Wall clock time and date at job start Mon Mar 30 2020 01:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35456 * 125.56636 * 2 1 4 4 C 1.39828 * 107.86262 * 179.70855 * 3 2 1 5 5 C 1.37867 * 107.09178 * 0.41828 * 4 3 2 6 6 C 1.46681 * 126.23745 * 179.85000 * 5 4 3 7 7 O 1.21697 * 119.99782 * 184.85543 * 6 5 4 8 8 N 1.34768 * 119.99907 * 4.85135 * 6 5 4 9 9 C 1.46506 * 120.00139 * 174.46133 * 8 6 5 10 10 H 1.08996 * 110.77447 * 36.78518 * 9 8 6 11 11 C 1.55147 * 110.71984 * 160.02340 * 9 8 6 12 12 C 1.55131 * 101.48500 * 82.69817 * 11 9 8 13 13 N 1.47428 * 104.72402 * 37.29462 * 12 11 9 14 14 C 1.36928 * 125.64755 * 155.81731 * 13 12 11 15 15 H 1.08003 * 119.99827 * 179.68918 * 14 13 12 16 16 C 1.38813 * 120.00593 * 359.68919 * 14 13 12 17 17 N 1.31618 * 119.99658 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00193 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46972 * 60.00622 * 18 16 14 20 20 H 1.48500 * 109.46977 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47059 * 299.99991 * 18 16 14 22 22 C 1.47020 * 108.69899 * 335.55362 * 13 12 11 23 23 N 1.35530 * 125.56414 * 179.97438 * 2 1 3 24 24 C 1.46509 * 125.67614 * 0.05167 * 23 2 1 25 25 H 1.08999 * 109.46944 * 270.04355 * 1 2 3 26 26 H 1.09008 * 109.46844 * 30.03998 * 1 2 3 27 27 H 1.08998 * 109.47407 * 150.03622 * 1 2 3 28 28 H 1.07997 * 126.06621 * 359.94703 * 3 2 1 29 29 H 1.08007 * 126.45813 * 180.30631 * 4 3 2 30 30 H 0.96999 * 120.00416 * 354.46325 * 8 6 5 31 31 H 1.09000 * 111.00514 * 200.93457 * 11 9 8 32 32 H 1.09000 * 111.00929 * 324.75157 * 11 9 8 33 33 H 1.08993 * 110.49668 * 278.44845 * 12 11 9 34 34 H 1.09004 * 110.34286 * 156.05986 * 12 11 9 35 35 H 0.96996 * 119.99982 * 179.97438 * 17 16 14 36 36 H 1.09002 * 109.88186 * 120.70650 * 22 13 12 37 37 H 1.08997 * 109.88335 * 241.87187 * 22 13 12 38 38 H 1.08997 * 109.46886 * 270.91620 * 24 23 2 39 39 H 1.08993 * 109.46986 * 30.92138 * 24 23 2 40 40 H 1.08995 * 109.46711 * 150.92317 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2949 1.1019 0.0000 4 6 3.6269 0.6767 0.0068 5 6 3.6122 -0.7019 0.0012 6 6 4.7860 -1.5816 0.0020 7 8 4.6435 -2.7865 -0.0926 8 7 6.0223 -1.0554 0.1075 9 6 7.1857 -1.9373 0.2305 10 1 7.0587 -2.8321 -0.3787 11 6 8.4866 -1.1875 -0.1598 12 6 8.8216 -0.4428 1.1592 13 7 8.4504 -1.3882 2.2279 14 6 8.9643 -1.3997 3.4970 15 1 8.6218 -2.1335 4.2116 16 6 9.9254 -0.4683 3.8653 17 7 10.3424 0.4263 2.9946 18 14 10.6258 -0.4836 5.5970 19 1 11.2773 -1.7927 5.8558 20 1 11.6272 0.6041 5.7355 21 1 9.5293 -0.2740 6.5762 22 6 7.4327 -2.3125 1.7070 23 7 2.2953 -1.1025 0.0005 24 6 1.8241 -2.4897 0.0000 25 1 -0.3633 0.0008 1.0277 26 1 -0.3633 0.8897 -0.5145 27 1 -0.3634 -0.8903 -0.5133 28 1 1.9546 2.1268 -0.0008 29 1 4.5025 1.3090 0.0132 30 1 6.1419 -0.0929 0.1019 31 1 9.2766 -1.8891 -0.4277 32 1 8.3027 -0.4816 -0.9698 33 1 8.2343 0.4717 1.2409 34 1 9.8867 -0.2160 1.2063 35 1 11.0137 1.0774 3.2520 36 1 7.7950 -3.3384 1.7732 37 1 6.5091 -2.2058 2.2760 38 1 1.6909 -2.8285 1.0274 39 1 0.8729 -2.5502 -0.5287 40 1 2.5580 -3.1225 -0.4989 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010170449.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:10 Heat of formation + Delta-G solvation = 38.763906 kcal Electronic energy + Delta-G solvation = -21584.030076 eV Core-core repulsion = 18400.385415 eV Total energy + Delta-G solvation = -3183.644661 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.42380 -39.15579 -37.07876 -33.99672 -32.85173 -32.02810 -31.41716 -29.19245 -27.62409 -26.51310 -26.23908 -24.41251 -22.17488 -20.56457 -20.19411 -19.66068 -19.12415 -17.61995 -16.78145 -16.03659 -15.75137 -15.15526 -14.67925 -14.45526 -14.14462 -13.76673 -13.44628 -13.33829 -13.25404 -13.03943 -12.84203 -12.53949 -12.11086 -11.96349 -11.93842 -11.86753 -11.59469 -11.05617 -10.85773 -10.74550 -10.38953 -10.13853 -9.88116 -9.69167 -9.55264 -8.75720 -8.72579 -8.61258 -8.00354 -6.82686 -5.64672 -3.05781 1.55633 2.65168 2.71911 3.42019 3.45986 3.47341 3.54728 3.66609 4.50643 4.69029 4.75138 4.90233 5.00087 5.15411 5.33466 5.34714 5.43386 5.46096 5.49967 5.51589 5.55856 5.67943 5.76601 5.88413 6.10110 6.17681 6.28650 6.37516 6.50390 6.56595 6.71855 6.81427 7.01300 7.08198 7.21017 7.44841 7.62869 7.80728 7.86665 8.35863 8.46998 9.23194 9.83757 10.48338 11.39376 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024755 B = 0.004034 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.822131 B = 6939.042958 C = 7235.694408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.033 3.967 3 C -0.206 4.206 4 C -0.138 4.138 5 C -0.047 4.047 6 C 0.589 3.411 7 O -0.559 6.559 8 N -0.697 5.697 9 C 0.133 3.867 10 H 0.089 0.911 11 C -0.153 4.153 12 C 0.151 3.849 13 N -0.603 5.603 14 C -0.221 4.221 15 H 0.076 0.924 16 C -0.011 4.011 17 N -0.924 5.924 18 Si 0.915 3.085 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.286 1.286 22 C 0.128 3.872 23 N -0.408 5.408 24 C 0.063 3.937 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.140 0.860 29 H 0.145 0.855 30 H 0.403 0.597 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.011 0.989 34 H 0.110 0.890 35 H 0.252 0.748 36 H 0.032 0.968 37 H 0.024 0.976 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.616 -0.057 -9.186 18.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.230 4.230 4 C -0.164 4.164 5 C -0.160 4.160 6 C 0.377 3.623 7 O -0.440 6.440 8 N -0.346 5.346 9 C 0.028 3.972 10 H 0.107 0.893 11 C -0.192 4.192 12 C 0.026 3.974 13 N -0.329 5.329 14 C -0.349 4.349 15 H 0.094 0.906 16 C -0.206 4.206 17 N -0.573 5.573 18 Si 0.746 3.254 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.213 1.213 22 C 0.001 3.999 23 N -0.082 5.082 24 C -0.078 4.078 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.082 0.918 28 H 0.158 0.842 29 H 0.162 0.838 30 H 0.238 0.762 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.029 0.971 34 H 0.127 0.873 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.042 0.958 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.631 -1.202 -9.095 18.994 hybrid contribution 0.320 0.539 1.042 1.216 sum -16.311 -0.663 -8.053 18.203 Atomic orbital electron populations 1.20358 0.87960 1.03180 1.02755 1.20520 0.93659 0.85965 1.08178 1.20584 0.92490 0.97643 1.12281 1.21371 0.97933 0.92078 1.05003 1.20098 0.84292 0.93659 1.17984 1.16942 0.82394 0.86716 0.76279 1.90727 1.86312 1.14964 1.51992 1.45638 1.05168 1.10802 1.73020 1.22015 0.84361 0.93182 0.97600 0.89267 1.23380 0.95267 1.00060 1.00500 1.22020 1.03371 0.89710 0.82320 1.44502 1.44353 1.34036 1.10045 1.19044 1.16497 1.12585 0.86816 0.90613 1.24760 0.99659 0.97868 0.98337 1.69758 1.34066 1.20495 1.32951 0.86142 0.78535 0.77075 0.83695 1.21168 1.21554 1.21279 1.21693 0.92702 0.94065 0.91474 1.43721 1.04662 1.06480 1.53320 1.22266 1.01673 0.80034 1.03795 0.90849 0.89990 0.91794 0.84171 0.83750 0.76206 0.90459 0.91637 0.97062 0.87281 0.93705 0.95034 0.95767 0.90775 0.90307 0.87493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.64 10.08 36.01 0.36 -0.28 16 2 C 0.03 0.39 6.87 -81.95 -0.56 -0.17 16 3 C -0.21 -2.52 10.71 -39.98 -0.43 -2.94 16 4 C -0.14 -1.90 10.35 -39.12 -0.41 -2.30 16 5 C -0.05 -0.73 6.89 -81.98 -0.56 -1.29 16 6 C 0.59 10.25 7.77 -12.86 -0.10 10.15 16 7 O -0.56 -10.83 14.33 5.19 0.07 -10.75 16 8 N -0.70 -11.80 5.09 -53.34 -0.27 -12.08 16 9 C 0.13 2.46 3.29 -66.10 -0.22 2.24 16 10 H 0.09 1.61 7.63 -51.93 -0.40 1.21 16 11 C -0.15 -2.79 6.65 -24.47 -0.16 -2.96 16 12 C 0.15 3.55 5.88 -2.41 -0.01 3.53 16 13 N -0.60 -15.57 3.39 -169.93 -0.58 -16.14 16 14 C -0.22 -6.25 10.27 -15.06 -0.15 -6.41 16 15 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 16 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 17 N -0.92 -26.66 10.08 55.49 0.56 -26.11 16 18 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 22 C 0.13 2.84 6.98 -3.06 -0.02 2.82 16 23 N -0.41 -5.51 3.16 -115.62 -0.37 -5.88 16 24 C 0.06 0.70 10.45 59.85 0.63 1.33 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 27 H 0.06 0.41 7.02 -51.93 -0.36 0.04 16 28 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 29 H 0.14 1.76 7.45 -52.48 -0.39 1.37 16 30 H 0.40 6.26 7.52 -40.82 -0.31 5.96 16 31 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.11 2.90 5.86 -51.93 -0.30 2.60 16 35 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.02 0.57 8.04 -51.93 -0.42 0.16 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.62 7.00 -51.93 -0.36 0.25 16 40 H 0.11 1.37 6.17 -51.93 -0.32 1.05 16 LS Contribution 326.48 15.07 4.92 4.92 Total: -1.00 -32.67 326.48 -8.21 -40.88 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -5.79 Total: 4.66 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -1.74 Total: 3.30 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: -0.65 Total: -60.20 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.07 Total: -10.75 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.67 -8.21 -40.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010170449.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.645 kcal (2) G-P(sol) polarization free energy of solvation -32.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds