Wall clock time and date at job start Mon Mar 30 2020 02:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34485 * 126.83285 * 2 1 4 4 N 1.36454 * 108.85637 * 179.97438 * 3 2 1 5 5 H 0.96993 * 124.85091 * 180.02562 * 4 3 2 6 6 C 1.34655 * 110.29573 * 359.72387 * 4 3 2 7 7 C 1.36766 * 108.39933 * 0.44396 * 6 4 3 8 8 C 1.47263 * 126.94573 * 179.83967 * 7 6 4 9 9 O 1.21627 * 120.00206 * 179.68617 * 8 7 6 10 10 N 1.34777 * 119.99670 * 359.68465 * 8 7 6 11 11 C 1.46501 * 119.99852 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.50071 * 35.06320 * 11 10 8 13 13 C 1.53035 * 109.49926 * 155.12761 * 11 10 8 14 14 C 1.53036 * 109.54208 * 181.28066 * 13 11 10 15 15 C 1.53187 * 109.34322 * 298.68633 * 14 13 11 16 16 N 1.46931 * 108.77328 * 54.61625 * 15 14 13 17 17 C 1.36936 * 120.63067 * 126.41445 * 16 15 14 18 18 H 1.08000 * 120.00367 * 207.67968 * 17 16 15 19 19 C 1.38813 * 120.00195 * 27.67060 * 17 16 15 20 20 N 1.31618 * 119.99784 * 17.36157 * 19 17 16 21 21 Si 1.86798 * 120.00239 * 197.35690 * 19 17 16 22 22 H 1.48497 * 109.46812 * 90.00677 * 21 19 17 23 23 H 1.48507 * 109.46940 * 210.00325 * 21 19 17 24 24 H 1.48497 * 109.47456 * 330.00241 * 21 19 17 25 25 C 1.46924 * 118.73945 * 306.39552 * 16 15 14 26 26 H 1.09003 * 109.47127 * 270.05249 * 1 2 3 27 27 H 1.08999 * 109.47075 * 30.05187 * 1 2 3 28 28 H 1.08995 * 109.46962 * 150.04925 * 1 2 3 29 29 H 1.07998 * 125.57540 * 359.93049 * 3 2 1 30 30 H 1.08004 * 125.80358 * 180.30919 * 6 4 3 31 31 H 0.96999 * 120.00425 * 359.97438 * 10 8 7 32 32 H 1.09004 * 109.43059 * 61.28009 * 13 11 10 33 33 H 1.09004 * 109.49059 * 301.32535 * 13 11 10 34 34 H 1.09003 * 109.50075 * 178.72001 * 14 13 11 35 35 H 1.09000 * 109.49507 * 58.65586 * 14 13 11 36 36 H 1.09001 * 109.58655 * 174.40285 * 15 14 13 37 37 H 1.09000 * 109.58941 * 294.69086 * 15 14 13 38 38 H 0.97006 * 120.00403 * 179.97438 * 20 19 17 39 39 H 1.08995 * 109.58607 * 173.39814 * 25 16 15 40 40 H 1.09010 * 109.58203 * 293.81790 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6553 0.0006 5 1 4.3840 1.2413 0.0011 6 6 3.6656 -0.6902 0.0070 7 6 2.3864 -1.1740 0.0008 8 6 1.9750 -2.5880 0.0012 9 8 0.7937 -2.8777 0.0009 10 7 2.9074 -3.5612 0.0019 11 6 2.4981 -4.9678 0.0017 12 1 1.5893 -5.0823 -0.5892 13 6 3.6124 -5.8240 -0.6042 14 6 3.1731 -7.2896 -0.6342 15 6 2.9161 -7.7717 0.7970 16 7 1.9515 -6.8654 1.4351 17 6 0.8117 -7.3555 2.0146 18 1 -0.0718 -6.7373 2.0758 19 6 0.7916 -8.6469 2.5232 20 7 1.9218 -9.2766 2.7650 21 14 -0.8394 -9.4911 2.8646 22 1 -1.2786 -10.2279 1.6524 23 1 -0.6769 -10.4445 3.9915 24 1 -1.8591 -8.4723 3.2213 25 6 2.2334 -5.4235 1.4401 26 1 -0.3633 0.0009 1.0277 27 1 -0.3633 0.8895 -0.5146 28 1 -0.3633 -0.8904 -0.5130 29 1 1.9868 2.1059 -0.0011 30 1 4.5664 -1.2860 0.0136 31 1 3.8495 -3.3302 0.0017 32 1 4.5138 -5.7275 0.0011 33 1 3.8194 -5.4861 -1.6197 34 1 3.9580 -7.8957 -1.0867 35 1 2.2583 -7.3833 -1.2194 36 1 2.5084 -8.7823 0.7745 37 1 3.8509 -7.7671 1.3575 38 1 1.9079 -10.1790 3.1207 39 1 1.3753 -4.8848 1.8420 40 1 3.1122 -5.2251 2.0538 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009504983.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:26 Heat of formation + Delta-G solvation = 22.535086 kcal Electronic energy + Delta-G solvation = -21576.456725 eV Core-core repulsion = 18392.108329 eV Total energy + Delta-G solvation = -3184.348396 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.21938 -39.03544 -37.08515 -34.16678 -32.44418 -32.36360 -30.41617 -30.17848 -28.08169 -26.56214 -25.20762 -23.32299 -22.02731 -21.43521 -19.79305 -19.61040 -18.77930 -18.31934 -16.66850 -16.05289 -15.33535 -14.91527 -14.61692 -14.17398 -14.02584 -13.74471 -13.50029 -13.26960 -13.10878 -12.90402 -12.63518 -12.36492 -12.31439 -12.21929 -11.72872 -11.36900 -11.01004 -10.80018 -10.73521 -10.18678 -10.14859 -9.83675 -9.81179 -9.53625 -9.33084 -8.76362 -8.57474 -8.36703 -8.28588 -6.59684 -5.71344 -3.12927 1.79560 2.36359 3.07895 3.45664 3.51630 3.54131 3.63870 3.84994 4.59128 4.73960 4.94479 5.07303 5.33497 5.39472 5.45939 5.56813 5.64084 5.71758 5.77248 5.82278 5.92361 6.10245 6.18584 6.25115 6.30257 6.33438 6.60968 6.68590 6.74222 6.80995 6.82477 6.83585 6.95484 7.13759 7.30961 7.42850 7.71218 7.90755 7.99957 8.52710 8.74903 9.29784 9.92310 10.48071 11.37411 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025434 B = 0.004175 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.643345 B = 6705.394929 C = 7432.768943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.109 4.109 3 C -0.031 4.031 4 N -0.552 5.552 5 H 0.415 0.585 6 C 0.041 3.959 7 C -0.219 4.219 8 C 0.583 3.417 9 O -0.538 6.538 10 N -0.723 5.723 11 C 0.128 3.872 12 H 0.085 0.915 13 C -0.114 4.114 14 C -0.140 4.140 15 C 0.167 3.833 16 N -0.588 5.588 17 C -0.248 4.248 18 H 0.067 0.933 19 C 0.001 3.999 20 N -0.905 5.905 21 Si 0.903 3.097 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.278 1.278 25 C 0.143 3.857 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.167 0.833 30 H 0.171 0.829 31 H 0.390 0.610 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.089 0.911 37 H 0.018 0.982 38 H 0.253 0.747 39 H 0.058 0.942 40 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.393 18.866 -7.677 21.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C -0.159 4.159 4 N -0.147 5.147 5 H 0.251 0.749 6 C -0.095 4.095 7 C -0.230 4.230 8 C 0.370 3.630 9 O -0.415 6.415 10 N -0.374 5.374 11 C 0.023 3.977 12 H 0.104 0.896 13 C -0.152 4.152 14 C -0.179 4.179 15 C 0.042 3.958 16 N -0.311 5.311 17 C -0.377 4.377 18 H 0.085 0.915 19 C -0.197 4.197 20 N -0.550 5.550 21 Si 0.733 3.267 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.204 1.204 25 C 0.015 3.985 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.099 0.901 29 H 0.184 0.816 30 H 0.188 0.812 31 H 0.222 0.778 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.036 0.964 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 6.613 18.571 -7.587 21.123 hybrid contribution 0.275 -0.072 0.248 0.378 sum 6.888 18.500 -7.338 21.060 Atomic orbital electron populations 1.20200 0.89340 1.02508 1.02081 1.20597 0.95709 0.90417 1.04787 1.21540 0.82480 0.99108 1.12753 1.41447 1.08190 1.06655 1.58374 0.74866 1.21908 0.98595 0.83793 1.05182 1.20546 0.92572 0.93227 1.16646 1.17392 0.85678 0.83832 0.76056 1.90769 1.17143 1.83582 1.50045 1.45980 1.08803 1.06714 1.75857 1.21677 0.98106 0.77698 1.00222 0.89645 1.21672 0.97643 0.96723 0.99205 1.22178 1.00092 0.93953 1.01720 1.20828 0.92099 0.95918 0.86980 1.44012 1.23194 0.99677 1.64224 1.19267 0.89047 0.97968 1.31458 0.91492 1.25010 0.96713 0.99233 0.98742 1.70044 1.24392 1.13184 1.47420 0.86269 0.83672 0.79384 0.77397 1.21443 1.21848 1.20350 1.21192 0.98507 0.86727 0.92059 0.91760 0.92619 0.90133 0.81600 0.81223 0.77761 0.92394 0.93172 0.92828 0.92425 0.89310 0.96400 0.93748 0.92339 0.96635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 9.98 36.01 0.36 -0.70 16 2 C -0.11 -1.39 6.35 -102.54 -0.65 -2.04 16 3 C -0.03 -0.29 11.82 -16.82 -0.20 -0.49 16 4 N -0.55 -4.11 5.90 -12.85 -0.08 -4.19 16 5 H 0.42 1.51 8.96 -40.82 -0.37 1.14 16 6 C 0.04 0.39 11.40 -16.85 -0.19 0.20 16 7 C -0.22 -3.02 6.29 -103.35 -0.65 -3.67 16 8 C 0.58 10.02 7.77 -12.59 -0.10 9.92 16 9 O -0.54 -11.51 14.98 5.25 0.08 -11.43 16 10 N -0.72 -11.16 5.07 -54.82 -0.28 -11.44 16 11 C 0.13 2.42 2.60 -67.82 -0.18 2.24 16 12 H 0.09 1.85 7.58 -51.93 -0.39 1.46 16 13 C -0.11 -1.90 5.36 -26.69 -0.14 -2.04 16 14 C -0.14 -2.67 6.08 -26.62 -0.16 -2.84 16 15 C 0.17 4.05 5.31 -3.71 -0.02 4.03 16 16 N -0.59 -15.42 3.00 -172.32 -0.52 -15.93 16 17 C -0.25 -7.16 9.59 -15.06 -0.14 -7.30 16 18 H 0.07 1.96 7.89 -52.49 -0.41 1.54 16 19 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 20 N -0.91 -26.80 11.19 55.49 0.62 -26.18 16 21 Si 0.90 22.53 29.59 -169.99 -5.03 17.50 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 C 0.14 3.25 6.09 -3.71 -0.02 3.23 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 1.22 6.85 -51.93 -0.36 0.87 16 29 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 30 H 0.17 1.06 7.45 -52.48 -0.39 0.67 16 31 H 0.39 4.58 7.54 -40.82 -0.31 4.27 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.09 2.40 6.04 -51.93 -0.31 2.09 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.06 1.44 7.93 -51.93 -0.41 1.03 16 40 H 0.02 0.35 8.14 -51.92 -0.42 -0.07 16 LS Contribution 326.35 15.07 4.92 4.92 Total: -1.00 -35.03 326.35 -8.36 -43.39 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.89 Total: 2.89 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -2.18 Total: 0.48 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: -0.25 Total: -57.74 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.08 Total: -11.43 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.03 Total: 17.50 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.03 -8.36 -43.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009504983.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.922 kcal (2) G-P(sol) polarization free energy of solvation -35.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds