Wall clock time and date at job start Mon Mar 30 2020 02:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39838 * 126.46069 * 2 1 4 4 C 1.35454 * 107.86654 * 179.97438 * 3 2 1 5 5 N 1.35530 * 108.86993 * 359.73322 * 4 3 2 6 6 H 0.96999 * 125.68190 * 180.30389 * 5 4 3 7 7 C 1.37657 * 108.64537 * 0.43258 * 5 4 3 8 8 C 1.46674 * 126.23061 * 179.82824 * 7 5 4 9 9 O 1.21703 * 119.99807 * 179.69205 * 8 7 5 10 10 N 1.34773 * 120.00661 * 359.69748 * 8 7 5 11 11 C 1.46502 * 120.00471 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.49202 * 324.93103 * 11 10 8 13 13 C 1.53102 * 109.51381 * 204.87114 * 11 10 8 14 14 C 1.53042 * 109.50241 * 178.68323 * 13 11 10 15 15 C 1.53195 * 109.33847 * 61.34678 * 14 13 11 16 16 N 1.46924 * 108.77298 * 305.35097 * 15 14 13 17 17 C 1.36940 * 120.62915 * 233.63005 * 16 15 14 18 18 H 1.07988 * 120.00500 * 151.84177 * 17 16 15 19 19 C 1.38819 * 119.99895 * 331.84076 * 17 16 15 20 20 N 1.31619 * 119.99679 * 343.06557 * 19 17 16 21 21 Si 1.86797 * 120.00224 * 163.06698 * 19 17 16 22 22 H 1.48503 * 109.47079 * 89.99816 * 21 19 17 23 23 H 1.48498 * 109.47215 * 210.00127 * 21 19 17 24 24 H 1.48499 * 109.46927 * 330.00030 * 21 19 17 25 25 C 1.46918 * 118.74217 * 53.60949 * 16 15 14 26 26 H 1.09003 * 109.47054 * 270.04461 * 1 2 3 27 27 H 1.09002 * 109.47297 * 30.03399 * 1 2 3 28 28 H 1.09000 * 109.47426 * 150.04097 * 1 2 3 29 29 H 1.07997 * 126.06301 * 359.92988 * 3 2 1 30 30 H 1.07993 * 125.56476 * 180.02562 * 4 3 2 31 31 H 0.97009 * 119.99751 * 359.97438 * 10 8 7 32 32 H 1.08999 * 109.51154 * 58.65520 * 13 11 10 33 33 H 1.09007 * 109.45222 * 298.67338 * 13 11 10 34 34 H 1.08995 * 109.49740 * 301.37940 * 14 13 11 35 35 H 1.09006 * 109.49666 * 181.31292 * 14 13 11 36 36 H 1.09006 * 109.58639 * 65.13974 * 15 14 13 37 37 H 1.09002 * 109.58541 * 185.41831 * 15 14 13 38 38 H 0.97009 * 119.99606 * 180.02562 * 20 19 17 39 39 H 1.09004 * 109.58657 * 66.17967 * 25 16 15 40 40 H 1.09004 * 109.59000 * 186.45895 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6928 0.0006 5 7 3.6283 -0.6625 0.0069 6 1 4.4189 -1.2245 0.0128 7 6 2.3262 -1.1089 0.0006 8 6 1.8898 -2.5093 0.0008 9 8 0.7025 -2.7766 0.0004 10 7 2.8035 -3.5000 0.0014 11 6 2.3676 -4.8986 0.0021 12 1 1.4564 -4.9953 0.5925 13 6 3.4654 -5.7761 0.6096 14 6 2.9966 -7.2326 0.6403 15 6 2.7315 -7.7106 -0.7908 16 7 1.7855 -6.7862 -1.4304 17 6 0.6363 -7.2543 -2.0098 18 1 -0.2370 -6.6215 -2.0652 19 6 0.5941 -8.5422 -2.5259 20 7 1.7132 -9.1918 -2.7665 21 14 -1.0511 -9.3534 -2.8791 22 1 -1.4645 -9.0482 -4.2724 23 1 -0.9244 -10.8234 -2.7111 24 1 -2.0722 -8.8334 -1.9347 25 6 2.0954 -5.3501 -1.4362 26 1 -0.3633 0.0008 1.0277 27 1 -0.3634 0.8897 -0.5144 28 1 -0.3634 -0.8903 -0.5132 29 1 2.0137 2.1548 -0.0011 30 1 4.4973 1.3251 0.0011 31 1 3.7499 -3.2869 0.0013 32 1 3.6785 -5.4417 1.6249 33 1 4.3688 -5.6981 0.0047 34 1 2.0795 -7.3074 1.2246 35 1 3.7689 -7.8538 1.0942 36 1 3.6665 -7.7224 -1.3512 37 1 2.3065 -8.7141 -0.7681 38 1 1.6837 -10.0917 -3.1275 39 1 2.9784 -5.1693 -2.0493 40 1 1.2493 -4.7952 -1.8417 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007237103.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:44 Heat of formation + Delta-G solvation = -1.298131 kcal Electronic energy + Delta-G solvation = -21659.099632 eV Core-core repulsion = 18473.717751 eV Total energy + Delta-G solvation = -3185.381882 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.27267 -40.48179 -38.83948 -36.03379 -34.29689 -33.35715 -32.37133 -31.25294 -29.76130 -27.75881 -27.28009 -24.36569 -23.90336 -22.70056 -21.46741 -21.29237 -20.01423 -19.46233 -18.74289 -17.16687 -16.83338 -16.53181 -16.35136 -15.76044 -15.42094 -15.08058 -14.94712 -14.62820 -14.47949 -14.25518 -14.03794 -13.87546 -13.59157 -13.41909 -13.15269 -13.04747 -12.76152 -12.60496 -12.52827 -12.16537 -11.99603 -11.78426 -11.61373 -11.34945 -10.96219 -10.64672 -10.22130 -9.67208 -9.10595 -8.71171 -7.93198 -5.39039 0.48948 1.43047 1.43983 1.55280 1.86568 2.04407 2.28573 2.36926 2.49601 3.21383 3.67591 3.79578 3.98052 4.07247 4.20353 4.27892 4.28950 4.41812 4.44329 4.53151 4.77095 4.87040 4.87955 4.89685 4.97398 5.02315 5.08556 5.11755 5.18418 5.23151 5.41235 5.48687 5.52526 5.60445 5.73515 5.80224 5.99824 6.34441 6.52138 6.67421 7.10387 7.21117 7.79513 8.29509 9.12579 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025600 B = 0.004229 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.480090 B = 6619.256330 C = 7339.153173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.096 4.096 3 C -0.231 4.231 4 C 0.053 3.947 5 N -0.528 5.528 6 H 0.431 0.569 7 C -0.088 4.088 8 C 0.579 3.421 9 O -0.572 6.572 10 N -0.709 5.709 11 C 0.144 3.856 12 H 0.058 0.942 13 C -0.103 4.103 14 C -0.130 4.130 15 C 0.172 3.828 16 N -0.607 5.607 17 C -0.272 4.272 18 H 0.052 0.948 19 C -0.041 4.041 20 N -0.929 5.929 21 Si 0.965 3.035 22 H -0.283 1.283 23 H -0.283 1.283 24 H -0.276 1.276 25 C 0.146 3.854 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.049 0.951 29 H 0.161 0.839 30 H 0.218 0.782 31 H 0.408 0.592 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.047 0.953 35 H 0.086 0.914 36 H 0.006 0.994 37 H 0.055 0.945 38 H 0.253 0.747 39 H 0.020 0.980 40 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.731 18.739 8.760 22.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 C -0.255 4.255 4 C -0.084 4.084 5 N -0.125 5.125 6 H 0.271 0.729 7 C -0.200 4.200 8 C 0.369 3.631 9 O -0.452 6.452 10 N -0.360 5.360 11 C 0.037 3.963 12 H 0.076 0.924 13 C -0.141 4.141 14 C -0.170 4.170 15 C 0.047 3.953 16 N -0.331 5.331 17 C -0.402 4.402 18 H 0.069 0.931 19 C -0.237 4.237 20 N -0.574 5.574 21 Si 0.793 3.207 22 H -0.210 1.210 23 H -0.209 1.209 24 H -0.201 1.201 25 C 0.019 3.981 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.179 0.821 30 H 0.234 0.766 31 H 0.245 0.755 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.105 0.895 36 H 0.024 0.976 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.037 0.963 40 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 9.027 18.209 8.694 22.105 hybrid contribution -0.340 -0.975 -0.631 1.210 sum 8.687 17.234 8.063 20.916 Atomic orbital electron populations 1.20296 0.90152 1.02293 1.01951 1.20272 0.96086 0.92163 1.02003 1.21105 0.92286 0.98932 1.13159 1.22731 1.00374 0.82543 1.02798 1.41935 1.06261 1.08009 1.56309 0.72933 1.19962 0.85659 0.92161 1.22232 1.17519 0.85592 0.84249 0.75746 1.90819 1.18116 1.84014 1.52242 1.45743 1.09653 1.05428 1.75160 1.21277 0.98312 0.79572 0.97103 0.92388 1.21623 0.96888 0.94167 1.01446 1.22024 1.00857 0.96188 0.97883 1.20721 0.90841 0.93985 0.89802 1.44215 1.22853 1.01326 1.64689 1.19390 0.89824 0.98737 1.32222 0.93064 1.25722 1.00034 0.99417 0.98572 1.70163 1.26633 1.12949 1.47652 0.85319 0.79876 0.77554 0.77971 1.20981 1.20886 1.20125 1.21196 0.97107 0.85201 0.94610 0.91645 0.90136 0.93211 0.82094 0.76561 0.75531 0.89430 0.90446 0.93423 0.89510 0.97629 0.92670 0.93788 0.96255 0.95416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.39 9.83 71.23 0.70 -1.69 16 2 C -0.10 -2.47 6.21 -19.57 -0.12 -2.59 16 3 C -0.23 -4.11 10.76 22.01 0.24 -3.87 16 4 C 0.05 0.65 11.89 83.48 0.99 1.64 16 5 N -0.53 -8.18 5.99 -183.63 -1.10 -9.28 16 6 H 0.43 3.77 8.19 -92.71 -0.76 3.01 16 7 C -0.09 -2.28 7.06 40.35 0.28 -2.00 16 8 C 0.58 19.25 7.75 86.45 0.67 19.92 16 9 O -0.57 -24.62 14.47 -4.36 -0.06 -24.68 16 10 N -0.71 -20.12 5.08 -446.03 -2.26 -22.39 16 11 C 0.14 5.19 2.60 45.09 0.12 5.31 16 12 H 0.06 2.49 7.58 -2.39 -0.02 2.47 16 13 C -0.10 -3.04 5.36 30.64 0.16 -2.88 16 14 C -0.13 -4.67 6.08 30.67 0.19 -4.48 16 15 C 0.17 8.27 5.30 86.36 0.46 8.72 16 16 N -0.61 -32.28 2.99 -699.10 -2.09 -34.37 16 17 C -0.27 -16.10 9.58 84.03 0.81 -15.29 16 18 H 0.05 3.11 7.88 -2.92 -0.02 3.09 16 19 C -0.04 -2.41 4.92 84.86 0.42 -1.99 16 20 N -0.93 -55.60 11.19 21.65 0.24 -55.36 16 21 Si 0.97 46.78 29.59 68.60 2.03 48.81 16 22 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 23 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 24 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 25 C 0.15 6.67 6.09 86.36 0.53 7.19 16 26 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.05 1.65 6.48 -2.39 -0.02 1.63 16 29 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 30 H 0.22 0.55 8.06 -2.91 -0.02 0.53 16 31 H 0.41 7.91 7.73 -92.70 -0.72 7.19 16 32 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.08 2.04 8.14 -2.38 -0.02 2.03 16 34 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 36 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 37 H 0.05 3.02 6.06 -2.39 -0.01 3.00 16 38 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 39 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.03 1.40 7.93 -2.39 -0.02 1.38 16 Total: -1.00 -77.93 325.49 1.77 -76.16 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -0.42 Total: 13.12 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 5.44 Total: 7.99 kcal Atomic # 7 Polarization: -116.19 SS G_CDS: -5.22 Total: -121.41 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.06 Total: -24.68 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -77.93 1.77 -76.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007237103.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.865 kcal (2) G-P(sol) polarization free energy of solvation -77.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds