Wall clock time and date at job start Mon Mar 30 2020 01:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35456 * 125.56636 * 2 1 4 4 C 1.39828 * 107.86262 * 179.70855 * 3 2 1 5 5 C 1.37867 * 107.09178 * 0.41828 * 4 3 2 6 6 C 1.46681 * 126.23745 * 179.85000 * 5 4 3 7 7 O 1.21697 * 119.99782 * 184.85543 * 6 5 4 8 8 N 1.34768 * 119.99907 * 4.85135 * 6 5 4 9 9 C 1.46506 * 120.00139 * 174.46133 * 8 6 5 10 10 H 1.08996 * 110.77447 * 36.78518 * 9 8 6 11 11 C 1.55147 * 110.71984 * 160.02340 * 9 8 6 12 12 C 1.55131 * 101.48500 * 82.69817 * 11 9 8 13 13 N 1.47428 * 104.72402 * 37.29462 * 12 11 9 14 14 C 1.36928 * 125.64755 * 155.81731 * 13 12 11 15 15 H 1.08003 * 119.99827 * 179.68918 * 14 13 12 16 16 C 1.38813 * 120.00593 * 359.68919 * 14 13 12 17 17 N 1.31618 * 119.99658 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00193 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46972 * 60.00622 * 18 16 14 20 20 H 1.48500 * 109.46977 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47059 * 299.99991 * 18 16 14 22 22 C 1.47020 * 108.69899 * 335.55362 * 13 12 11 23 23 N 1.35530 * 125.56414 * 179.97438 * 2 1 3 24 24 C 1.46509 * 125.67614 * 0.05167 * 23 2 1 25 25 H 1.08999 * 109.46944 * 270.04355 * 1 2 3 26 26 H 1.09008 * 109.46844 * 30.03998 * 1 2 3 27 27 H 1.08998 * 109.47407 * 150.03622 * 1 2 3 28 28 H 1.07997 * 126.06621 * 359.94703 * 3 2 1 29 29 H 1.08007 * 126.45813 * 180.30631 * 4 3 2 30 30 H 0.96999 * 120.00416 * 354.46325 * 8 6 5 31 31 H 1.09000 * 111.00514 * 200.93457 * 11 9 8 32 32 H 1.09000 * 111.00929 * 324.75157 * 11 9 8 33 33 H 1.08993 * 110.49668 * 278.44845 * 12 11 9 34 34 H 1.09004 * 110.34286 * 156.05986 * 12 11 9 35 35 H 0.96996 * 119.99982 * 179.97438 * 17 16 14 36 36 H 1.09002 * 109.88186 * 120.70650 * 22 13 12 37 37 H 1.08997 * 109.88335 * 241.87187 * 22 13 12 38 38 H 1.08997 * 109.46886 * 270.91620 * 24 23 2 39 39 H 1.08993 * 109.46986 * 30.92138 * 24 23 2 40 40 H 1.08995 * 109.46711 * 150.92317 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2949 1.1019 0.0000 4 6 3.6269 0.6767 0.0068 5 6 3.6122 -0.7019 0.0012 6 6 4.7860 -1.5816 0.0020 7 8 4.6435 -2.7865 -0.0926 8 7 6.0223 -1.0554 0.1075 9 6 7.1857 -1.9373 0.2305 10 1 7.0587 -2.8321 -0.3787 11 6 8.4866 -1.1875 -0.1598 12 6 8.8216 -0.4428 1.1592 13 7 8.4504 -1.3882 2.2279 14 6 8.9643 -1.3997 3.4970 15 1 8.6218 -2.1335 4.2116 16 6 9.9254 -0.4683 3.8653 17 7 10.3424 0.4263 2.9946 18 14 10.6258 -0.4836 5.5970 19 1 11.2773 -1.7927 5.8558 20 1 11.6272 0.6041 5.7355 21 1 9.5293 -0.2740 6.5762 22 6 7.4327 -2.3125 1.7070 23 7 2.2953 -1.1025 0.0005 24 6 1.8241 -2.4897 0.0000 25 1 -0.3633 0.0008 1.0277 26 1 -0.3633 0.8897 -0.5145 27 1 -0.3634 -0.8903 -0.5133 28 1 1.9546 2.1268 -0.0008 29 1 4.5025 1.3090 0.0132 30 1 6.1419 -0.0929 0.1019 31 1 9.2766 -1.8891 -0.4277 32 1 8.3027 -0.4816 -0.9698 33 1 8.2343 0.4717 1.2409 34 1 9.8867 -0.2160 1.2063 35 1 11.0137 1.0774 3.2520 36 1 7.7950 -3.3384 1.7732 37 1 6.5091 -2.2058 2.2760 38 1 1.6909 -2.8285 1.0274 39 1 0.8729 -2.5502 -0.5287 40 1 2.5580 -3.1225 -0.4989 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001010170449.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:10 Heat of formation + Delta-G solvation = 17.871004 kcal Electronic energy + Delta-G solvation = -21584.936061 eV Core-core repulsion = 18400.385415 eV Total energy + Delta-G solvation = -3184.550646 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.43548 -40.56569 -38.72605 -35.60667 -34.11914 -33.40001 -32.52278 -30.99049 -29.20340 -27.52553 -27.38272 -26.30209 -23.36298 -22.08538 -21.80206 -21.09070 -20.13669 -19.05601 -18.52911 -17.50415 -16.76803 -16.71476 -16.30787 -15.82478 -15.52877 -15.40654 -14.72689 -14.46511 -14.33967 -14.16123 -13.88683 -13.81410 -13.56042 -13.41248 -13.03106 -12.94606 -12.85183 -12.77486 -12.60427 -12.35767 -12.12828 -12.04965 -11.84665 -11.46529 -11.03959 -10.75293 -10.17011 -9.70711 -9.00997 -8.90071 -7.78123 -5.22434 0.44392 1.46510 1.49255 1.55822 1.62592 1.75985 2.33436 2.43047 2.49497 3.31490 3.62625 3.73933 3.85729 3.93596 3.95831 4.05198 4.26771 4.29174 4.32216 4.52039 4.62340 4.64039 4.72040 4.75914 4.81814 4.88055 4.96837 5.03289 5.10353 5.17351 5.24810 5.42781 5.52970 5.62296 5.80037 5.87368 6.00293 6.31301 6.32160 6.52607 7.10491 7.14843 7.76380 8.39931 9.22977 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024755 B = 0.004034 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.822131 B = 6939.042958 C = 7235.694408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.045 3.955 3 C -0.222 4.222 4 C -0.137 4.137 5 C -0.090 4.090 6 C 0.587 3.413 7 O -0.586 6.586 8 N -0.694 5.694 9 C 0.148 3.852 10 H 0.100 0.900 11 C -0.132 4.132 12 C 0.153 3.847 13 N -0.622 5.622 14 C -0.246 4.246 15 H 0.072 0.928 16 C -0.059 4.059 17 N -0.943 5.943 18 Si 0.979 3.021 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.282 1.282 22 C 0.127 3.873 23 N -0.417 5.417 24 C 0.062 3.938 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.164 0.836 29 H 0.153 0.847 30 H 0.409 0.591 31 H 0.086 0.914 32 H 0.098 0.902 33 H -0.003 1.003 34 H 0.079 0.921 35 H 0.249 0.751 36 H 0.030 0.970 37 H 0.006 0.994 38 H 0.075 0.925 39 H 0.115 0.885 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.396 0.452 -9.738 20.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.072 4.072 3 C -0.245 4.245 4 C -0.164 4.164 5 C -0.202 4.202 6 C 0.377 3.623 7 O -0.469 6.469 8 N -0.344 5.344 9 C 0.042 3.958 10 H 0.118 0.882 11 C -0.171 4.171 12 C 0.029 3.971 13 N -0.348 5.348 14 C -0.375 4.375 15 H 0.090 0.910 16 C -0.252 4.252 17 N -0.592 5.592 18 Si 0.807 3.193 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.209 1.209 22 C 0.001 3.999 23 N -0.091 5.091 24 C -0.079 4.079 25 H 0.103 0.897 26 H 0.120 0.880 27 H 0.097 0.903 28 H 0.182 0.818 29 H 0.170 0.830 30 H 0.245 0.755 31 H 0.104 0.896 32 H 0.117 0.883 33 H 0.015 0.985 34 H 0.097 0.903 35 H 0.059 0.941 36 H 0.048 0.952 37 H 0.024 0.976 38 H 0.094 0.906 39 H 0.133 0.867 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.422 -0.694 -9.663 20.814 hybrid contribution 0.771 0.407 1.228 1.506 sum -17.652 -0.287 -8.435 19.565 Atomic orbital electron populations 1.20539 0.84716 1.04950 1.03977 1.21293 0.95595 0.85159 1.05180 1.20969 0.91817 0.99140 1.12603 1.21657 0.99279 0.91651 1.03772 1.19950 0.84660 0.94010 1.21596 1.17264 0.82934 0.86687 0.75431 1.90703 1.86717 1.16133 1.53360 1.45542 1.04850 1.10917 1.73131 1.21778 0.85098 0.93964 0.94937 0.88186 1.23220 0.95150 1.00154 0.98531 1.21845 1.01140 0.89683 0.84480 1.44766 1.45100 1.34972 1.09994 1.19356 1.17100 1.12882 0.88173 0.90992 1.25553 0.99972 0.97626 1.02056 1.69995 1.34163 1.20732 1.34352 0.85148 0.77681 0.77150 0.79294 1.20389 1.21423 1.20859 1.21770 0.90983 0.93457 0.93726 1.43985 1.04228 1.07674 1.53179 1.22355 1.02560 0.78824 1.04157 0.89725 0.88012 0.90282 0.81809 0.82985 0.75461 0.89550 0.88330 0.98542 0.90337 0.94113 0.95205 0.97634 0.90640 0.86716 0.89687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.08 71.24 0.72 -0.24 16 2 C 0.05 0.95 6.87 41.34 0.28 1.23 16 3 C -0.22 -4.95 10.71 22.01 0.24 -4.71 16 4 C -0.14 -3.65 10.35 22.57 0.23 -3.41 16 5 C -0.09 -2.75 6.89 40.35 0.28 -2.47 16 6 C 0.59 20.56 7.77 86.45 0.67 21.23 16 7 O -0.59 -23.04 14.33 -4.34 -0.06 -23.10 16 8 N -0.69 -23.44 5.09 -440.88 -2.25 -25.69 16 9 C 0.15 5.39 3.29 46.18 0.15 5.55 16 10 H 0.10 3.51 7.63 -2.39 -0.02 3.49 16 11 C -0.13 -4.67 6.65 32.06 0.21 -4.46 16 12 C 0.15 7.31 5.88 86.93 0.51 7.82 16 13 N -0.62 -32.79 3.39 -691.55 -2.35 -35.14 16 14 C -0.25 -14.21 10.27 84.04 0.86 -13.35 16 15 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 16 C -0.06 -3.36 5.49 84.86 0.47 -2.90 16 17 N -0.94 -55.36 10.08 21.65 0.22 -55.14 16 18 Si 0.98 46.04 29.55 68.60 2.03 48.06 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 21 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 22 C 0.13 5.76 6.98 86.73 0.61 6.37 16 23 N -0.42 -10.73 3.16 -519.70 -1.64 -12.37 16 24 C 0.06 1.29 10.45 127.77 1.33 2.63 16 25 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.08 0.68 7.02 -2.39 -0.02 0.67 16 28 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 29 H 0.15 3.61 7.45 -2.91 -0.02 3.59 16 30 H 0.41 12.62 7.52 -92.71 -0.70 11.93 16 31 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 32 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 33 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 34 H 0.08 4.27 5.86 -2.38 -0.01 4.26 16 35 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 36 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.01 0.28 8.04 -2.39 -0.02 0.26 16 38 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.11 1.49 7.00 -2.39 -0.02 1.47 16 40 H 0.08 2.19 6.17 -2.39 -0.01 2.17 16 Total: -1.00 -71.86 326.48 2.86 -69.00 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.35 Total: 21.09 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: 6.57 Total: 13.29 kcal Atomic # 7 Polarization: -122.32 SS G_CDS: -6.02 Total: -128.34 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.06 Total: -23.10 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -71.86 2.86 -69.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010170449.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.870 kcal (2) G-P(sol) polarization free energy of solvation -71.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds