Wall clock time and date at job start Mon Mar 30 2020 02:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39828 * 126.45554 * 2 1 4 4 C 1.35455 * 107.86632 * 179.97438 * 3 2 1 5 5 N 1.35537 * 108.86803 * 359.73028 * 4 3 2 6 6 H 0.96998 * 125.67864 * 180.30631 * 5 4 3 7 7 C 1.37650 * 108.64386 * 0.43641 * 5 4 3 8 8 C 1.46680 * 126.23204 * 179.82750 * 7 5 4 9 9 O 1.21698 * 119.99533 * 179.41922 * 8 7 5 10 10 N 1.34772 * 120.00110 * 359.69790 * 8 7 5 11 11 C 1.46500 * 119.99729 * 179.97438 * 10 8 7 12 12 H 1.08990 * 109.50118 * 34.93235 * 11 10 8 13 13 C 1.53041 * 109.49549 * 154.99866 * 11 10 8 14 14 C 1.53040 * 109.53871 * 181.31507 * 13 11 10 15 15 C 1.53192 * 109.31263 * 298.63541 * 14 13 11 16 16 N 1.46928 * 108.77755 * 54.63203 * 15 14 13 17 17 C 1.36933 * 120.62949 * 126.36726 * 16 15 14 18 18 H 1.07992 * 120.00016 * 207.68684 * 17 16 15 19 19 C 1.38820 * 119.99759 * 27.69680 * 17 16 15 20 20 N 1.31614 * 120.00471 * 17.35532 * 19 17 16 21 21 Si 1.86801 * 119.99679 * 197.35987 * 19 17 16 22 22 H 1.48498 * 109.47465 * 89.99386 * 21 19 17 23 23 H 1.48495 * 109.46914 * 209.99795 * 21 19 17 24 24 H 1.48501 * 109.46908 * 329.99472 * 21 19 17 25 25 C 1.46925 * 118.73663 * 306.39606 * 16 15 14 26 26 H 1.09000 * 109.47225 * 270.02507 * 1 2 3 27 27 H 1.09001 * 109.46882 * 30.02572 * 1 2 3 28 28 H 1.09001 * 109.46724 * 150.02593 * 1 2 3 29 29 H 1.07996 * 126.07044 * 0.02562 * 3 2 1 30 30 H 1.07996 * 125.56967 * 179.97438 * 4 3 2 31 31 H 0.96998 * 120.00146 * 359.97438 * 10 8 7 32 32 H 1.09000 * 109.46209 * 301.33634 * 13 11 10 33 33 H 1.09003 * 109.46257 * 61.30809 * 13 11 10 34 34 H 1.08998 * 109.50068 * 58.58607 * 14 13 11 35 35 H 1.09004 * 109.49963 * 178.68406 * 14 13 11 36 36 H 1.09004 * 109.58671 * 174.42351 * 15 14 13 37 37 H 1.09004 * 109.58395 * 294.84232 * 15 14 13 38 38 H 0.96992 * 120.00510 * 180.02562 * 20 19 17 39 39 H 1.09001 * 109.58225 * 293.81974 * 25 16 15 40 40 H 1.09001 * 109.58031 * 173.39601 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6929 0.0006 5 7 3.6284 -0.6625 0.0070 6 1 4.4191 -1.2244 0.0129 7 6 2.3263 -1.1089 0.0006 8 6 1.8899 -2.5093 0.0008 9 8 0.7027 -2.7766 0.0055 10 7 2.8037 -3.4999 0.0015 11 6 2.3678 -4.8985 0.0023 12 1 1.4555 -4.9956 -0.5861 13 6 3.4642 -5.7756 -0.6068 14 6 2.9966 -7.2325 -0.6366 15 6 2.7352 -7.7100 0.7953 16 7 1.7901 -6.7859 1.4370 17 6 0.6426 -7.2545 2.0191 18 1 -0.2285 -6.6194 2.0832 19 6 0.5993 -8.5456 2.5272 20 7 1.7179 -9.1970 2.7655 21 14 -1.0466 -9.3587 2.8723 22 1 -1.5033 -10.0860 1.6608 23 1 -0.8995 -10.3157 3.9982 24 1 -2.0457 -8.3206 3.2323 25 6 2.0993 -5.3496 1.4414 26 1 -0.3634 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5134 29 1 2.0136 2.1548 0.0004 30 1 4.4973 1.3252 0.0003 31 1 3.7500 -3.2868 0.0015 32 1 3.6745 -5.4409 -1.6226 33 1 4.3689 -5.6970 -0.0040 34 1 2.0782 -7.3081 -1.2186 35 1 3.7685 -7.8531 -1.0918 36 1 2.3083 -8.7128 0.7739 37 1 3.6714 -7.7211 1.3535 38 1 1.6876 -10.0993 3.1201 39 1 2.9837 -5.1682 2.0522 40 1 1.2528 -4.7950 1.8463 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007237105.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:48 Heat of formation + Delta-G solvation = 21.924078 kcal Electronic energy + Delta-G solvation = -21658.564596 eV Core-core repulsion = 18474.189705 eV Total energy + Delta-G solvation = -3184.374891 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.37693 -39.15807 -37.23615 -34.42686 -32.74935 -32.21902 -30.48486 -30.06027 -28.45780 -26.71885 -25.28579 -23.01453 -22.11687 -21.47707 -20.47334 -19.74037 -18.90566 -18.42051 -16.76419 -15.75035 -15.51164 -15.18355 -14.70737 -14.20871 -13.89516 -13.72791 -13.71687 -13.34499 -13.11089 -12.97175 -12.61929 -12.41457 -12.37940 -12.25212 -11.82605 -11.57979 -11.09082 -10.88880 -10.79905 -10.27521 -10.21881 -9.97519 -9.90483 -9.64936 -9.53772 -8.88463 -8.86636 -8.42004 -8.18299 -6.67413 -5.77390 -3.19575 1.48383 2.65903 2.99764 3.32830 3.41802 3.48198 3.51265 3.53258 4.53482 4.87018 4.92218 5.13216 5.22729 5.30849 5.37992 5.52002 5.60947 5.68482 5.71333 5.86695 5.93199 6.05873 6.11916 6.12126 6.21082 6.36508 6.50371 6.58937 6.62125 6.64790 6.70940 6.82744 6.90789 6.98884 7.26691 7.35142 7.63982 7.72354 7.84867 8.39773 8.47840 9.23184 9.85293 10.40755 11.31407 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025643 B = 0.004228 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.663113 B = 6621.642526 C = 7339.004191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.078 4.078 3 C -0.213 4.213 4 C 0.018 3.982 5 N -0.542 5.542 6 H 0.415 0.585 7 C -0.053 4.053 8 C 0.583 3.417 9 O -0.521 6.521 10 N -0.724 5.724 11 C 0.127 3.873 12 H 0.089 0.911 13 C -0.115 4.115 14 C -0.140 4.140 15 C 0.167 3.833 16 N -0.587 5.587 17 C -0.251 4.251 18 H 0.068 0.932 19 C 0.002 3.998 20 N -0.905 5.905 21 Si 0.903 3.097 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.278 1.278 25 C 0.143 3.857 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.141 0.859 30 H 0.169 0.831 31 H 0.387 0.613 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.018 0.982 38 H 0.253 0.747 39 H 0.016 0.984 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.351 16.822 -7.658 19.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 C -0.237 4.237 4 C -0.117 4.117 5 N -0.138 5.138 6 H 0.252 0.748 7 C -0.166 4.166 8 C 0.370 3.630 9 O -0.396 6.396 10 N -0.374 5.374 11 C 0.022 3.978 12 H 0.107 0.893 13 C -0.153 4.153 14 C -0.179 4.179 15 C 0.041 3.959 16 N -0.310 5.310 17 C -0.380 4.380 18 H 0.086 0.914 19 C -0.196 4.196 20 N -0.549 5.549 21 Si 0.733 3.267 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.203 1.203 25 C 0.015 3.985 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.100 0.900 29 H 0.159 0.841 30 H 0.186 0.814 31 H 0.219 0.781 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.036 0.964 38 H 0.063 0.937 39 H 0.034 0.966 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.578 16.286 -7.556 19.120 hybrid contribution 0.358 -0.499 0.245 0.661 sum 6.936 15.787 -7.311 18.729 Atomic orbital electron populations 1.20347 0.89314 1.02786 1.02316 1.19966 0.95953 0.90774 1.01969 1.20785 0.91882 0.98726 1.12346 1.21949 0.99466 0.83005 1.07293 1.41957 1.07236 1.07231 1.57348 0.74788 1.20431 0.83559 0.93922 1.18670 1.17053 0.86169 0.82849 0.76903 1.90844 1.15893 1.83041 1.49842 1.46054 1.08576 1.07154 1.75628 1.21773 0.98155 0.77292 1.00568 0.89341 1.21684 0.97634 0.96798 0.99177 1.22184 1.00125 0.93831 1.01796 1.20849 0.92421 0.95702 0.86894 1.44005 1.23267 0.99730 1.64014 1.19258 0.89148 0.97949 1.31666 0.91447 1.25019 0.96833 0.99134 0.98600 1.70036 1.24966 1.12630 1.47301 0.86260 0.83693 0.79264 0.77446 1.21388 1.21795 1.20312 1.21181 0.98433 0.87106 0.91793 0.91497 0.92250 0.90015 0.84144 0.81402 0.78112 0.93145 0.92366 0.92335 0.92701 0.89191 0.96357 0.93670 0.96637 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.17 9.83 36.01 0.35 -0.81 16 2 C -0.08 -1.04 6.21 -104.16 -0.65 -1.68 16 3 C -0.21 -2.22 10.76 -39.98 -0.43 -2.65 16 4 C 0.02 0.16 11.89 -16.91 -0.20 -0.04 16 5 N -0.54 -5.12 5.99 -9.39 -0.06 -5.17 16 6 H 0.42 2.66 8.19 -40.82 -0.33 2.33 16 7 C -0.05 -0.72 7.06 -81.98 -0.58 -1.30 16 8 C 0.58 9.53 7.75 -12.85 -0.10 9.43 16 9 O -0.52 -10.51 14.47 5.19 0.08 -10.44 16 10 N -0.72 -10.58 5.08 -55.00 -0.28 -10.86 16 11 C 0.13 2.30 2.60 -67.81 -0.18 2.12 16 12 H 0.09 1.83 7.58 -51.93 -0.39 1.44 16 13 C -0.11 -1.84 5.35 -26.69 -0.14 -1.98 16 14 C -0.14 -2.60 6.08 -26.61 -0.16 -2.76 16 15 C 0.17 3.95 5.31 -3.71 -0.02 3.93 16 16 N -0.59 -15.06 2.99 -172.32 -0.52 -15.57 16 17 C -0.25 -7.12 9.59 -15.06 -0.14 -7.26 16 18 H 0.07 1.93 7.89 -52.49 -0.41 1.52 16 19 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 20 N -0.90 -26.42 11.19 55.49 0.62 -25.80 16 21 Si 0.90 22.22 29.59 -169.99 -5.03 17.19 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.14 3.15 6.09 -3.71 -0.02 3.13 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 1.22 6.49 -51.93 -0.34 0.89 16 29 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 30 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 31 H 0.39 4.24 7.73 -40.82 -0.32 3.93 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 2.39 6.04 -51.93 -0.31 2.08 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 1.41 7.93 -51.93 -0.41 1.00 16 LS Contribution 325.46 15.07 4.90 4.90 Total: -1.00 -33.29 325.46 -8.52 -41.81 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -5.88 Total: 3.83 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -2.36 Total: 0.10 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: -0.23 Total: -57.40 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.44 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.29 -8.52 -41.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007237105.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.733 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds