Wall clock time and date at job start Mon Mar 30 2020 01:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35452 * 125.56215 * 2 1 4 4 C 1.39837 * 107.86259 * 179.70586 * 3 2 1 5 5 C 1.37870 * 107.08373 * 0.41652 * 4 3 2 6 6 C 1.46680 * 126.23003 * 179.85021 * 5 4 3 7 7 O 1.21690 * 120.00034 * 184.89269 * 6 5 4 8 8 N 1.34777 * 120.00195 * 4.88261 * 6 5 4 9 9 C 1.46500 * 120.00294 * 174.46976 * 8 6 5 10 10 H 1.09000 * 110.88311 * 328.88885 * 9 8 6 11 11 C 1.55150 * 111.00795 * 205.00330 * 9 8 6 12 12 C 1.54318 * 102.94630 * 206.38642 * 11 9 8 13 13 N 1.47030 * 107.26689 * 22.19226 * 12 11 9 14 14 C 1.36940 * 125.64575 * 181.02207 * 13 12 11 15 15 H 1.07997 * 119.99906 * 185.68114 * 14 13 12 16 16 C 1.38813 * 120.00163 * 5.68291 * 14 13 12 17 17 N 1.31622 * 119.99886 * 6.82547 * 16 14 13 18 18 Si 1.86799 * 120.00091 * 186.82519 * 16 14 13 19 19 H 1.48499 * 109.47062 * 265.00777 * 18 16 14 20 20 H 1.48494 * 109.47050 * 25.01003 * 18 16 14 21 21 H 1.48494 * 109.47030 * 145.01033 * 18 16 14 22 22 C 1.47417 * 108.70457 * 1.29130 * 13 12 11 23 23 N 1.35529 * 125.56603 * 179.97438 * 2 1 3 24 24 C 1.46504 * 125.67766 * 0.02562 * 23 2 1 25 25 H 1.08999 * 109.47533 * 270.03915 * 1 2 3 26 26 H 1.09004 * 109.47202 * 30.04116 * 1 2 3 27 27 H 1.08997 * 109.47313 * 150.03934 * 1 2 3 28 28 H 1.08003 * 126.06971 * 359.94089 * 3 2 1 29 29 H 1.07997 * 126.45462 * 180.30493 * 4 3 2 30 30 H 0.97003 * 120.00087 * 354.47713 * 8 6 5 31 31 H 1.08999 * 110.71923 * 88.02132 * 11 9 8 32 32 H 1.08996 * 110.72437 * 324.75341 * 11 9 8 33 33 H 1.08998 * 109.88327 * 262.78275 * 12 11 9 34 34 H 1.08995 * 110.01312 * 141.68004 * 12 11 9 35 35 H 0.97006 * 120.00130 * 179.97438 * 17 16 14 36 36 H 1.08993 * 110.37042 * 94.47749 * 22 13 12 37 37 H 1.09002 * 110.36788 * 216.80840 * 22 13 12 38 38 H 1.08998 * 109.47250 * 271.77829 * 24 23 2 39 39 H 1.08999 * 109.46533 * 31.78016 * 24 23 2 40 40 H 1.08997 * 109.46948 * 151.77226 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6269 0.6767 0.0068 5 6 3.6121 -0.7019 0.0013 6 6 4.7860 -1.5814 0.0022 7 8 4.6436 -2.7862 -0.0930 8 7 6.0223 -1.0553 0.1083 9 6 7.1856 -1.9371 0.2313 10 1 6.9217 -2.8583 0.7508 11 6 8.3591 -1.2138 0.9432 12 6 9.6011 -1.9471 0.3945 13 7 9.2124 -2.5712 -0.8788 14 6 10.0251 -3.3333 -1.6750 15 1 9.6735 -3.6724 -2.6381 16 6 11.3010 -3.6699 -1.2441 17 7 11.6818 -3.3732 -0.0196 18 14 12.4776 -4.5442 -2.4020 19 1 12.3982 -6.0096 -2.1748 20 1 12.1062 -4.2403 -3.8073 21 1 13.8636 -4.0777 -2.1443 22 6 7.8047 -2.2353 -1.1596 23 7 2.2953 -1.1025 0.0005 24 6 1.8242 -2.4897 0.0006 25 1 -0.3634 0.0007 1.0276 26 1 -0.3634 0.8896 -0.5145 27 1 -0.3634 -0.8903 -0.5132 28 1 1.9544 2.1269 -0.0009 29 1 4.5023 1.3092 0.0132 30 1 6.1418 -0.0927 0.1034 31 1 8.2869 -1.3333 2.0242 32 1 8.3832 -0.1584 0.6717 33 1 9.9211 -2.7135 1.1004 34 1 10.4103 -1.2363 0.2271 35 1 12.5733 -3.6087 0.2817 36 1 7.7451 -1.3555 -1.8003 37 1 7.2988 -3.0805 -1.6262 38 1 1.6768 -2.8233 1.0277 39 1 0.8804 -2.5528 -0.5410 40 1 2.5649 -3.1249 -0.4851 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010170447.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:07 Heat of formation + Delta-G solvation = 37.029103 kcal Electronic energy + Delta-G solvation = -21274.079920 eV Core-core repulsion = 18090.360032 eV Total energy + Delta-G solvation = -3183.719888 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.51953 -39.14081 -37.10245 -34.19335 -32.92081 -32.09929 -31.54200 -29.18898 -27.68479 -26.58745 -26.17651 -24.34669 -22.15114 -20.63442 -20.32275 -19.86559 -19.16885 -17.69600 -16.75909 -16.10227 -15.79041 -15.22374 -14.61650 -14.45058 -14.32036 -13.89434 -13.54183 -13.41325 -13.25838 -13.00225 -12.78635 -12.42414 -12.27397 -12.13956 -12.00354 -11.94830 -11.80142 -11.02888 -10.83573 -10.75186 -10.31624 -10.08693 -9.91173 -9.77110 -9.64880 -8.83575 -8.77268 -8.59922 -8.10516 -6.80777 -5.68163 -3.04206 1.46387 2.57435 2.60747 3.42314 3.46893 3.49066 3.49602 3.52975 4.52919 4.60994 4.69777 4.81607 4.91907 5.08600 5.25674 5.30506 5.33694 5.39727 5.45958 5.49105 5.61500 5.62968 5.76325 5.80937 5.98324 6.06500 6.21036 6.34769 6.44379 6.61123 6.69044 6.74379 6.91729 7.01266 7.11514 7.46158 7.65780 7.73449 7.83697 8.27771 8.39758 9.22949 9.83653 10.48799 11.41592 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041877 B = 0.003355 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.464609 B = 8344.273402 C = 8634.917509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.034 3.966 3 C -0.207 4.207 4 C -0.141 4.141 5 C -0.046 4.046 6 C 0.586 3.414 7 O -0.550 6.550 8 N -0.703 5.703 9 C 0.131 3.869 10 H 0.097 0.903 11 C -0.148 4.148 12 C 0.173 3.827 13 N -0.603 5.603 14 C -0.226 4.226 15 H 0.078 0.922 16 C -0.009 4.009 17 N -0.921 5.921 18 Si 0.912 3.088 19 H -0.289 1.289 20 H -0.281 1.281 21 H -0.290 1.290 22 C 0.129 3.871 23 N -0.407 5.407 24 C 0.061 3.939 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.140 0.860 29 H 0.144 0.856 30 H 0.399 0.601 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.033 0.967 35 H 0.252 0.748 36 H 0.021 0.979 37 H 0.043 0.957 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.829 9.145 2.549 22.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.230 4.230 4 C -0.168 4.168 5 C -0.160 4.160 6 C 0.373 3.627 7 O -0.429 6.429 8 N -0.353 5.353 9 C 0.026 3.974 10 H 0.115 0.885 11 C -0.187 4.187 12 C 0.048 3.952 13 N -0.330 5.330 14 C -0.355 4.355 15 H 0.096 0.904 16 C -0.205 4.205 17 N -0.569 5.569 18 Si 0.743 3.257 19 H -0.216 1.216 20 H -0.206 1.206 21 H -0.216 1.216 22 C 0.002 3.998 23 N -0.081 5.081 24 C -0.080 4.080 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.158 0.842 29 H 0.162 0.838 30 H 0.234 0.766 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.039 0.961 37 H 0.062 0.938 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -20.788 7.785 2.511 22.339 hybrid contribution 0.740 0.078 -0.553 0.927 sum -20.047 7.863 1.958 21.623 Atomic orbital electron populations 1.20365 0.87926 1.03309 1.02737 1.20537 0.93712 0.85955 1.08056 1.20580 0.92489 0.97628 1.12347 1.21328 0.97855 0.91998 1.05574 1.20125 0.84345 0.93639 1.17851 1.16991 0.82383 0.86816 0.76513 1.90771 1.86227 1.14987 1.50959 1.45678 1.05422 1.10446 1.73752 1.22392 0.83089 0.93384 0.98565 0.88487 1.23160 0.96603 0.99336 0.99593 1.21226 0.90669 0.95239 0.88083 1.44400 1.06354 1.59062 1.23145 1.19071 0.94256 1.24497 0.97659 0.90427 1.24815 0.97972 1.01049 0.96671 1.69943 1.19174 1.52197 1.15577 0.86087 0.80494 0.79187 0.79942 1.21624 1.20641 1.21645 1.21884 0.86542 0.97882 0.93538 1.43751 1.04677 1.06572 1.53058 1.22304 1.01971 0.79955 1.03733 0.90855 0.89956 0.91710 0.84186 0.83833 0.76582 0.91485 0.92017 0.91642 0.94881 0.93766 0.96145 0.93820 0.90748 0.90211 0.87277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.56 10.08 36.00 0.36 -0.20 16 2 C 0.03 0.36 6.87 -81.95 -0.56 -0.21 16 3 C -0.21 -2.19 10.71 -39.98 -0.43 -2.62 16 4 C -0.14 -1.66 10.36 -39.12 -0.41 -2.07 16 5 C -0.05 -0.64 6.89 -81.98 -0.56 -1.21 16 6 C 0.59 9.58 7.77 -12.85 -0.10 9.48 16 7 O -0.55 -10.65 14.31 5.20 0.07 -10.57 16 8 N -0.70 -10.76 5.18 -52.92 -0.27 -11.04 16 9 C 0.13 2.44 3.40 -65.66 -0.22 2.21 16 10 H 0.10 2.00 7.62 -51.93 -0.40 1.60 16 11 C -0.15 -2.69 6.59 -24.90 -0.16 -2.85 16 12 C 0.17 4.18 5.44 -3.06 -0.02 4.17 16 13 N -0.60 -15.81 3.39 -169.94 -0.58 -16.39 16 14 C -0.23 -6.48 10.26 -15.06 -0.15 -6.64 16 15 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16 16 C -0.01 -0.26 5.45 -17.43 -0.10 -0.35 16 17 N -0.92 -27.27 10.44 55.49 0.58 -26.69 16 18 Si 0.91 22.45 29.56 -169.99 -5.02 17.42 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 C 0.13 2.85 6.94 -2.41 -0.02 2.83 16 23 N -0.41 -5.05 3.16 -115.62 -0.37 -5.41 16 24 C 0.06 0.64 10.46 59.85 0.63 1.26 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.37 7.03 -51.93 -0.37 0.01 16 28 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 29 H 0.14 1.36 7.45 -52.49 -0.39 0.97 16 30 H 0.40 4.96 7.47 -40.82 -0.30 4.66 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.06 0.99 8.00 -51.93 -0.42 0.57 16 33 H 0.07 1.76 6.90 -51.93 -0.36 1.41 16 34 H 0.03 0.86 7.95 -51.93 -0.41 0.45 16 35 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.59 7.03 -51.93 -0.36 0.23 16 40 H 0.11 1.39 6.12 -51.93 -0.32 1.07 16 LS Contribution 327.20 15.07 4.93 4.93 Total: -1.00 -33.61 327.20 -8.23 -41.84 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -5.83 Total: 2.09 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -1.74 Total: 3.81 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: -0.64 Total: -59.53 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.07 Total: -10.57 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.61 -8.23 -41.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010170447.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.872 kcal (2) G-P(sol) polarization free energy of solvation -33.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds