Wall clock time and date at job start Mon Mar 30 2020 01:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.34649 * 125.80004 * 2 1 4 4 H 0.97001 * 124.85922 * 0.05607 * 3 2 1 5 5 C 1.36457 * 110.29827 * 180.02562 * 3 2 1 6 6 C 1.34486 * 108.84911 * 359.97438 * 5 3 2 7 7 C 1.36772 * 125.79773 * 180.32959 * 2 1 3 8 8 C 1.47260 * 126.94612 * 359.96723 * 7 2 1 9 9 O 1.21635 * 119.99742 * 0.16750 * 8 7 2 10 10 N 1.34773 * 120.00176 * 180.17133 * 8 7 2 11 11 C 1.46501 * 120.00009 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.49442 * 34.93915 * 11 10 8 13 13 C 1.53042 * 109.49385 * 154.99877 * 11 10 8 14 14 C 1.53046 * 109.53347 * 181.31755 * 13 11 10 15 15 C 1.53192 * 109.31163 * 298.63568 * 14 13 11 16 16 N 1.46921 * 108.77731 * 54.64128 * 15 14 13 17 17 C 1.36930 * 120.63616 * 126.36608 * 16 15 14 18 18 H 1.08005 * 119.99713 * 332.79397 * 17 16 15 19 19 C 1.38807 * 120.00476 * 152.79096 * 17 16 15 20 20 N 1.31614 * 120.00431 * 159.75833 * 19 17 16 21 21 Si 1.86810 * 119.99815 * 339.75796 * 19 17 16 22 22 H 1.48502 * 109.46715 * 94.90717 * 21 19 17 23 23 H 1.48501 * 109.47078 * 214.90630 * 21 19 17 24 24 H 1.48494 * 109.46956 * 334.90465 * 21 19 17 25 25 C 1.46930 * 118.73651 * 306.38777 * 16 15 14 26 26 H 1.09001 * 109.47394 * 89.97382 * 1 2 3 27 27 H 1.09002 * 109.46947 * 209.97867 * 1 2 3 28 28 H 1.09009 * 109.46821 * 329.97524 * 1 2 3 29 29 H 1.07993 * 125.57475 * 179.97438 * 5 3 2 30 30 H 1.08003 * 126.82811 * 179.97438 * 6 5 3 31 31 H 0.97000 * 119.99855 * 0.02562 * 10 8 7 32 32 H 1.08996 * 109.46393 * 301.34058 * 13 11 10 33 33 H 1.09002 * 109.45879 * 61.31284 * 13 11 10 34 34 H 1.09000 * 109.49578 * 58.59259 * 14 13 11 35 35 H 1.09007 * 109.49271 * 178.68473 * 14 13 11 36 36 H 1.09008 * 109.58136 * 174.42308 * 15 14 13 37 37 H 1.08995 * 109.58786 * 294.84645 * 15 14 13 38 38 H 0.96996 * 120.00338 * 180.02562 * 20 19 17 39 39 H 1.09007 * 109.58499 * 293.82250 * 25 16 15 40 40 H 1.08995 * 109.58981 * 173.39680 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9735 2.0074 0.0008 5 6 3.6096 0.7274 -0.0006 6 6 3.6882 -0.6152 -0.0004 7 6 2.3071 -1.1093 -0.0064 8 6 1.8702 -2.5156 -0.0138 9 8 0.6838 -2.7839 -0.0178 10 7 2.7849 -3.5054 -0.0161 11 6 2.3503 -4.9045 -0.0229 12 1 1.4393 -4.9994 -0.6136 13 6 3.4487 -5.7775 -0.6341 14 6 2.9825 -7.2347 -0.6718 15 6 2.7187 -7.7194 0.7573 16 7 1.7714 -6.7993 1.4014 17 6 0.6233 -7.2716 1.9791 18 1 0.1743 -8.1857 1.6194 19 6 0.0364 -6.5757 3.0269 20 7 -1.2311 -6.7742 3.3207 21 14 1.0456 -5.3572 4.0202 22 1 0.8535 -3.9912 3.4705 23 1 0.6033 -5.3873 5.4375 24 1 2.4822 -5.7248 3.9422 25 6 2.0793 -5.3627 1.4135 26 1 -0.3634 0.0005 -1.0277 27 1 -0.3633 -0.8902 0.5135 28 1 -0.3633 0.8898 0.5143 29 1 4.4498 1.4059 -0.0011 30 1 4.5890 -1.2110 -0.0011 31 1 3.7310 -3.2915 -0.0125 32 1 3.6608 -5.4377 -1.6478 33 1 4.3521 -5.7010 -0.0290 34 1 2.0653 -7.3082 -1.2561 35 1 3.7559 -7.8524 -1.1285 36 1 2.2927 -8.7224 0.7302 37 1 3.6537 -7.7322 1.3173 38 1 -1.6413 -6.2876 4.0527 39 1 2.9623 -5.1834 2.0270 40 1 1.2316 -4.8107 1.8193 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007045468.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:49 Heat of formation + Delta-G solvation = 28.021440 kcal Electronic energy + Delta-G solvation = -22058.715313 eV Core-core repulsion = 18874.604824 eV Total energy + Delta-G solvation = -3184.110490 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.24278 -39.09050 -37.30294 -34.13131 -32.62972 -31.52924 -31.18878 -30.59134 -28.92678 -26.31744 -25.19317 -23.32221 -22.30014 -21.24401 -20.56416 -19.76473 -18.89488 -17.70717 -16.71976 -16.00428 -15.51150 -15.12452 -14.91846 -14.17084 -13.92191 -13.82566 -13.55992 -13.42901 -13.07500 -12.99204 -12.74309 -12.63101 -12.54008 -12.18483 -12.09431 -11.56557 -11.47314 -10.97891 -10.66479 -10.50919 -10.14042 -10.05757 -9.64256 -9.43418 -9.29416 -8.91097 -8.69574 -8.39319 -8.17445 -6.86446 -5.83999 -3.19846 1.86769 2.37710 3.04426 3.48587 3.57054 3.59662 3.73785 3.89228 4.65620 4.79253 4.90613 5.10766 5.17837 5.20286 5.34112 5.37007 5.51834 5.58627 5.60749 5.64865 5.80393 5.93807 5.96768 6.07071 6.15243 6.24380 6.31520 6.35320 6.55029 6.69722 6.71296 6.72410 6.78560 6.89623 6.95699 7.10138 7.35380 8.02305 8.08241 8.43568 8.79203 9.04480 9.83512 10.19868 11.31889 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018010 B = 0.006019 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.358421 B = 4650.599849 C = 5510.395333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.103 3.897 3 N -0.556 5.556 4 H 0.414 0.586 5 C -0.022 4.022 6 C -0.169 4.169 7 C -0.230 4.230 8 C 0.583 3.417 9 O -0.539 6.539 10 N -0.722 5.722 11 C 0.128 3.872 12 H 0.091 0.909 13 C -0.116 4.116 14 C -0.132 4.132 15 C 0.146 3.854 16 N -0.602 5.602 17 C -0.262 4.262 18 H 0.086 0.914 19 C 0.028 3.972 20 N -0.906 5.906 21 Si 0.880 3.120 22 H -0.286 1.286 23 H -0.305 1.305 24 H -0.271 1.271 25 C 0.121 3.879 26 H 0.077 0.923 27 H 0.105 0.895 28 H 0.061 0.939 29 H 0.167 0.833 30 H 0.144 0.856 31 H 0.393 0.607 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.022 0.978 38 H 0.262 0.738 39 H 0.024 0.976 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.027 15.018 -9.010 21.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.015 4.015 3 N -0.152 5.152 4 H 0.250 0.750 5 C -0.149 4.149 6 C -0.193 4.193 7 C -0.240 4.240 8 C 0.371 3.629 9 O -0.417 6.417 10 N -0.372 5.372 11 C 0.022 3.978 12 H 0.109 0.891 13 C -0.154 4.154 14 C -0.172 4.172 15 C 0.020 3.980 16 N -0.326 5.326 17 C -0.390 4.390 18 H 0.104 0.896 19 C -0.171 4.171 20 N -0.549 5.549 21 Si 0.710 3.290 22 H -0.214 1.214 23 H -0.233 1.233 24 H -0.196 1.196 25 C -0.006 4.006 26 H 0.096 0.904 27 H 0.123 0.877 28 H 0.080 0.920 29 H 0.185 0.815 30 H 0.161 0.839 31 H 0.226 0.774 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.040 0.960 38 H 0.072 0.928 39 H 0.041 0.959 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 11.000 14.929 -8.893 20.566 hybrid contribution 1.029 1.400 0.681 1.866 sum 12.030 16.328 -8.213 21.881 Atomic orbital electron populations 1.20603 0.86909 1.04420 1.03461 1.20384 0.93824 0.85592 1.01664 1.41577 1.06245 1.08310 1.59030 0.74986 1.21660 0.85646 0.96388 1.11207 1.22030 0.95853 0.93652 1.07776 1.20278 0.93138 0.92420 1.18145 1.17364 0.85630 0.83956 0.75943 1.90796 1.16458 1.84203 1.50282 1.45877 1.09164 1.06317 1.75868 1.21692 0.98091 0.78258 0.99735 0.89122 1.21679 0.97803 0.96107 0.99834 1.22004 1.00770 0.94604 0.99833 1.20973 0.92530 0.94025 0.90483 1.44292 1.22511 0.99903 1.65908 1.18895 0.98486 1.10386 1.11255 0.89607 1.25231 0.95891 0.98302 0.97668 1.69828 1.10030 1.43921 1.31128 0.86964 0.81277 0.81480 0.79248 1.21359 1.23300 1.19631 1.21690 0.99350 0.86090 0.93440 0.90437 0.87659 0.92014 0.81542 0.83859 0.77390 0.92495 0.92213 0.91660 0.92249 0.91725 0.95978 0.92849 0.95860 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 9.87 36.01 0.36 -0.85 16 2 C 0.10 1.37 7.17 -81.88 -0.59 0.78 16 3 N -0.56 -5.26 5.90 -9.11 -0.05 -5.31 16 4 H 0.41 2.42 8.96 -40.82 -0.37 2.05 16 5 C -0.02 -0.20 11.89 -16.82 -0.20 -0.40 16 6 C -0.17 -1.98 10.56 -37.50 -0.40 -2.38 16 7 C -0.23 -3.54 6.29 -103.35 -0.65 -4.19 16 8 C 0.58 11.04 7.78 -12.60 -0.10 10.94 16 9 O -0.54 -12.37 14.48 5.25 0.08 -12.29 16 10 N -0.72 -12.32 5.08 -54.82 -0.28 -12.60 16 11 C 0.13 2.50 2.61 -67.81 -0.18 2.32 16 12 H 0.09 2.03 7.57 -51.93 -0.39 1.63 16 13 C -0.12 -1.81 5.36 -26.69 -0.14 -1.96 16 14 C -0.13 -2.17 6.08 -26.61 -0.16 -2.33 16 15 C 0.15 2.92 6.52 -3.71 -0.02 2.90 16 16 N -0.60 -15.09 2.77 -172.32 -0.48 -15.57 16 17 C -0.26 -7.72 10.04 -15.06 -0.15 -7.87 16 18 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 19 C 0.03 0.87 5.24 -17.43 -0.09 0.78 16 20 N -0.91 -29.24 13.97 55.49 0.78 -28.47 16 21 Si 0.88 24.11 24.35 -169.99 -4.14 19.97 16 22 H -0.29 -7.95 6.70 56.52 0.38 -7.57 16 23 H -0.30 -8.35 7.11 56.52 0.40 -7.95 16 24 H -0.27 -7.19 6.45 56.52 0.36 -6.83 16 25 C 0.12 2.88 3.77 -3.71 -0.01 2.86 16 26 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.10 1.69 6.48 -51.93 -0.34 1.35 16 28 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 29 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 30 H 0.14 1.36 7.70 -52.48 -0.40 0.96 16 31 H 0.39 5.31 7.73 -40.82 -0.32 4.99 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 1.28 7.93 -51.92 -0.41 0.87 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.26 8.04 8.31 -40.82 -0.34 7.70 16 39 H 0.02 0.55 6.98 -51.92 -0.36 0.19 16 40 H 0.08 2.15 4.50 -51.93 -0.23 1.92 16 LS Contribution 319.25 15.07 4.81 4.81 Total: -1.00 -36.85 319.25 -7.45 -44.30 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -5.82 Total: 4.56 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -2.34 Total: 0.59 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: -0.03 Total: -61.95 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.08 Total: -12.29 kcal Atomic # 14 Polarization: 24.11 SS G_CDS: -4.14 Total: 19.97 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -36.85 -7.45 -44.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007045468.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.322 kcal (2) G-P(sol) polarization free energy of solvation -36.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds