Wall clock time and date at job start Mon Mar 30 2020 02:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39838 * 126.46069 * 2 1 4 4 C 1.35454 * 107.86654 * 179.97438 * 3 2 1 5 5 N 1.35530 * 108.86993 * 359.73322 * 4 3 2 6 6 H 0.96999 * 125.68190 * 180.30389 * 5 4 3 7 7 C 1.37657 * 108.64537 * 0.43258 * 5 4 3 8 8 C 1.46674 * 126.23061 * 179.82824 * 7 5 4 9 9 O 1.21703 * 119.99807 * 179.69205 * 8 7 5 10 10 N 1.34773 * 120.00661 * 359.69748 * 8 7 5 11 11 C 1.46502 * 120.00471 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.49202 * 324.93103 * 11 10 8 13 13 C 1.53102 * 109.51381 * 204.87114 * 11 10 8 14 14 C 1.53042 * 109.50241 * 178.68323 * 13 11 10 15 15 C 1.53195 * 109.33847 * 61.34678 * 14 13 11 16 16 N 1.46924 * 108.77298 * 305.35097 * 15 14 13 17 17 C 1.36940 * 120.62915 * 233.63005 * 16 15 14 18 18 H 1.07988 * 120.00500 * 151.84177 * 17 16 15 19 19 C 1.38819 * 119.99895 * 331.84076 * 17 16 15 20 20 N 1.31619 * 119.99679 * 343.06557 * 19 17 16 21 21 Si 1.86797 * 120.00224 * 163.06698 * 19 17 16 22 22 H 1.48503 * 109.47079 * 89.99816 * 21 19 17 23 23 H 1.48498 * 109.47215 * 210.00127 * 21 19 17 24 24 H 1.48499 * 109.46927 * 330.00030 * 21 19 17 25 25 C 1.46918 * 118.74217 * 53.60949 * 16 15 14 26 26 H 1.09003 * 109.47054 * 270.04461 * 1 2 3 27 27 H 1.09002 * 109.47297 * 30.03399 * 1 2 3 28 28 H 1.09000 * 109.47426 * 150.04097 * 1 2 3 29 29 H 1.07997 * 126.06301 * 359.92988 * 3 2 1 30 30 H 1.07993 * 125.56476 * 180.02562 * 4 3 2 31 31 H 0.97009 * 119.99751 * 359.97438 * 10 8 7 32 32 H 1.08999 * 109.51154 * 58.65520 * 13 11 10 33 33 H 1.09007 * 109.45222 * 298.67338 * 13 11 10 34 34 H 1.08995 * 109.49740 * 301.37940 * 14 13 11 35 35 H 1.09006 * 109.49666 * 181.31292 * 14 13 11 36 36 H 1.09006 * 109.58639 * 65.13974 * 15 14 13 37 37 H 1.09002 * 109.58541 * 185.41831 * 15 14 13 38 38 H 0.97009 * 119.99606 * 180.02562 * 20 19 17 39 39 H 1.09004 * 109.58657 * 66.17967 * 25 16 15 40 40 H 1.09004 * 109.59000 * 186.45895 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6928 0.0006 5 7 3.6283 -0.6625 0.0069 6 1 4.4189 -1.2245 0.0128 7 6 2.3262 -1.1089 0.0006 8 6 1.8898 -2.5093 0.0008 9 8 0.7025 -2.7766 0.0004 10 7 2.8035 -3.5000 0.0014 11 6 2.3676 -4.8986 0.0021 12 1 1.4564 -4.9953 0.5925 13 6 3.4654 -5.7761 0.6096 14 6 2.9966 -7.2326 0.6403 15 6 2.7315 -7.7106 -0.7908 16 7 1.7855 -6.7862 -1.4304 17 6 0.6363 -7.2543 -2.0098 18 1 -0.2370 -6.6215 -2.0652 19 6 0.5941 -8.5422 -2.5259 20 7 1.7132 -9.1918 -2.7665 21 14 -1.0511 -9.3534 -2.8791 22 1 -1.4645 -9.0482 -4.2724 23 1 -0.9244 -10.8234 -2.7111 24 1 -2.0722 -8.8334 -1.9347 25 6 2.0954 -5.3501 -1.4362 26 1 -0.3633 0.0008 1.0277 27 1 -0.3634 0.8897 -0.5144 28 1 -0.3634 -0.8903 -0.5132 29 1 2.0137 2.1548 -0.0011 30 1 4.4973 1.3251 0.0011 31 1 3.7499 -3.2869 0.0013 32 1 3.6785 -5.4417 1.6249 33 1 4.3688 -5.6981 0.0047 34 1 2.0795 -7.3074 1.2246 35 1 3.7689 -7.8538 1.0942 36 1 3.6665 -7.7224 -1.3512 37 1 2.3065 -8.7141 -0.7681 38 1 1.6837 -10.0917 -3.1275 39 1 2.9784 -5.1693 -2.0493 40 1 1.2493 -4.7952 -1.8417 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007237103.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:45 Heat of formation + Delta-G solvation = 21.883156 kcal Electronic energy + Delta-G solvation = -21658.094416 eV Core-core repulsion = 18473.717751 eV Total energy + Delta-G solvation = -3184.376666 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.37554 -39.15376 -37.23040 -34.42201 -32.74714 -32.21808 -30.48134 -30.05927 -28.45598 -26.71785 -25.28265 -23.01438 -22.11480 -21.47475 -20.47183 -19.73793 -18.90396 -18.42046 -16.76376 -15.74935 -15.50847 -15.18413 -14.69648 -14.21788 -13.86134 -13.76401 -13.71301 -13.33106 -13.13773 -12.93586 -12.62600 -12.41309 -12.38496 -12.25116 -11.82433 -11.56820 -11.09463 -10.90857 -10.75830 -10.27601 -10.25314 -9.96374 -9.90237 -9.64496 -9.53545 -8.88274 -8.86844 -8.41883 -8.18460 -6.66081 -5.77474 -3.19797 1.48474 2.65980 2.99849 3.32873 3.41111 3.47534 3.52404 3.53342 4.53574 4.87067 4.92354 5.13489 5.22787 5.31034 5.38308 5.52364 5.60933 5.68541 5.71718 5.86462 5.92272 6.06058 6.12043 6.12347 6.21163 6.37311 6.50523 6.58966 6.62280 6.65046 6.71094 6.82754 6.91027 6.99216 7.26770 7.35037 7.64151 7.72481 7.84801 8.39972 8.48194 9.23353 9.85451 10.41149 11.31409 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025600 B = 0.004229 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.480090 B = 6619.256330 C = 7339.153173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.078 4.078 3 C -0.213 4.213 4 C 0.018 3.982 5 N -0.542 5.542 6 H 0.415 0.585 7 C -0.053 4.053 8 C 0.583 3.417 9 O -0.521 6.521 10 N -0.724 5.724 11 C 0.127 3.873 12 H 0.088 0.912 13 C -0.115 4.115 14 C -0.140 4.140 15 C 0.168 3.832 16 N -0.587 5.587 17 C -0.251 4.251 18 H 0.067 0.933 19 C 0.003 3.997 20 N -0.905 5.905 21 Si 0.903 3.097 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.278 1.278 25 C 0.143 3.857 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.141 0.859 30 H 0.169 0.831 31 H 0.386 0.614 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.018 0.982 37 H 0.089 0.911 38 H 0.253 0.747 39 H 0.015 0.985 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.357 16.766 7.640 19.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 C -0.237 4.237 4 C -0.117 4.117 5 N -0.138 5.138 6 H 0.252 0.748 7 C -0.166 4.166 8 C 0.370 3.630 9 O -0.396 6.396 10 N -0.374 5.374 11 C 0.022 3.978 12 H 0.107 0.893 13 C -0.153 4.153 14 C -0.179 4.179 15 C 0.042 3.958 16 N -0.310 5.310 17 C -0.381 4.381 18 H 0.085 0.915 19 C -0.196 4.196 20 N -0.549 5.549 21 Si 0.732 3.268 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.203 1.203 25 C 0.015 3.985 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.159 0.841 30 H 0.186 0.814 31 H 0.219 0.781 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.036 0.964 37 H 0.108 0.892 38 H 0.063 0.937 39 H 0.033 0.967 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.585 16.221 7.559 19.069 hybrid contribution 0.363 -0.491 -0.241 0.656 sum 6.948 15.731 7.317 18.689 Atomic orbital electron populations 1.20349 0.89318 1.02992 1.02130 1.19966 0.95952 0.90772 1.01972 1.20789 0.91882 0.98727 1.12346 1.21946 0.99466 0.83006 1.07288 1.41957 1.07236 1.07229 1.57355 0.74791 1.20432 0.83557 0.93921 1.18658 1.17052 0.86170 0.82848 0.76908 1.90845 1.15890 1.83034 1.49854 1.46057 1.08574 1.07156 1.75621 1.21785 0.98141 0.77283 1.00570 0.89346 1.21692 0.97615 0.96791 0.99179 1.22185 1.00119 0.93836 1.01799 1.20832 0.92404 0.95657 0.86914 1.43990 1.23095 0.99731 1.64181 1.19225 0.88969 0.98217 1.31639 0.91534 1.25030 0.96821 0.99167 0.98545 1.70040 1.24960 1.12881 1.47051 0.86286 0.83748 0.78501 0.78234 1.21359 1.21559 1.20341 1.21179 0.98426 0.87127 0.91777 0.91666 0.92192 0.89882 0.84144 0.81403 0.78117 0.93139 0.92368 0.92334 0.92710 0.96372 0.89249 0.93682 0.96669 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.17 9.83 36.00 0.35 -0.82 16 2 C -0.08 -1.04 6.21 -104.16 -0.65 -1.68 16 3 C -0.21 -2.22 10.76 -39.98 -0.43 -2.65 16 4 C 0.02 0.16 11.89 -16.91 -0.20 -0.04 16 5 N -0.54 -5.12 5.99 -9.39 -0.06 -5.17 16 6 H 0.42 2.66 8.19 -40.82 -0.33 2.33 16 7 C -0.05 -0.72 7.06 -81.98 -0.58 -1.30 16 8 C 0.58 9.53 7.75 -12.86 -0.10 9.43 16 9 O -0.52 -10.52 14.47 5.19 0.08 -10.44 16 10 N -0.72 -10.59 5.08 -54.97 -0.28 -10.87 16 11 C 0.13 2.30 2.60 -67.78 -0.18 2.12 16 12 H 0.09 1.83 7.58 -51.93 -0.39 1.44 16 13 C -0.11 -1.84 5.36 -26.66 -0.14 -1.98 16 14 C -0.14 -2.60 6.08 -26.61 -0.16 -2.76 16 15 C 0.17 3.97 5.30 -3.71 -0.02 3.95 16 16 N -0.59 -15.06 2.99 -172.32 -0.52 -15.57 16 17 C -0.25 -7.13 9.58 -15.06 -0.14 -7.27 16 18 H 0.07 1.90 7.88 -52.49 -0.41 1.49 16 19 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 20 N -0.90 -26.42 11.19 55.49 0.62 -25.80 16 21 Si 0.90 22.18 29.59 -169.99 -5.03 17.15 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.14 3.15 6.09 -3.72 -0.02 3.13 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 1.27 6.48 -51.93 -0.34 0.94 16 29 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 30 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 31 H 0.39 4.25 7.73 -40.82 -0.32 3.93 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.09 2.37 6.06 -51.93 -0.31 2.06 16 38 H 0.25 7.13 8.31 -40.82 -0.34 6.80 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.06 1.41 7.93 -51.93 -0.41 1.00 16 LS Contribution 325.49 15.07 4.91 4.91 Total: -1.00 -33.31 325.49 -8.52 -41.83 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -5.88 Total: 3.86 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -2.36 Total: 0.12 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -0.23 Total: -57.42 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.08 Total: -10.44 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.31 -8.52 -41.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007237103.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.710 kcal (2) G-P(sol) polarization free energy of solvation -33.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds