Wall clock time and date at job start Mon Mar 30 2020 01:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.34649 * 125.80004 * 2 1 4 4 H 0.97001 * 124.85922 * 0.05607 * 3 2 1 5 5 C 1.36457 * 110.29827 * 180.02562 * 3 2 1 6 6 C 1.34486 * 108.84911 * 359.97438 * 5 3 2 7 7 C 1.36772 * 125.79773 * 180.32959 * 2 1 3 8 8 C 1.47260 * 126.94612 * 359.96723 * 7 2 1 9 9 O 1.21635 * 119.99742 * 0.16750 * 8 7 2 10 10 N 1.34773 * 120.00176 * 180.17133 * 8 7 2 11 11 C 1.46501 * 120.00009 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.49442 * 34.93915 * 11 10 8 13 13 C 1.53042 * 109.49385 * 154.99877 * 11 10 8 14 14 C 1.53046 * 109.53347 * 181.31755 * 13 11 10 15 15 C 1.53192 * 109.31163 * 298.63568 * 14 13 11 16 16 N 1.46921 * 108.77731 * 54.64128 * 15 14 13 17 17 C 1.36930 * 120.63616 * 126.36608 * 16 15 14 18 18 H 1.08005 * 119.99713 * 332.79397 * 17 16 15 19 19 C 1.38807 * 120.00476 * 152.79096 * 17 16 15 20 20 N 1.31614 * 120.00431 * 159.75833 * 19 17 16 21 21 Si 1.86810 * 119.99815 * 339.75796 * 19 17 16 22 22 H 1.48502 * 109.46715 * 94.90717 * 21 19 17 23 23 H 1.48501 * 109.47078 * 214.90630 * 21 19 17 24 24 H 1.48494 * 109.46956 * 334.90465 * 21 19 17 25 25 C 1.46930 * 118.73651 * 306.38777 * 16 15 14 26 26 H 1.09001 * 109.47394 * 89.97382 * 1 2 3 27 27 H 1.09002 * 109.46947 * 209.97867 * 1 2 3 28 28 H 1.09009 * 109.46821 * 329.97524 * 1 2 3 29 29 H 1.07993 * 125.57475 * 179.97438 * 5 3 2 30 30 H 1.08003 * 126.82811 * 179.97438 * 6 5 3 31 31 H 0.97000 * 119.99855 * 0.02562 * 10 8 7 32 32 H 1.08996 * 109.46393 * 301.34058 * 13 11 10 33 33 H 1.09002 * 109.45879 * 61.31284 * 13 11 10 34 34 H 1.09000 * 109.49578 * 58.59259 * 14 13 11 35 35 H 1.09007 * 109.49271 * 178.68473 * 14 13 11 36 36 H 1.09008 * 109.58136 * 174.42308 * 15 14 13 37 37 H 1.08995 * 109.58786 * 294.84645 * 15 14 13 38 38 H 0.96996 * 120.00338 * 180.02562 * 20 19 17 39 39 H 1.09007 * 109.58499 * 293.82250 * 25 16 15 40 40 H 1.08995 * 109.58981 * 173.39680 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9735 2.0074 0.0008 5 6 3.6096 0.7274 -0.0006 6 6 3.6882 -0.6152 -0.0004 7 6 2.3071 -1.1093 -0.0064 8 6 1.8702 -2.5156 -0.0138 9 8 0.6838 -2.7839 -0.0178 10 7 2.7849 -3.5054 -0.0161 11 6 2.3503 -4.9045 -0.0229 12 1 1.4393 -4.9994 -0.6136 13 6 3.4487 -5.7775 -0.6341 14 6 2.9825 -7.2347 -0.6718 15 6 2.7187 -7.7194 0.7573 16 7 1.7714 -6.7993 1.4014 17 6 0.6233 -7.2716 1.9791 18 1 0.1743 -8.1857 1.6194 19 6 0.0364 -6.5757 3.0269 20 7 -1.2311 -6.7742 3.3207 21 14 1.0456 -5.3572 4.0202 22 1 0.8535 -3.9912 3.4705 23 1 0.6033 -5.3873 5.4375 24 1 2.4822 -5.7248 3.9422 25 6 2.0793 -5.3627 1.4135 26 1 -0.3634 0.0005 -1.0277 27 1 -0.3633 -0.8902 0.5135 28 1 -0.3633 0.8898 0.5143 29 1 4.4498 1.4059 -0.0011 30 1 4.5890 -1.2110 -0.0011 31 1 3.7310 -3.2915 -0.0125 32 1 3.6608 -5.4377 -1.6478 33 1 4.3521 -5.7010 -0.0290 34 1 2.0653 -7.3082 -1.2561 35 1 3.7559 -7.8524 -1.1285 36 1 2.2927 -8.7224 0.7302 37 1 3.6537 -7.7322 1.3173 38 1 -1.6413 -6.2876 4.0527 39 1 2.9623 -5.1834 2.0270 40 1 1.2316 -4.8107 1.8193 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007045468.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:49 Heat of formation + Delta-G solvation = -0.507324 kcal Electronic energy + Delta-G solvation = -22059.952413 eV Core-core repulsion = 18874.604824 eV Total energy + Delta-G solvation = -3185.347590 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.16857 -40.56446 -38.93662 -35.84985 -34.47006 -32.64741 -32.46006 -32.20103 -30.39606 -27.31579 -27.18815 -24.78102 -23.98204 -22.63429 -21.51618 -21.31958 -20.24974 -18.85248 -18.57658 -17.64497 -16.90903 -16.71479 -16.22746 -15.90547 -15.49129 -15.24770 -15.02428 -14.71202 -14.47780 -14.39705 -14.03957 -14.01134 -13.81813 -13.61280 -13.46443 -13.39828 -12.65416 -12.55335 -12.48890 -12.43613 -11.79456 -11.68160 -11.63003 -11.34489 -10.83867 -10.80375 -10.15683 -9.74411 -9.12698 -8.92442 -8.21765 -5.51854 0.73889 1.26635 1.28248 1.38797 1.56344 2.10784 2.37299 2.51848 2.59659 3.04990 3.39826 3.81987 3.90561 4.06140 4.08800 4.17657 4.25672 4.33410 4.35466 4.42851 4.63690 4.66724 4.68120 4.81361 4.90008 4.97309 5.01993 5.05497 5.10604 5.16425 5.24128 5.28940 5.50900 5.59872 5.79454 5.84468 5.97937 6.08809 6.63742 6.77102 6.88541 7.43074 7.59731 7.99459 8.98137 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018010 B = 0.006019 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.358421 B = 4650.599849 C = 5510.395333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.092 3.908 3 N -0.537 5.537 4 H 0.434 0.566 5 C 0.002 3.998 6 C -0.185 4.185 7 C -0.271 4.271 8 C 0.572 3.428 9 O -0.596 6.596 10 N -0.709 5.709 11 C 0.138 3.862 12 H 0.051 0.949 13 C -0.106 4.106 14 C -0.124 4.124 15 C 0.137 3.863 16 N -0.618 5.618 17 C -0.248 4.248 18 H 0.058 0.942 19 C -0.033 4.033 20 N -0.955 5.955 21 Si 0.945 3.055 22 H -0.301 1.301 23 H -0.305 1.305 24 H -0.251 1.251 25 C 0.122 3.878 26 H 0.082 0.918 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.215 0.785 30 H 0.165 0.835 31 H 0.413 0.587 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.105 0.895 36 H 0.058 0.942 37 H 0.045 0.955 38 H 0.260 0.740 39 H 0.035 0.965 40 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.431 17.320 -10.108 25.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.028 4.028 3 N -0.134 5.134 4 H 0.274 0.726 5 C -0.125 4.125 6 C -0.209 4.209 7 C -0.281 4.281 8 C 0.363 3.637 9 O -0.478 6.478 10 N -0.360 5.360 11 C 0.031 3.969 12 H 0.070 0.930 13 C -0.144 4.144 14 C -0.164 4.164 15 C 0.013 3.987 16 N -0.343 5.343 17 C -0.377 4.377 18 H 0.076 0.924 19 C -0.228 4.228 20 N -0.601 5.601 21 Si 0.775 3.225 22 H -0.230 1.230 23 H -0.234 1.234 24 H -0.175 1.175 25 C -0.005 4.005 26 H 0.101 0.899 27 H 0.080 0.920 28 H 0.112 0.888 29 H 0.231 0.769 30 H 0.182 0.818 31 H 0.251 0.749 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.123 0.877 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 15.509 17.256 -10.019 25.272 hybrid contribution -0.344 0.706 0.927 1.215 sum 15.165 17.962 -9.092 25.205 Atomic orbital electron populations 1.20502 0.87273 1.03752 1.03628 1.20397 0.94080 0.86543 1.01739 1.41575 1.06138 1.08415 1.57269 0.72639 1.22384 0.86237 0.96252 1.07629 1.22318 0.94665 0.94991 1.08890 1.20262 0.95896 0.90746 1.21239 1.18078 0.85046 0.85836 0.74752 1.90768 1.18894 1.85268 1.52919 1.45677 1.10110 1.05009 1.75210 1.21328 0.98696 0.80445 0.96440 0.93040 1.21663 0.96675 0.94316 1.01700 1.21928 1.01560 0.95902 0.96966 1.21271 0.91964 0.92895 0.92599 1.44458 1.22393 1.01353 1.66139 1.18918 0.99575 1.08878 1.10374 0.92431 1.25859 0.96719 1.00931 0.99295 1.69952 1.11641 1.46244 1.32251 0.85917 0.80789 0.78534 0.77262 1.22967 1.23377 1.17454 1.21621 0.97648 0.84955 0.96240 0.89915 0.92046 0.88847 0.76888 0.81783 0.74942 0.89359 0.89578 0.93494 0.87675 0.92334 0.93703 0.93119 0.94693 0.95030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.40 9.87 71.24 0.70 -1.70 16 2 C 0.09 2.35 7.17 41.79 0.30 2.65 16 3 N -0.54 -8.29 5.90 -182.72 -1.08 -9.37 16 4 H 0.43 3.29 8.96 -92.71 -0.83 2.46 16 5 C 0.00 0.03 11.89 83.11 0.99 1.02 16 6 C -0.19 -3.74 10.56 23.62 0.25 -3.49 16 7 C -0.27 -8.15 6.29 -19.04 -0.12 -8.27 16 8 C 0.57 22.23 7.78 86.62 0.67 22.91 16 9 O -0.60 -29.35 14.48 -4.14 -0.06 -29.41 16 10 N -0.71 -23.64 5.08 -445.58 -2.26 -25.90 16 11 C 0.14 5.32 2.61 45.07 0.12 5.44 16 12 H 0.05 2.40 7.57 -2.39 -0.02 2.38 16 13 C -0.11 -2.92 5.36 30.62 0.16 -2.76 16 14 C -0.12 -3.70 6.08 30.67 0.19 -3.51 16 15 C 0.14 5.24 6.52 86.36 0.56 5.80 16 16 N -0.62 -31.20 2.77 -699.10 -1.94 -33.14 16 17 C -0.25 -15.15 10.04 84.03 0.84 -14.31 16 18 H 0.06 3.76 8.06 -2.91 -0.02 3.74 16 19 C -0.03 -2.12 5.24 84.86 0.44 -1.68 16 20 N -0.95 -64.83 13.97 21.65 0.30 -64.53 16 21 Si 0.94 52.11 24.35 68.60 1.67 53.78 16 22 H -0.30 -17.20 6.70 99.48 0.67 -16.53 16 23 H -0.31 -16.61 7.11 99.48 0.71 -15.90 16 24 H -0.25 -12.76 6.45 99.48 0.64 -12.12 16 25 C 0.12 5.81 3.77 86.36 0.33 6.13 16 26 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.06 2.15 6.48 -2.39 -0.02 2.13 16 28 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.21 0.95 8.06 -2.91 -0.02 0.93 16 30 H 0.16 2.44 7.70 -2.91 -0.02 2.42 16 31 H 0.41 10.10 7.73 -92.71 -0.72 9.38 16 32 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 36 H 0.06 2.28 7.93 -2.38 -0.02 2.26 16 37 H 0.04 1.55 8.14 -2.39 -0.02 1.54 16 38 H 0.26 16.83 8.31 -92.71 -0.77 16.06 16 39 H 0.04 1.58 6.98 -2.38 -0.02 1.57 16 40 H 0.03 1.81 4.50 -2.39 -0.01 1.80 16 Total: -1.00 -88.37 319.25 1.48 -86.89 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -0.59 Total: 13.44 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 5.44 Total: 8.24 kcal Atomic # 7 Polarization: -127.96 SS G_CDS: -4.98 Total: -132.94 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -0.06 Total: -29.41 kcal Atomic # 14 Polarization: 52.11 SS G_CDS: 1.67 Total: 53.78 kcal Total: -88.37 1.48 -86.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007045468.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.380 kcal (2) G-P(sol) polarization free energy of solvation -88.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds