Wall clock time and date at job start Mon Mar 30 2020 02:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34490 * 126.83484 * 2 1 4 4 N 1.36450 * 108.85941 * 180.25490 * 3 2 1 5 5 H 0.96987 * 124.85111 * 179.73080 * 4 3 2 6 6 C 1.34662 * 110.29570 * 359.75488 * 4 3 2 7 7 C 1.36778 * 108.39744 * 359.97438 * 6 4 3 8 8 C 1.47257 * 126.94175 * 179.97438 * 7 6 4 9 9 O 1.21623 * 120.00025 * 180.02562 * 8 7 6 10 10 N 1.34778 * 120.00347 * 0.03019 * 8 7 6 11 11 C 1.46495 * 120.00523 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.52268 * 325.08325 * 11 10 8 13 13 C 1.53045 * 109.49987 * 205.00032 * 11 10 8 14 14 C 1.53034 * 109.53607 * 178.68499 * 13 11 10 15 15 C 1.53196 * 109.31636 * 61.36426 * 14 13 11 16 16 N 1.46929 * 108.77255 * 305.36157 * 15 14 13 17 17 C 1.36932 * 120.63237 * 233.58460 * 16 15 14 18 18 H 1.07990 * 120.00340 * 152.19317 * 17 16 15 19 19 C 1.38818 * 119.99695 * 332.19397 * 17 16 15 20 20 N 1.31620 * 120.00037 * 143.76745 * 19 17 16 21 21 Si 1.86799 * 119.99844 * 323.75740 * 19 17 16 22 22 H 1.48491 * 109.47487 * 270.00250 * 21 19 17 23 23 H 1.48506 * 109.46907 * 150.00273 * 21 19 17 24 24 H 1.48500 * 109.47391 * 30.00754 * 21 19 17 25 25 C 1.46922 * 118.73544 * 53.86436 * 16 15 14 26 26 H 1.09002 * 109.46782 * 270.14022 * 1 2 3 27 27 H 1.08994 * 109.47134 * 30.14326 * 1 2 3 28 28 H 1.09003 * 109.46953 * 150.14316 * 1 2 3 29 29 H 1.08000 * 125.56667 * 0.05066 * 3 2 1 30 30 H 1.07999 * 125.80305 * 179.97438 * 6 4 3 31 31 H 0.97008 * 119.99335 * 359.97438 * 10 8 7 32 32 H 1.08997 * 109.45712 * 58.65942 * 13 11 10 33 33 H 1.09005 * 109.45447 * 298.70426 * 13 11 10 34 34 H 1.09006 * 109.49989 * 301.40925 * 14 13 11 35 35 H 1.09000 * 109.49668 * 181.31400 * 14 13 11 36 36 H 1.08999 * 109.58420 * 185.57596 * 15 14 13 37 37 H 1.08994 * 109.70095 * 65.21863 * 15 14 13 38 38 H 0.97002 * 119.99508 * 354.92902 * 20 19 17 39 39 H 1.08998 * 109.58991 * 65.92020 * 25 16 15 40 40 H 1.09003 * 109.58582 * 186.34861 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6112 0.6553 -0.0057 5 1 4.3840 1.2413 -0.0107 6 6 3.6657 -0.6902 -0.0041 7 6 2.3864 -1.1741 0.0034 8 6 1.9750 -2.5880 0.0071 9 8 0.7938 -2.8776 0.0134 10 7 2.9074 -3.5612 0.0035 11 6 2.4982 -4.9678 0.0078 12 1 1.5907 -5.0814 0.6008 13 6 3.6141 -5.8227 0.6128 14 6 3.1744 -7.2881 0.6477 15 6 2.9146 -7.7735 -0.7819 16 7 1.9488 -6.8688 -1.4202 17 6 0.8078 -7.3601 -1.9963 18 1 -0.0763 -6.7429 -2.0554 19 6 0.7878 -8.6518 -2.5045 20 7 -0.3010 -9.3838 -2.3987 21 14 2.3059 -9.3509 -3.3387 22 1 2.2580 -9.0448 -4.7909 23 1 2.3441 -10.8227 -3.1440 24 1 3.5225 -8.7413 -2.7441 25 6 2.2334 -5.4274 -1.4341 26 1 -0.3633 0.0025 1.0277 27 1 -0.3633 0.8886 -0.5160 28 1 -0.3633 -0.8913 -0.5116 29 1 1.9868 2.1059 0.0008 30 1 4.5665 -1.2860 -0.0081 31 1 3.8495 -3.3302 -0.0018 32 1 3.8233 -5.4820 1.6268 33 1 4.5141 -5.7280 0.0051 34 1 2.2605 -7.3799 1.2348 35 1 3.9602 -7.8931 1.1001 36 1 2.5070 -8.7840 -0.7563 37 1 3.8470 -7.7697 -1.3463 38 1 -1.0639 -9.0491 -1.9018 39 1 3.1123 -5.2344 -2.0492 40 1 1.3762 -4.8895 -1.8390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009504980.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:23 Heat of formation + Delta-G solvation = -1.010231 kcal Electronic energy + Delta-G solvation = -21641.459834 eV Core-core repulsion = 18456.090437 eV Total energy + Delta-G solvation = -3185.369397 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.07225 -40.49692 -38.89130 -35.94749 -34.35921 -33.33245 -32.59183 -31.59421 -29.69895 -27.45867 -26.88354 -24.83304 -23.51407 -23.07920 -21.35142 -20.82467 -20.08295 -19.31003 -19.13374 -17.28273 -17.11397 -16.45144 -16.14222 -15.85616 -15.53443 -15.21928 -14.98034 -14.66432 -14.54379 -14.34824 -14.11210 -13.87521 -13.61195 -13.59744 -13.36084 -13.28232 -12.63766 -12.49680 -12.31943 -12.02095 -11.76126 -11.66559 -11.36537 -11.15797 -10.83616 -10.49627 -10.13543 -9.53619 -9.16379 -9.01525 -8.60853 -5.46509 0.82659 1.50899 1.51350 1.58597 1.78812 2.23051 2.49941 2.60036 2.62045 2.95906 3.51415 3.84840 4.01691 4.07279 4.09680 4.17025 4.32027 4.38322 4.44313 4.51690 4.71146 4.73164 4.79438 4.86454 4.92848 4.97013 5.04978 5.10495 5.14866 5.16583 5.24735 5.32977 5.46648 5.61859 5.81903 5.83256 5.97955 6.23330 6.71290 6.80340 6.91182 7.46677 7.60773 8.11467 8.73588 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027878 B = 0.004210 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.148271 B = 6649.842744 C = 7069.395817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.157 4.157 3 C -0.006 4.006 4 N -0.530 5.530 5 H 0.440 0.560 6 C 0.077 3.923 7 C -0.273 4.273 8 C 0.575 3.425 9 O -0.601 6.601 10 N -0.706 5.706 11 C 0.141 3.859 12 H 0.040 0.960 13 C -0.103 4.103 14 C -0.130 4.130 15 C 0.131 3.869 16 N -0.612 5.612 17 C -0.359 4.359 18 H 0.008 0.992 19 C -0.048 4.048 20 N -0.933 5.933 21 Si 1.073 2.927 22 H -0.298 1.298 23 H -0.293 1.293 24 H -0.226 1.226 25 C 0.144 3.856 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.036 0.964 29 H 0.202 0.798 30 H 0.212 0.788 31 H 0.415 0.585 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.037 0.963 35 H 0.101 0.899 36 H 0.043 0.957 37 H 0.055 0.945 38 H 0.249 0.751 39 H 0.044 0.956 40 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.417 21.879 7.908 29.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.163 4.163 3 C -0.135 4.135 4 N -0.126 5.126 5 H 0.281 0.719 6 C -0.062 4.062 7 C -0.283 4.283 8 C 0.366 3.634 9 O -0.483 6.483 10 N -0.358 5.358 11 C 0.034 3.966 12 H 0.059 0.941 13 C -0.141 4.141 14 C -0.170 4.170 15 C 0.007 3.993 16 N -0.337 5.337 17 C -0.488 4.488 18 H 0.026 0.974 19 C -0.245 4.245 20 N -0.573 5.573 21 Si 0.896 3.104 22 H -0.226 1.226 23 H -0.220 1.220 24 H -0.150 1.150 25 C 0.017 3.983 26 H 0.076 0.924 27 H 0.100 0.900 28 H 0.055 0.945 29 H 0.219 0.781 30 H 0.229 0.771 31 H 0.252 0.748 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.056 0.944 35 H 0.119 0.881 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 18.251 20.507 7.118 28.361 hybrid contribution -1.482 1.283 0.529 2.031 sum 16.769 21.790 7.648 28.540 Atomic orbital electron populations 1.20083 0.90680 1.01657 1.01314 1.20798 0.95718 0.91865 1.07920 1.21919 0.82471 0.99561 1.09512 1.41505 1.08606 1.06406 1.56066 0.71908 1.22338 0.97930 0.84686 1.01224 1.20389 0.95162 0.91225 1.21529 1.18096 0.84972 0.85718 0.74626 1.90755 1.19975 1.84675 1.52844 1.45642 1.09914 1.04794 1.75407 1.21282 0.98195 0.80368 0.96729 0.94145 1.21627 0.96919 0.93628 1.01877 1.21994 1.01147 0.96726 0.97114 1.21608 0.92151 0.92863 0.92681 1.44341 1.22870 1.01947 1.64589 1.19831 0.89160 1.00200 1.39635 0.97413 1.27473 1.05115 0.93811 0.98138 1.71010 1.07087 1.36358 1.42799 0.83937 0.75220 0.74980 0.76241 1.22553 1.21959 1.14984 1.21359 0.97527 0.84320 0.95072 0.92440 0.90048 0.94471 0.78079 0.77122 0.74787 0.89474 0.88874 0.94410 0.88105 0.93862 0.92727 0.94232 0.93808 0.96686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.17 9.97 71.24 0.71 -1.46 16 2 C -0.16 -3.90 6.35 -18.51 -0.12 -4.02 16 3 C -0.01 -0.09 11.82 83.12 0.98 0.89 16 4 N -0.53 -4.96 5.90 -194.54 -1.15 -6.11 16 5 H 0.44 0.26 8.96 -92.72 -0.83 -0.57 16 6 C 0.08 1.07 11.40 83.92 0.96 2.03 16 7 C -0.27 -7.13 6.29 -19.04 -0.12 -7.25 16 8 C 0.58 20.17 7.78 86.61 0.67 20.84 16 9 O -0.60 -28.38 14.99 -4.10 -0.06 -28.44 16 10 N -0.71 -20.14 5.07 -444.89 -2.26 -22.39 16 11 C 0.14 5.11 2.62 45.22 0.12 5.22 16 12 H 0.04 1.85 7.58 -2.39 -0.02 1.83 16 13 C -0.10 -2.76 5.35 30.62 0.16 -2.60 16 14 C -0.13 -4.25 6.08 30.67 0.19 -4.06 16 15 C 0.13 5.50 4.37 86.36 0.38 5.88 16 16 N -0.61 -31.24 2.71 -698.26 -1.89 -33.13 16 17 C -0.36 -22.42 9.70 84.04 0.82 -21.60 16 18 H 0.01 0.57 8.06 -2.92 -0.02 0.54 16 19 C -0.05 -2.95 4.81 84.86 0.41 -2.54 16 20 N -0.93 -61.85 13.70 21.65 0.30 -61.55 16 21 Si 1.07 52.13 27.00 68.60 1.85 53.99 16 22 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 23 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 24 H -0.23 -9.30 4.73 99.48 0.47 -8.83 16 25 C 0.14 6.43 6.12 86.51 0.53 6.96 16 26 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.04 1.31 6.86 -2.39 -0.02 1.29 16 29 H 0.20 1.43 8.06 -2.91 -0.02 1.41 16 30 H 0.21 1.06 7.45 -2.91 -0.02 1.04 16 31 H 0.41 7.46 7.55 -92.70 -0.70 6.76 16 32 H 0.09 1.88 8.14 -2.39 -0.02 1.87 16 33 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 34 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.10 2.49 8.14 -2.39 -0.02 2.48 16 36 H 0.04 2.01 5.82 -2.39 -0.01 1.99 16 37 H 0.06 2.05 6.59 -2.39 -0.02 2.03 16 38 H 0.25 16.88 8.73 -92.71 -0.81 16.07 16 39 H 0.04 1.73 8.14 -2.39 -0.02 1.72 16 40 H 0.01 0.77 7.93 -2.39 -0.02 0.75 16 Total: -1.00 -91.30 321.57 1.74 -89.56 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -0.74 Total: 9.79 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 5.69 Total: -1.72 kcal Atomic # 7 Polarization: -118.18 SS G_CDS: -5.00 Total: -123.18 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.06 Total: -28.44 kcal Atomic # 14 Polarization: 52.13 SS G_CDS: 1.85 Total: 53.99 kcal Total: -91.30 1.74 -89.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009504980.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.554 kcal (2) G-P(sol) polarization free energy of solvation -91.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds