Wall clock time and date at job start Mon Mar 30 2020 02:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34485 * 126.83285 * 2 1 4 4 N 1.36454 * 108.85637 * 179.97438 * 3 2 1 5 5 H 0.96993 * 124.85091 * 180.02562 * 4 3 2 6 6 C 1.34655 * 110.29573 * 359.72387 * 4 3 2 7 7 C 1.36766 * 108.39933 * 0.44396 * 6 4 3 8 8 C 1.47263 * 126.94573 * 179.83967 * 7 6 4 9 9 O 1.21627 * 120.00206 * 179.68617 * 8 7 6 10 10 N 1.34777 * 119.99670 * 359.68465 * 8 7 6 11 11 C 1.46501 * 119.99852 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.50071 * 35.06320 * 11 10 8 13 13 C 1.53035 * 109.49926 * 155.12761 * 11 10 8 14 14 C 1.53036 * 109.54208 * 181.28066 * 13 11 10 15 15 C 1.53187 * 109.34322 * 298.68633 * 14 13 11 16 16 N 1.46931 * 108.77328 * 54.61625 * 15 14 13 17 17 C 1.36936 * 120.63067 * 126.41445 * 16 15 14 18 18 H 1.08000 * 120.00367 * 207.67968 * 17 16 15 19 19 C 1.38813 * 120.00195 * 27.67060 * 17 16 15 20 20 N 1.31618 * 119.99784 * 17.36157 * 19 17 16 21 21 Si 1.86798 * 120.00239 * 197.35690 * 19 17 16 22 22 H 1.48497 * 109.46812 * 90.00677 * 21 19 17 23 23 H 1.48507 * 109.46940 * 210.00325 * 21 19 17 24 24 H 1.48497 * 109.47456 * 330.00241 * 21 19 17 25 25 C 1.46924 * 118.73945 * 306.39552 * 16 15 14 26 26 H 1.09003 * 109.47127 * 270.05249 * 1 2 3 27 27 H 1.08999 * 109.47075 * 30.05187 * 1 2 3 28 28 H 1.08995 * 109.46962 * 150.04925 * 1 2 3 29 29 H 1.07998 * 125.57540 * 359.93049 * 3 2 1 30 30 H 1.08004 * 125.80358 * 180.30919 * 6 4 3 31 31 H 0.96999 * 120.00425 * 359.97438 * 10 8 7 32 32 H 1.09004 * 109.43059 * 61.28009 * 13 11 10 33 33 H 1.09004 * 109.49059 * 301.32535 * 13 11 10 34 34 H 1.09003 * 109.50075 * 178.72001 * 14 13 11 35 35 H 1.09000 * 109.49507 * 58.65586 * 14 13 11 36 36 H 1.09001 * 109.58655 * 174.40285 * 15 14 13 37 37 H 1.09000 * 109.58941 * 294.69086 * 15 14 13 38 38 H 0.97006 * 120.00403 * 179.97438 * 20 19 17 39 39 H 1.08995 * 109.58607 * 173.39814 * 25 16 15 40 40 H 1.09010 * 109.58203 * 293.81790 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6553 0.0006 5 1 4.3840 1.2413 0.0011 6 6 3.6656 -0.6902 0.0070 7 6 2.3864 -1.1740 0.0008 8 6 1.9750 -2.5880 0.0012 9 8 0.7937 -2.8777 0.0009 10 7 2.9074 -3.5612 0.0019 11 6 2.4981 -4.9678 0.0017 12 1 1.5893 -5.0823 -0.5892 13 6 3.6124 -5.8240 -0.6042 14 6 3.1731 -7.2896 -0.6342 15 6 2.9161 -7.7717 0.7970 16 7 1.9515 -6.8654 1.4351 17 6 0.8117 -7.3555 2.0146 18 1 -0.0718 -6.7373 2.0758 19 6 0.7916 -8.6469 2.5232 20 7 1.9218 -9.2766 2.7650 21 14 -0.8394 -9.4911 2.8646 22 1 -1.2786 -10.2279 1.6524 23 1 -0.6769 -10.4445 3.9915 24 1 -1.8591 -8.4723 3.2213 25 6 2.2334 -5.4235 1.4401 26 1 -0.3633 0.0009 1.0277 27 1 -0.3633 0.8895 -0.5146 28 1 -0.3633 -0.8904 -0.5130 29 1 1.9868 2.1059 -0.0011 30 1 4.5664 -1.2860 0.0136 31 1 3.8495 -3.3302 0.0017 32 1 4.5138 -5.7275 0.0011 33 1 3.8194 -5.4861 -1.6197 34 1 3.9580 -7.8957 -1.0867 35 1 2.2583 -7.3833 -1.2194 36 1 2.5084 -8.7823 0.7745 37 1 3.8509 -7.7671 1.3575 38 1 1.9079 -10.1790 3.1207 39 1 1.3753 -4.8848 1.8420 40 1 3.1122 -5.2251 2.0538 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009504983.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:26 Heat of formation + Delta-G solvation = -2.623073 kcal Electronic energy + Delta-G solvation = -21577.547665 eV Core-core repulsion = 18392.108329 eV Total energy + Delta-G solvation = -3185.439335 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.04293 -40.43146 -38.74862 -35.87033 -34.14008 -33.29749 -32.33346 -31.41731 -29.48897 -27.42129 -27.25473 -24.62292 -23.85837 -22.87061 -21.19607 -20.75315 -19.97786 -19.10979 -18.70592 -17.21174 -17.06222 -16.47763 -16.13020 -15.69852 -15.36346 -15.05178 -14.87593 -14.54714 -14.48232 -14.25064 -13.97599 -13.94125 -13.57381 -13.36629 -13.24120 -13.02247 -12.75312 -12.54370 -12.28096 -12.10431 -11.96647 -11.73947 -11.55258 -11.29060 -10.77565 -10.60735 -10.08254 -9.49809 -9.13608 -8.68991 -7.90823 -5.36192 0.85688 1.43871 1.45200 1.53880 1.55021 2.26016 2.48252 2.56338 2.66080 3.22665 3.73371 3.89420 4.04571 4.13987 4.15135 4.27153 4.35233 4.48742 4.51222 4.60376 4.75173 4.83146 4.91322 4.93838 4.95840 5.03729 5.13577 5.16774 5.22734 5.29508 5.37597 5.50529 5.62905 5.64520 5.77390 5.86872 6.00736 6.36653 6.73760 6.83186 7.12774 7.49891 7.82564 8.32316 9.14686 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025434 B = 0.004175 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.643345 B = 6705.394929 C = 7432.768943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.155 4.155 3 C -0.007 4.007 4 N -0.531 5.531 5 H 0.439 0.561 6 C 0.073 3.927 7 C -0.271 4.271 8 C 0.576 3.424 9 O -0.596 6.596 10 N -0.707 5.707 11 C 0.144 3.856 12 H 0.051 0.949 13 C -0.102 4.102 14 C -0.130 4.130 15 C 0.172 3.828 16 N -0.608 5.608 17 C -0.270 4.270 18 H 0.050 0.950 19 C -0.042 4.042 20 N -0.928 5.928 21 Si 0.966 3.034 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.277 1.277 25 C 0.147 3.853 26 H 0.053 0.947 27 H 0.082 0.918 28 H 0.042 0.958 29 H 0.203 0.797 30 H 0.209 0.791 31 H 0.412 0.588 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.045 0.955 36 H 0.054 0.946 37 H 0.007 0.993 38 H 0.253 0.747 39 H 0.024 0.976 40 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.012 21.031 -8.772 24.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.161 4.161 3 C -0.136 4.136 4 N -0.127 5.127 5 H 0.280 0.720 6 C -0.065 4.065 7 C -0.281 4.281 8 C 0.367 3.633 9 O -0.478 6.478 10 N -0.359 5.359 11 C 0.038 3.962 12 H 0.069 0.931 13 C -0.140 4.140 14 C -0.170 4.170 15 C 0.047 3.953 16 N -0.332 5.332 17 C -0.400 4.400 18 H 0.068 0.932 19 C -0.238 4.238 20 N -0.574 5.574 21 Si 0.793 3.207 22 H -0.208 1.208 23 H -0.212 1.212 24 H -0.202 1.202 25 C 0.020 3.980 26 H 0.072 0.928 27 H 0.101 0.899 28 H 0.061 0.939 29 H 0.219 0.781 30 H 0.225 0.775 31 H 0.249 0.751 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.025 0.975 38 H 0.062 0.938 39 H 0.042 0.958 40 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 9.311 20.795 -8.698 24.388 hybrid contribution -0.500 -0.641 0.629 1.028 sum 8.811 20.154 -8.069 23.429 Atomic orbital electron populations 1.20089 0.90443 1.01925 1.01236 1.20806 0.95827 0.91691 1.07807 1.21935 0.82425 0.99614 1.09580 1.41506 1.08659 1.06352 1.56138 0.71996 1.22314 0.98014 0.84729 1.01488 1.20405 0.95075 0.91355 1.21303 1.18050 0.85003 0.85563 0.74672 1.90738 1.19648 1.84619 1.52775 1.45686 1.09894 1.04935 1.75386 1.21178 0.98206 0.80111 0.96749 0.93053 1.21600 0.96864 0.94087 1.01481 1.22024 1.00825 0.96303 0.97833 1.20723 0.90574 0.94206 0.89844 1.44240 1.22992 1.01219 1.64736 1.19403 0.89811 0.98567 1.32237 0.93230 1.25701 0.99940 0.99482 0.98681 1.70166 1.26067 1.13263 1.47904 0.85301 0.79815 0.78180 0.77370 1.20758 1.21249 1.20183 1.21204 0.97079 0.84875 0.94878 0.92839 0.89888 0.93911 0.78059 0.77473 0.75090 0.90326 0.89461 0.89517 0.93645 0.92718 0.97531 0.93800 0.95779 0.96086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.10 9.98 71.24 0.71 -1.39 16 2 C -0.16 -3.85 6.35 -18.51 -0.12 -3.97 16 3 C -0.01 -0.11 11.82 83.11 0.98 0.87 16 4 N -0.53 -5.39 5.90 -194.56 -1.15 -6.54 16 5 H 0.44 0.67 8.96 -92.71 -0.83 -0.16 16 6 C 0.07 1.10 11.40 83.91 0.96 2.06 16 7 C -0.27 -7.21 6.29 -19.04 -0.12 -7.33 16 8 C 0.58 20.33 7.77 86.62 0.67 21.00 16 9 O -0.60 -27.49 14.98 -4.12 -0.06 -27.55 16 10 N -0.71 -21.26 5.07 -445.59 -2.26 -23.52 16 11 C 0.14 5.46 2.60 45.07 0.12 5.58 16 12 H 0.05 2.32 7.58 -2.39 -0.02 2.30 16 13 C -0.10 -3.14 5.36 30.62 0.16 -2.98 16 14 C -0.13 -4.83 6.08 30.67 0.19 -4.64 16 15 C 0.17 8.45 5.31 86.36 0.46 8.91 16 16 N -0.61 -33.12 3.00 -699.10 -2.09 -35.22 16 17 C -0.27 -16.34 9.59 84.03 0.81 -15.53 16 18 H 0.05 3.09 7.89 -2.91 -0.02 3.07 16 19 C -0.04 -2.48 4.91 84.86 0.42 -2.07 16 20 N -0.93 -56.31 11.19 21.65 0.24 -56.07 16 21 Si 0.97 47.56 29.59 68.60 2.03 49.59 16 22 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 23 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 24 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 25 C 0.15 6.93 6.09 86.36 0.53 7.46 16 26 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.04 1.42 6.85 -2.39 -0.02 1.41 16 29 H 0.20 1.46 8.06 -2.91 -0.02 1.44 16 30 H 0.21 1.42 7.45 -2.91 -0.02 1.40 16 31 H 0.41 8.44 7.54 -92.71 -0.70 7.74 16 32 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.05 3.05 6.04 -2.39 -0.01 3.03 16 37 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.25 14.69 8.31 -92.70 -0.77 13.92 16 39 H 0.02 1.26 7.93 -2.39 -0.02 1.24 16 40 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -83.60 326.35 2.00 -81.61 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -0.47 Total: 9.74 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 5.76 Total: 7.97 kcal Atomic # 7 Polarization: -116.09 SS G_CDS: -5.26 Total: -121.35 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.06 Total: -27.55 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -83.60 2.00 -81.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009504983.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.983 kcal (2) G-P(sol) polarization free energy of solvation -83.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds