Wall clock time and date at job start Mon Mar 30 2020 02:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34490 * 126.83484 * 2 1 4 4 N 1.36450 * 108.85941 * 180.25490 * 3 2 1 5 5 H 0.96987 * 124.85111 * 179.73080 * 4 3 2 6 6 C 1.34662 * 110.29570 * 359.75488 * 4 3 2 7 7 C 1.36778 * 108.39744 * 359.97438 * 6 4 3 8 8 C 1.47257 * 126.94175 * 179.97438 * 7 6 4 9 9 O 1.21623 * 120.00025 * 180.02562 * 8 7 6 10 10 N 1.34778 * 120.00347 * 0.03019 * 8 7 6 11 11 C 1.46495 * 120.00523 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.52268 * 325.08325 * 11 10 8 13 13 C 1.53045 * 109.49987 * 205.00032 * 11 10 8 14 14 C 1.53034 * 109.53607 * 178.68499 * 13 11 10 15 15 C 1.53196 * 109.31636 * 61.36426 * 14 13 11 16 16 N 1.46929 * 108.77255 * 305.36157 * 15 14 13 17 17 C 1.36932 * 120.63237 * 233.58460 * 16 15 14 18 18 H 1.07990 * 120.00340 * 152.19317 * 17 16 15 19 19 C 1.38818 * 119.99695 * 332.19397 * 17 16 15 20 20 N 1.31620 * 120.00037 * 143.76745 * 19 17 16 21 21 Si 1.86799 * 119.99844 * 323.75740 * 19 17 16 22 22 H 1.48491 * 109.47487 * 270.00250 * 21 19 17 23 23 H 1.48506 * 109.46907 * 150.00273 * 21 19 17 24 24 H 1.48500 * 109.47391 * 30.00754 * 21 19 17 25 25 C 1.46922 * 118.73544 * 53.86436 * 16 15 14 26 26 H 1.09002 * 109.46782 * 270.14022 * 1 2 3 27 27 H 1.08994 * 109.47134 * 30.14326 * 1 2 3 28 28 H 1.09003 * 109.46953 * 150.14316 * 1 2 3 29 29 H 1.08000 * 125.56667 * 0.05066 * 3 2 1 30 30 H 1.07999 * 125.80305 * 179.97438 * 6 4 3 31 31 H 0.97008 * 119.99335 * 359.97438 * 10 8 7 32 32 H 1.08997 * 109.45712 * 58.65942 * 13 11 10 33 33 H 1.09005 * 109.45447 * 298.70426 * 13 11 10 34 34 H 1.09006 * 109.49989 * 301.40925 * 14 13 11 35 35 H 1.09000 * 109.49668 * 181.31400 * 14 13 11 36 36 H 1.08999 * 109.58420 * 185.57596 * 15 14 13 37 37 H 1.08994 * 109.70095 * 65.21863 * 15 14 13 38 38 H 0.97002 * 119.99508 * 354.92902 * 20 19 17 39 39 H 1.08998 * 109.58991 * 65.92020 * 25 16 15 40 40 H 1.09003 * 109.58582 * 186.34861 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6112 0.6553 -0.0057 5 1 4.3840 1.2413 -0.0107 6 6 3.6657 -0.6902 -0.0041 7 6 2.3864 -1.1741 0.0034 8 6 1.9750 -2.5880 0.0071 9 8 0.7938 -2.8776 0.0134 10 7 2.9074 -3.5612 0.0035 11 6 2.4982 -4.9678 0.0078 12 1 1.5907 -5.0814 0.6008 13 6 3.6141 -5.8227 0.6128 14 6 3.1744 -7.2881 0.6477 15 6 2.9146 -7.7735 -0.7819 16 7 1.9488 -6.8688 -1.4202 17 6 0.8078 -7.3601 -1.9963 18 1 -0.0763 -6.7429 -2.0554 19 6 0.7878 -8.6518 -2.5045 20 7 -0.3010 -9.3838 -2.3987 21 14 2.3059 -9.3509 -3.3387 22 1 2.2580 -9.0448 -4.7909 23 1 2.3441 -10.8227 -3.1440 24 1 3.5225 -8.7413 -2.7441 25 6 2.2334 -5.4274 -1.4341 26 1 -0.3633 0.0025 1.0277 27 1 -0.3633 0.8886 -0.5160 28 1 -0.3633 -0.8913 -0.5116 29 1 1.9868 2.1059 0.0008 30 1 4.5665 -1.2860 -0.0081 31 1 3.8495 -3.3302 -0.0018 32 1 3.8233 -5.4820 1.6268 33 1 4.5141 -5.7280 0.0051 34 1 2.2605 -7.3799 1.2348 35 1 3.9602 -7.8931 1.1001 36 1 2.5070 -8.7840 -0.7563 37 1 3.8470 -7.7697 -1.3463 38 1 -1.0639 -9.0491 -1.9018 39 1 3.1123 -5.2344 -2.0492 40 1 1.3762 -4.8895 -1.8390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009504980.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:23 Heat of formation + Delta-G solvation = 26.888645 kcal Electronic energy + Delta-G solvation = -21640.250048 eV Core-core repulsion = 18456.090437 eV Total energy + Delta-G solvation = -3184.159611 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.26457 -39.13258 -37.29019 -34.27575 -32.53632 -32.45718 -30.69253 -30.39293 -28.41304 -26.59827 -24.91674 -23.53597 -21.85475 -21.57232 -19.88604 -19.74257 -18.93569 -18.39342 -17.18449 -16.13978 -15.58180 -15.02078 -14.69660 -14.22088 -14.06306 -13.84039 -13.57213 -13.50057 -13.24848 -13.07475 -12.68414 -12.64400 -12.36749 -12.22706 -11.93662 -11.49018 -11.39966 -10.95197 -10.55799 -10.53812 -10.04805 -9.88222 -9.53930 -9.45805 -9.17149 -8.83739 -8.62591 -8.40365 -8.13676 -6.90147 -6.27520 -3.15226 1.74379 2.32289 3.03472 3.54519 3.56280 3.62783 3.76854 3.79075 4.68944 4.73067 4.90103 5.01354 5.10333 5.24634 5.35537 5.39206 5.50814 5.58311 5.64491 5.73164 5.88444 5.96223 6.05183 6.07484 6.16588 6.26215 6.36618 6.41547 6.56033 6.68717 6.72772 6.78545 6.79646 6.86238 6.95047 7.10198 7.26675 7.91773 8.19567 8.54790 8.68496 9.14088 9.74064 10.33446 11.12870 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027878 B = 0.004210 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.148271 B = 6649.842744 C = 7069.395817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.108 4.108 3 C -0.031 4.031 4 N -0.552 5.552 5 H 0.415 0.585 6 C 0.041 3.959 7 C -0.220 4.220 8 C 0.583 3.417 9 O -0.536 6.536 10 N -0.724 5.724 11 C 0.128 3.872 12 H 0.087 0.913 13 C -0.115 4.115 14 C -0.135 4.135 15 C 0.140 3.860 16 N -0.595 5.595 17 C -0.359 4.359 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.900 5.900 21 Si 1.015 2.985 22 H -0.299 1.299 23 H -0.294 1.294 24 H -0.270 1.270 25 C 0.141 3.859 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.167 0.833 30 H 0.170 0.830 31 H 0.390 0.610 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.030 0.970 38 H 0.267 0.733 39 H 0.018 0.982 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.534 19.817 7.254 24.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C -0.158 4.158 4 N -0.146 5.146 5 H 0.252 0.748 6 C -0.095 4.095 7 C -0.230 4.230 8 C 0.370 3.630 9 O -0.413 6.413 10 N -0.375 5.375 11 C 0.023 3.977 12 H 0.105 0.895 13 C -0.153 4.153 14 C -0.175 4.175 15 C 0.014 3.986 16 N -0.319 5.319 17 C -0.486 4.486 18 H 0.083 0.917 19 C -0.200 4.200 20 N -0.537 5.537 21 Si 0.844 3.156 22 H -0.227 1.227 23 H -0.221 1.221 24 H -0.196 1.196 25 C 0.014 3.986 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.100 0.900 29 H 0.184 0.816 30 H 0.188 0.812 31 H 0.223 0.777 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.036 0.964 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.269 18.369 6.433 23.007 hybrid contribution 0.427 1.769 0.706 1.952 sum 12.696 20.138 7.139 24.854 Atomic orbital electron populations 1.20207 0.89313 1.02724 1.01942 1.20602 0.95727 0.90396 1.04735 1.21550 0.82456 0.99136 1.12682 1.41446 1.08209 1.06645 1.58330 0.74845 1.21898 0.98545 0.83813 1.05230 1.20533 0.92599 0.93175 1.16734 1.17401 0.85663 0.83856 0.76034 1.90782 1.17147 1.83556 1.49830 1.45958 1.08826 1.06619 1.76084 1.21730 0.98138 0.77828 1.00024 0.89456 1.21666 0.97653 0.96320 0.99646 1.22072 1.00693 0.94351 1.00400 1.21419 0.92691 0.94521 0.89964 1.44296 1.23397 1.00212 1.64012 1.20091 0.89011 1.00465 1.39082 0.91721 1.26111 1.02642 0.93184 0.98099 1.70872 1.06471 1.35459 1.40880 0.84661 0.77676 0.75525 0.77707 1.22685 1.22098 1.19591 1.21340 0.98649 0.86394 0.92240 0.91882 0.92506 0.90046 0.81553 0.81245 0.77736 0.92734 0.92266 0.91795 0.92424 0.91522 0.95254 0.92275 0.96448 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 9.97 36.01 0.36 -0.71 16 2 C -0.11 -1.37 6.35 -102.54 -0.65 -2.02 16 3 C -0.03 -0.28 11.82 -16.82 -0.20 -0.48 16 4 N -0.55 -3.96 5.90 -12.84 -0.08 -4.04 16 5 H 0.42 1.40 8.96 -40.82 -0.37 1.03 16 6 C 0.04 0.38 11.40 -16.84 -0.19 0.18 16 7 C -0.22 -2.97 6.29 -103.35 -0.65 -3.62 16 8 C 0.58 9.87 7.78 -12.59 -0.10 9.77 16 9 O -0.54 -11.47 14.99 5.26 0.08 -11.39 16 10 N -0.72 -10.77 5.07 -54.60 -0.28 -11.04 16 11 C 0.13 2.33 2.62 -67.58 -0.18 2.15 16 12 H 0.09 1.88 7.58 -51.93 -0.39 1.48 16 13 C -0.11 -1.77 5.35 -26.69 -0.14 -1.92 16 14 C -0.14 -2.40 6.08 -26.61 -0.16 -2.57 16 15 C 0.14 3.07 4.37 -3.71 -0.02 3.06 16 16 N -0.60 -14.89 2.71 -172.06 -0.47 -15.35 16 17 C -0.36 -10.53 9.70 -15.06 -0.15 -10.67 16 18 H 0.07 2.08 8.06 -52.49 -0.42 1.65 16 19 C 0.00 0.10 4.81 -17.43 -0.08 0.02 16 20 N -0.90 -28.30 13.70 55.49 0.76 -27.54 16 21 Si 1.01 25.68 27.00 -169.99 -4.59 21.09 16 22 H -0.30 -7.59 7.11 56.52 0.40 -7.18 16 23 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 24 H -0.27 -6.21 4.73 56.52 0.27 -5.94 16 25 C 0.14 3.08 6.12 -3.49 -0.02 3.06 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.08 1.27 6.86 -51.93 -0.36 0.91 16 29 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 30 H 0.17 0.98 7.45 -52.49 -0.39 0.59 16 31 H 0.39 4.29 7.55 -40.82 -0.31 3.98 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.59 5.82 -51.93 -0.30 1.28 16 37 H 0.03 0.63 6.59 -51.93 -0.34 0.29 16 38 H 0.27 8.39 8.73 -40.82 -0.36 8.04 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 1.52 7.93 -51.93 -0.41 1.11 16 LS Contribution 321.57 15.07 4.85 4.85 Total: -1.00 -36.20 321.57 -7.87 -44.06 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -5.96 Total: 3.10 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -2.18 Total: -3.74 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -0.06 Total: -57.97 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.08 Total: -11.39 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -4.59 Total: 21.09 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -36.20 -7.87 -44.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009504980.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.953 kcal (2) G-P(sol) polarization free energy of solvation -36.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds