Wall clock time and date at job start Mon Mar 30 2020 02:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39828 * 126.45554 * 2 1 4 4 C 1.35455 * 107.86632 * 179.97438 * 3 2 1 5 5 N 1.35537 * 108.86803 * 359.73028 * 4 3 2 6 6 H 0.96998 * 125.67864 * 180.30631 * 5 4 3 7 7 C 1.37650 * 108.64386 * 0.43641 * 5 4 3 8 8 C 1.46680 * 126.23204 * 179.82750 * 7 5 4 9 9 O 1.21698 * 119.99533 * 179.41922 * 8 7 5 10 10 N 1.34772 * 120.00110 * 359.69790 * 8 7 5 11 11 C 1.46500 * 119.99729 * 179.97438 * 10 8 7 12 12 H 1.08990 * 109.50118 * 34.93235 * 11 10 8 13 13 C 1.53041 * 109.49549 * 154.99866 * 11 10 8 14 14 C 1.53040 * 109.53871 * 181.31507 * 13 11 10 15 15 C 1.53192 * 109.31263 * 298.63541 * 14 13 11 16 16 N 1.46928 * 108.77755 * 54.63203 * 15 14 13 17 17 C 1.36933 * 120.62949 * 126.36726 * 16 15 14 18 18 H 1.07992 * 120.00016 * 207.68684 * 17 16 15 19 19 C 1.38820 * 119.99759 * 27.69680 * 17 16 15 20 20 N 1.31614 * 120.00471 * 17.35532 * 19 17 16 21 21 Si 1.86801 * 119.99679 * 197.35987 * 19 17 16 22 22 H 1.48498 * 109.47465 * 89.99386 * 21 19 17 23 23 H 1.48495 * 109.46914 * 209.99795 * 21 19 17 24 24 H 1.48501 * 109.46908 * 329.99472 * 21 19 17 25 25 C 1.46925 * 118.73663 * 306.39606 * 16 15 14 26 26 H 1.09000 * 109.47225 * 270.02507 * 1 2 3 27 27 H 1.09001 * 109.46882 * 30.02572 * 1 2 3 28 28 H 1.09001 * 109.46724 * 150.02593 * 1 2 3 29 29 H 1.07996 * 126.07044 * 0.02562 * 3 2 1 30 30 H 1.07996 * 125.56967 * 179.97438 * 4 3 2 31 31 H 0.96998 * 120.00146 * 359.97438 * 10 8 7 32 32 H 1.09000 * 109.46209 * 301.33634 * 13 11 10 33 33 H 1.09003 * 109.46257 * 61.30809 * 13 11 10 34 34 H 1.08998 * 109.50068 * 58.58607 * 14 13 11 35 35 H 1.09004 * 109.49963 * 178.68406 * 14 13 11 36 36 H 1.09004 * 109.58671 * 174.42351 * 15 14 13 37 37 H 1.09004 * 109.58395 * 294.84232 * 15 14 13 38 38 H 0.96992 * 120.00510 * 180.02562 * 20 19 17 39 39 H 1.09001 * 109.58225 * 293.81974 * 25 16 15 40 40 H 1.09001 * 109.58031 * 173.39601 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6929 0.0006 5 7 3.6284 -0.6625 0.0070 6 1 4.4191 -1.2244 0.0129 7 6 2.3263 -1.1089 0.0006 8 6 1.8899 -2.5093 0.0008 9 8 0.7027 -2.7766 0.0055 10 7 2.8037 -3.4999 0.0015 11 6 2.3678 -4.8985 0.0023 12 1 1.4555 -4.9956 -0.5861 13 6 3.4642 -5.7756 -0.6068 14 6 2.9966 -7.2325 -0.6366 15 6 2.7352 -7.7100 0.7953 16 7 1.7901 -6.7859 1.4370 17 6 0.6426 -7.2545 2.0191 18 1 -0.2285 -6.6194 2.0832 19 6 0.5993 -8.5456 2.5272 20 7 1.7179 -9.1970 2.7655 21 14 -1.0466 -9.3587 2.8723 22 1 -1.5033 -10.0860 1.6608 23 1 -0.8995 -10.3157 3.9982 24 1 -2.0457 -8.3206 3.2323 25 6 2.0993 -5.3496 1.4414 26 1 -0.3634 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5134 29 1 2.0136 2.1548 0.0004 30 1 4.4973 1.3252 0.0003 31 1 3.7500 -3.2868 0.0015 32 1 3.6745 -5.4409 -1.6226 33 1 4.3689 -5.6970 -0.0040 34 1 2.0782 -7.3081 -1.2186 35 1 3.7685 -7.8531 -1.0918 36 1 2.3083 -8.7128 0.7739 37 1 3.6714 -7.7211 1.3535 38 1 1.6876 -10.0993 3.1201 39 1 2.9837 -5.1682 2.0522 40 1 1.2528 -4.7950 1.8463 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007237105.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:47 Heat of formation + Delta-G solvation = -1.226334 kcal Electronic energy + Delta-G solvation = -21659.568474 eV Core-core repulsion = 18474.189705 eV Total energy + Delta-G solvation = -3185.378768 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.27375 -40.48545 -38.84413 -36.03853 -34.29810 -33.35716 -32.37433 -31.25394 -29.76219 -27.75935 -27.28260 -24.36537 -23.90450 -22.70268 -21.46788 -21.29377 -20.01462 -19.46274 -18.74256 -17.16966 -16.83582 -16.53584 -16.35513 -15.75345 -15.42068 -15.10741 -14.91845 -14.58923 -14.54000 -14.25231 -14.03447 -13.87255 -13.59634 -13.42356 -13.15181 -13.05175 -12.77282 -12.62404 -12.50195 -12.14349 -11.99398 -11.78771 -11.61931 -11.35324 -10.97084 -10.64426 -10.21929 -9.67337 -9.10554 -8.72405 -7.93138 -5.38760 0.48854 1.43331 1.44500 1.54134 1.86436 2.04380 2.28627 2.36824 2.49463 3.20881 3.67449 3.79688 3.97994 4.07148 4.20426 4.27929 4.28979 4.41773 4.44287 4.53085 4.77168 4.86755 4.88212 4.89677 4.97302 5.02191 5.08523 5.11754 5.18170 5.23120 5.41158 5.48568 5.52553 5.60419 5.73365 5.80196 5.99797 6.34135 6.52092 6.67368 7.10168 7.21019 7.79406 8.29180 9.12533 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025643 B = 0.004228 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.663113 B = 6621.642526 C = 7339.004191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.096 4.096 3 C -0.231 4.231 4 C 0.052 3.948 5 N -0.528 5.528 6 H 0.431 0.569 7 C -0.088 4.088 8 C 0.580 3.420 9 O -0.572 6.572 10 N -0.709 5.709 11 C 0.144 3.856 12 H 0.058 0.942 13 C -0.103 4.103 14 C -0.130 4.130 15 C 0.171 3.829 16 N -0.607 5.607 17 C -0.271 4.271 18 H 0.052 0.948 19 C -0.042 4.042 20 N -0.928 5.928 21 Si 0.966 3.034 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.276 1.276 25 C 0.146 3.854 26 H 0.060 0.940 27 H 0.082 0.918 28 H 0.052 0.948 29 H 0.161 0.839 30 H 0.218 0.782 31 H 0.409 0.591 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.047 0.953 35 H 0.086 0.914 36 H 0.055 0.945 37 H 0.006 0.994 38 H 0.253 0.747 39 H 0.020 0.980 40 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.722 18.796 -8.783 22.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 C -0.255 4.255 4 C -0.085 4.085 5 N -0.125 5.125 6 H 0.271 0.729 7 C -0.200 4.200 8 C 0.369 3.631 9 O -0.452 6.452 10 N -0.360 5.360 11 C 0.037 3.963 12 H 0.076 0.924 13 C -0.141 4.141 14 C -0.170 4.170 15 C 0.046 3.954 16 N -0.331 5.331 17 C -0.401 4.401 18 H 0.070 0.930 19 C -0.238 4.238 20 N -0.574 5.574 21 Si 0.793 3.207 22 H -0.208 1.208 23 H -0.214 1.214 24 H -0.201 1.201 25 C 0.019 3.981 26 H 0.078 0.922 27 H 0.101 0.899 28 H 0.071 0.929 29 H 0.179 0.821 30 H 0.234 0.766 31 H 0.245 0.755 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.105 0.895 36 H 0.074 0.926 37 H 0.024 0.976 38 H 0.062 0.938 39 H 0.038 0.962 40 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 9.016 18.274 -8.699 22.156 hybrid contribution -0.343 -0.986 0.635 1.222 sum 8.674 17.287 -8.064 20.955 Atomic orbital electron populations 1.20298 0.90153 1.02445 1.01788 1.20272 0.96084 0.92165 1.02014 1.21104 0.92289 0.98936 1.13147 1.22734 1.00374 0.82540 1.02806 1.41936 1.06263 1.08013 1.56299 0.72933 1.19963 0.85659 0.92166 1.22226 1.17517 0.85592 0.84246 0.75739 1.90818 1.18117 1.84020 1.52233 1.45739 1.09652 1.05429 1.75164 1.21267 0.98324 0.79575 0.97111 0.92365 1.21613 0.96920 0.94169 1.01436 1.22023 1.00854 0.96189 0.97884 1.20737 0.90864 0.94021 0.89784 1.44228 1.23025 1.01328 1.64514 1.19409 0.89989 0.98448 1.32244 0.93020 1.25706 1.00024 0.99388 0.98637 1.70158 1.26632 1.12688 1.47914 0.85302 0.79868 0.78147 0.77358 1.20751 1.21352 1.20094 1.21197 0.97118 0.85171 0.94626 0.92165 0.89921 0.92930 0.82092 0.76560 0.75528 0.89452 0.90436 0.93435 0.89513 0.92631 0.97594 0.93787 0.96199 0.95414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.39 9.83 71.24 0.70 -1.69 16 2 C -0.10 -2.47 6.21 -19.56 -0.12 -2.59 16 3 C -0.23 -4.10 10.76 22.01 0.24 -3.86 16 4 C 0.05 0.65 11.89 83.48 0.99 1.64 16 5 N -0.53 -8.18 5.99 -183.62 -1.10 -9.28 16 6 H 0.43 3.77 8.19 -92.71 -0.76 3.01 16 7 C -0.09 -2.28 7.06 40.35 0.28 -2.00 16 8 C 0.58 19.22 7.75 86.45 0.67 19.89 16 9 O -0.57 -24.58 14.47 -4.34 -0.06 -24.64 16 10 N -0.71 -20.08 5.08 -446.14 -2.26 -22.35 16 11 C 0.14 5.18 2.60 45.07 0.12 5.29 16 12 H 0.06 2.49 7.58 -2.39 -0.02 2.47 16 13 C -0.10 -3.05 5.35 30.62 0.16 -2.88 16 14 C -0.13 -4.67 6.08 30.67 0.19 -4.48 16 15 C 0.17 8.24 5.31 86.36 0.46 8.69 16 16 N -0.61 -32.25 2.99 -699.08 -2.09 -34.34 16 17 C -0.27 -16.04 9.59 84.04 0.81 -15.23 16 18 H 0.05 3.14 7.89 -2.91 -0.02 3.12 16 19 C -0.04 -2.41 4.91 84.86 0.42 -1.99 16 20 N -0.93 -55.60 11.19 21.65 0.24 -55.36 16 21 Si 0.97 46.83 29.59 68.60 2.03 48.86 16 22 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 24 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 25 C 0.15 6.66 6.09 86.36 0.53 7.18 16 26 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.05 1.69 6.49 -2.39 -0.02 1.68 16 29 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 30 H 0.22 0.55 8.06 -2.91 -0.02 0.53 16 31 H 0.41 7.89 7.73 -92.71 -0.72 7.18 16 32 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 34 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.06 3.04 6.04 -2.38 -0.01 3.03 16 37 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 38 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 39 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.03 1.40 7.93 -2.39 -0.02 1.38 16 Total: -1.00 -77.83 325.46 1.77 -76.06 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -0.42 Total: 13.07 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 5.44 Total: 7.98 kcal Atomic # 7 Polarization: -116.11 SS G_CDS: -5.22 Total: -121.32 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.06 Total: -24.64 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -77.83 1.77 -76.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007237105.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.831 kcal (2) G-P(sol) polarization free energy of solvation -77.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds