Wall clock time and date at job start Mon Mar 30 2020 01:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35452 * 125.56215 * 2 1 4 4 C 1.39837 * 107.86259 * 179.70586 * 3 2 1 5 5 C 1.37870 * 107.08373 * 0.41652 * 4 3 2 6 6 C 1.46680 * 126.23003 * 179.85021 * 5 4 3 7 7 O 1.21690 * 120.00034 * 184.89269 * 6 5 4 8 8 N 1.34777 * 120.00195 * 4.88261 * 6 5 4 9 9 C 1.46500 * 120.00294 * 174.46976 * 8 6 5 10 10 H 1.09000 * 110.88311 * 328.88885 * 9 8 6 11 11 C 1.55150 * 111.00795 * 205.00330 * 9 8 6 12 12 C 1.54318 * 102.94630 * 206.38642 * 11 9 8 13 13 N 1.47030 * 107.26689 * 22.19226 * 12 11 9 14 14 C 1.36940 * 125.64575 * 181.02207 * 13 12 11 15 15 H 1.07997 * 119.99906 * 185.68114 * 14 13 12 16 16 C 1.38813 * 120.00163 * 5.68291 * 14 13 12 17 17 N 1.31622 * 119.99886 * 6.82547 * 16 14 13 18 18 Si 1.86799 * 120.00091 * 186.82519 * 16 14 13 19 19 H 1.48499 * 109.47062 * 265.00777 * 18 16 14 20 20 H 1.48494 * 109.47050 * 25.01003 * 18 16 14 21 21 H 1.48494 * 109.47030 * 145.01033 * 18 16 14 22 22 C 1.47417 * 108.70457 * 1.29130 * 13 12 11 23 23 N 1.35529 * 125.56603 * 179.97438 * 2 1 3 24 24 C 1.46504 * 125.67766 * 0.02562 * 23 2 1 25 25 H 1.08999 * 109.47533 * 270.03915 * 1 2 3 26 26 H 1.09004 * 109.47202 * 30.04116 * 1 2 3 27 27 H 1.08997 * 109.47313 * 150.03934 * 1 2 3 28 28 H 1.08003 * 126.06971 * 359.94089 * 3 2 1 29 29 H 1.07997 * 126.45462 * 180.30493 * 4 3 2 30 30 H 0.97003 * 120.00087 * 354.47713 * 8 6 5 31 31 H 1.08999 * 110.71923 * 88.02132 * 11 9 8 32 32 H 1.08996 * 110.72437 * 324.75341 * 11 9 8 33 33 H 1.08998 * 109.88327 * 262.78275 * 12 11 9 34 34 H 1.08995 * 110.01312 * 141.68004 * 12 11 9 35 35 H 0.97006 * 120.00130 * 179.97438 * 17 16 14 36 36 H 1.08993 * 110.37042 * 94.47749 * 22 13 12 37 37 H 1.09002 * 110.36788 * 216.80840 * 22 13 12 38 38 H 1.08998 * 109.47250 * 271.77829 * 24 23 2 39 39 H 1.08999 * 109.46533 * 31.78016 * 24 23 2 40 40 H 1.08997 * 109.46948 * 151.77226 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6269 0.6767 0.0068 5 6 3.6121 -0.7019 0.0013 6 6 4.7860 -1.5814 0.0022 7 8 4.6436 -2.7862 -0.0930 8 7 6.0223 -1.0553 0.1083 9 6 7.1856 -1.9371 0.2313 10 1 6.9217 -2.8583 0.7508 11 6 8.3591 -1.2138 0.9432 12 6 9.6011 -1.9471 0.3945 13 7 9.2124 -2.5712 -0.8788 14 6 10.0251 -3.3333 -1.6750 15 1 9.6735 -3.6724 -2.6381 16 6 11.3010 -3.6699 -1.2441 17 7 11.6818 -3.3732 -0.0196 18 14 12.4776 -4.5442 -2.4020 19 1 12.3982 -6.0096 -2.1748 20 1 12.1062 -4.2403 -3.8073 21 1 13.8636 -4.0777 -2.1443 22 6 7.8047 -2.2353 -1.1596 23 7 2.2953 -1.1025 0.0005 24 6 1.8242 -2.4897 0.0006 25 1 -0.3634 0.0007 1.0276 26 1 -0.3634 0.8896 -0.5145 27 1 -0.3634 -0.8903 -0.5132 28 1 1.9544 2.1269 -0.0009 29 1 4.5023 1.3092 0.0132 30 1 6.1418 -0.0927 0.1034 31 1 8.2869 -1.3333 2.0242 32 1 8.3832 -0.1584 0.6717 33 1 9.9211 -2.7135 1.1004 34 1 10.4103 -1.2363 0.2271 35 1 12.5733 -3.6087 0.2817 36 1 7.7451 -1.3555 -1.8003 37 1 7.2988 -3.0805 -1.6262 38 1 1.6768 -2.8233 1.0277 39 1 0.8804 -2.5528 -0.5410 40 1 2.5649 -3.1249 -0.4851 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001010170447.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:07 Heat of formation + Delta-G solvation = 14.755489 kcal Electronic energy + Delta-G solvation = -21275.045776 eV Core-core repulsion = 18090.360032 eV Total energy + Delta-G solvation = -3184.685745 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.41795 -40.49256 -38.77828 -35.74286 -34.14416 -33.47337 -32.53667 -31.02473 -29.18485 -27.48964 -27.37656 -26.19835 -23.27781 -22.10026 -21.97270 -21.19916 -20.11430 -19.10935 -18.45954 -17.49475 -16.74300 -16.72091 -16.28698 -15.99006 -15.51761 -15.38922 -14.57658 -14.47238 -14.20223 -14.14828 -13.97981 -13.86870 -13.76780 -13.53168 -12.99663 -12.92127 -12.84208 -12.76148 -12.58360 -12.42616 -12.11015 -12.04256 -11.83546 -11.62588 -11.04067 -10.75091 -10.19251 -9.68453 -9.00118 -8.91529 -7.85998 -5.25327 0.46408 1.44972 1.46779 1.56259 1.63654 1.77439 2.33500 2.37143 2.50960 3.30059 3.64433 3.66847 3.91831 3.94708 3.97388 4.02510 4.18481 4.28438 4.32494 4.53421 4.57216 4.64393 4.71504 4.77978 4.83127 4.85538 4.96431 5.03983 5.12591 5.20636 5.27043 5.38734 5.49790 5.58240 5.75229 5.90414 6.03587 6.18804 6.32746 6.55470 7.07001 7.18097 7.72673 8.36510 9.21790 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041877 B = 0.003355 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.464609 B = 8344.273402 C = 8634.917509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.043 3.957 3 C -0.220 4.220 4 C -0.129 4.129 5 C -0.090 4.090 6 C 0.583 3.417 7 O -0.590 6.590 8 N -0.691 5.691 9 C 0.150 3.850 10 H 0.075 0.925 11 C -0.126 4.126 12 C 0.177 3.823 13 N -0.625 5.625 14 C -0.249 4.249 15 H 0.076 0.924 16 C -0.062 4.062 17 N -0.946 5.946 18 Si 0.980 3.020 19 H -0.287 1.287 20 H -0.270 1.270 21 H -0.289 1.289 22 C 0.129 3.871 23 N -0.419 5.419 24 C 0.061 3.939 25 H 0.086 0.914 26 H 0.101 0.899 27 H 0.074 0.926 28 H 0.167 0.833 29 H 0.164 0.836 30 H 0.417 0.583 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.030 0.970 34 H 0.008 0.992 35 H 0.249 0.751 36 H 0.033 0.967 37 H 0.023 0.977 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.904 11.111 2.405 25.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.074 4.074 3 C -0.243 4.243 4 C -0.156 4.156 5 C -0.202 4.202 6 C 0.374 3.626 7 O -0.473 6.473 8 N -0.342 5.342 9 C 0.044 3.956 10 H 0.093 0.907 11 C -0.165 4.165 12 C 0.052 3.948 13 N -0.351 5.351 14 C -0.378 4.378 15 H 0.094 0.906 16 C -0.256 4.256 17 N -0.595 5.595 18 Si 0.808 3.192 19 H -0.214 1.214 20 H -0.195 1.195 21 H -0.215 1.215 22 C 0.002 3.998 23 N -0.093 5.093 24 C -0.080 4.080 25 H 0.105 0.895 26 H 0.119 0.881 27 H 0.092 0.908 28 H 0.184 0.816 29 H 0.182 0.818 30 H 0.255 0.745 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.048 0.952 34 H 0.026 0.974 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.041 0.959 38 H 0.098 0.902 39 H 0.129 0.871 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -22.889 9.793 2.364 25.008 hybrid contribution 1.256 -0.495 -0.526 1.449 sum -21.632 9.298 1.837 23.618 Atomic orbital electron populations 1.20536 0.85037 1.04746 1.04020 1.21297 0.95524 0.85276 1.05324 1.20991 0.91925 0.99003 1.12374 1.21710 0.99411 0.91166 1.03318 1.19898 0.84279 0.94097 1.21952 1.17403 0.83172 0.86660 0.75415 1.90753 1.86803 1.16872 1.52862 1.45381 1.04251 1.10826 1.73702 1.21866 0.84289 0.93455 0.95992 0.90708 1.22981 0.92824 1.00100 1.00556 1.21038 0.92859 0.94037 0.86860 1.44684 1.07871 1.59019 1.23573 1.19415 0.95167 1.24996 0.98199 0.90580 1.25670 0.99488 1.02108 0.98299 1.70156 1.19211 1.53088 1.17037 0.85044 0.77979 0.77804 0.78378 1.21355 1.19495 1.21485 1.21976 0.84766 0.97371 0.95702 1.43991 1.04476 1.07537 1.53262 1.22331 1.02330 0.79082 1.04264 0.89505 0.88077 0.90751 0.81595 0.81825 0.74549 0.89170 0.88824 0.95187 0.97388 0.94152 0.94894 0.95868 0.90168 0.87102 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.80 10.08 71.24 0.72 -0.08 16 2 C 0.04 0.78 6.87 41.34 0.28 1.06 16 3 C -0.22 -3.93 10.71 22.01 0.24 -3.69 16 4 C -0.13 -2.72 10.36 22.57 0.23 -2.49 16 5 C -0.09 -2.42 6.89 40.35 0.28 -2.14 16 6 C 0.58 19.09 7.77 86.45 0.67 19.76 16 7 O -0.59 -23.70 14.31 -4.32 -0.06 -23.76 16 8 N -0.69 -20.47 5.18 -439.55 -2.28 -22.75 16 9 C 0.15 5.60 3.40 46.46 0.16 5.76 16 10 H 0.07 3.16 7.62 -2.39 -0.02 3.14 16 11 C -0.13 -4.44 6.59 31.78 0.21 -4.23 16 12 C 0.18 8.78 5.44 86.73 0.47 9.25 16 13 N -0.62 -33.67 3.39 -691.56 -2.35 -36.01 16 14 C -0.25 -14.62 10.26 84.03 0.86 -13.76 16 15 H 0.08 4.35 7.84 -2.91 -0.02 4.33 16 16 C -0.06 -3.64 5.45 84.86 0.46 -3.17 16 17 N -0.95 -57.61 10.44 21.65 0.23 -57.38 16 18 Si 0.98 46.87 29.56 68.60 2.03 48.90 16 19 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 22 C 0.13 5.77 6.94 86.94 0.60 6.38 16 23 N -0.42 -9.77 3.16 -519.72 -1.64 -11.42 16 24 C 0.06 1.22 10.46 127.77 1.34 2.56 16 25 H 0.09 0.63 8.14 -2.39 -0.02 0.62 16 26 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 27 H 0.07 0.57 7.03 -2.39 -0.02 0.56 16 28 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 29 H 0.16 2.57 7.45 -2.91 -0.02 2.55 16 30 H 0.42 9.39 7.47 -92.71 -0.69 8.69 16 31 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.09 2.74 8.00 -2.39 -0.02 2.72 16 33 H 0.03 1.68 6.90 -2.39 -0.02 1.67 16 34 H 0.01 0.43 7.95 -2.39 -0.02 0.41 16 35 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 36 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.02 1.11 8.14 -2.39 -0.02 1.10 16 38 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.11 1.43 7.03 -2.39 -0.02 1.42 16 40 H 0.08 2.11 6.12 -2.39 -0.01 2.10 16 Total: -1.00 -76.01 327.20 2.80 -73.21 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.35 Total: 14.00 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 6.52 Total: 15.21 kcal Atomic # 7 Polarization: -121.52 SS G_CDS: -6.04 Total: -127.56 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.06 Total: -23.76 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -76.01 2.80 -73.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010170447.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.968 kcal (2) G-P(sol) polarization free energy of solvation -76.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds