8.06 -2.91 -0.02 0.76 16 29 H 0.16 2.32 7.69 -2.91 -0.02 2.29 16 30 H 0.41 9.88 7.72 -92.71 -0.72 9.17 16 31 H 0.05 2.36 7.58 -2.38 -0.02 2.34 16 32 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 33 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.07 2.71 7.93 -2.39 -0.02 2.69 16 35 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 37 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 38 H 0.05 3.24 6.07 -2.39 -0.01 3.22 16 39 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -77.02 325.87 1.78 -75.24 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -0.49 Total: 16.68 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 5.49 Total: 8.96 kcal Atomic # 7 Polarization: -118.49 SS G_CDS: -5.19 Total: -123.69 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.06 Total: -24.91 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -77.02 1.78 -75.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001002561037.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.368 kcal (2) G-P(sol) polarization free energy of solvation -77.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds