Wall clock time and date at job start Mon Mar 30 2020 01:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39833 * 126.45819 * 2 1 4 4 C 1.35451 * 107.86259 * 180.02562 * 3 2 1 5 5 N 1.35529 * 108.87505 * 359.97438 * 4 3 2 6 6 C 1.46499 * 125.68051 * 179.97438 * 5 4 3 7 7 C 1.37660 * 108.64384 * 0.24222 * 5 4 3 8 8 C 1.46678 * 126.23236 * 179.75395 * 7 5 4 9 9 O 1.21694 * 120.00065 * 266.35392 * 8 7 5 10 10 N 1.34778 * 119.99525 * 86.36096 * 8 7 5 11 11 C 1.46502 * 119.99683 * 185.26461 * 10 8 7 12 12 H 1.09004 * 110.89020 * 328.87939 * 11 10 8 13 13 C 1.55153 * 111.00629 * 204.99585 * 11 10 8 14 14 C 1.54323 * 102.94407 * 277.42958 * 13 11 10 15 15 N 1.47025 * 107.26919 * 337.80499 * 14 13 11 16 16 C 1.36939 * 125.64650 * 178.89281 * 15 14 13 17 17 H 1.07995 * 119.99715 * 174.90139 * 16 15 14 18 18 C 1.38817 * 119.99872 * 354.90825 * 16 15 14 19 19 N 1.31617 * 119.99853 * 6.74662 * 18 16 15 20 20 Si 1.86799 * 119.99710 * 186.74460 * 18 16 15 21 21 H 1.48495 * 109.47099 * 94.98803 * 20 18 16 22 22 H 1.48499 * 109.46823 * 214.98828 * 20 18 16 23 23 H 1.48503 * 109.46984 * 334.98772 * 20 18 16 24 24 C 1.47422 * 108.70235 * 358.94195 * 15 14 13 25 25 H 1.09002 * 109.47022 * 89.97766 * 1 2 3 26 26 H 1.09003 * 109.47145 * 209.97702 * 1 2 3 27 27 H 1.08998 * 109.47157 * 329.97482 * 1 2 3 28 28 H 1.08000 * 126.06775 * 0.03565 * 3 2 1 29 29 H 1.07999 * 125.56216 * 179.97438 * 4 3 2 30 30 H 1.09001 * 109.47125 * 85.26730 * 6 5 4 31 31 H 1.08991 * 109.47256 * 325.26259 * 6 5 4 32 32 H 1.09001 * 109.47069 * 205.26558 * 6 5 4 33 33 H 0.96996 * 120.00591 * 5.26364 * 10 8 7 34 34 H 1.09002 * 110.71929 * 35.79001 * 13 11 10 35 35 H 1.09001 * 110.72004 * 158.88359 * 13 11 10 36 36 H 1.09002 * 109.88090 * 97.22370 * 14 13 11 37 37 H 1.08999 * 109.88050 * 218.38630 * 14 13 11 38 38 H 0.97007 * 119.99509 * 180.02562 * 19 18 16 39 39 H 1.09001 * 110.36370 * 265.28864 * 24 15 14 40 40 H 1.09001 * 110.36266 * 142.97071 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6927 -0.0006 5 7 3.6284 -0.6625 -0.0004 6 6 4.8225 -1.5112 -0.0014 7 6 2.3262 -1.1090 -0.0052 8 6 1.8898 -2.5093 -0.0117 9 8 1.6472 -3.0662 -1.0662 10 7 1.7573 -3.1792 1.1503 11 6 1.4340 -4.6081 1.1393 12 1 0.8227 -4.8615 0.2731 13 6 0.7326 -5.0298 2.4574 14 6 1.9156 -5.2459 3.4246 15 7 3.1101 -5.4949 2.6043 16 6 4.3748 -5.7135 3.0819 17 1 5.1726 -5.9689 2.4003 18 6 4.6311 -5.6071 4.4420 19 7 3.6379 -5.4277 5.2868 20 14 6.3857 -5.7184 5.0732 21 1 6.9464 -4.3513 5.2207 22 1 6.3950 -6.4021 6.3914 23 1 7.2105 -6.4903 4.1093 24 6 2.7210 -5.4690 1.1826 25 1 -0.3633 0.0004 -1.0277 26 1 -0.3633 -0.8902 0.5135 27 1 -0.3633 0.8897 0.5142 28 1 2.0137 2.1548 0.0005 29 1 4.4972 1.3251 -0.0011 30 1 5.1688 -1.6524 1.0225 31 1 5.6073 -1.0335 -0.5877 32 1 4.5799 -2.4793 -0.4396 33 1 1.8761 -2.7154 1.9939 34 1 0.0798 -4.2350 2.8183 35 1 0.1717 -5.9538 2.3173 36 1 2.0637 -4.3545 4.0341 37 1 1.7191 -6.1064 4.0641 38 1 3.8171 -5.3530 6.2372 39 1 2.5143 -6.4786 0.8275 40 1 3.5061 -5.0083 0.5829 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010767263.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:59 Heat of formation + Delta-G solvation = 38.023700 kcal Electronic energy + Delta-G solvation = -22096.444889 eV Core-core repulsion = 18912.768130 eV Total energy + Delta-G solvation = -3183.676759 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.26261 -39.12207 -37.13186 -33.73383 -33.62778 -31.89451 -30.20018 -29.23781 -28.23706 -27.08679 -25.17585 -24.50094 -22.47982 -20.26581 -20.09484 -19.87748 -19.15441 -17.44171 -16.82933 -16.21687 -15.42057 -15.11808 -14.68976 -14.60293 -14.01723 -13.85182 -13.39139 -13.27611 -13.18067 -12.94104 -12.69671 -12.41588 -11.98608 -11.90663 -11.90356 -11.86204 -11.46033 -11.00682 -10.97609 -10.77223 -10.42476 -10.17733 -10.01145 -9.77937 -9.74216 -8.78034 -8.56221 -8.46560 -7.97639 -6.88137 -5.79158 -3.11036 2.03702 2.44177 2.92621 3.20796 3.33654 3.39701 3.41782 3.62696 4.43861 4.79927 4.93931 5.09115 5.23089 5.28666 5.31475 5.39581 5.40245 5.44265 5.55754 5.72506 5.75460 5.80480 5.81016 6.07007 6.12935 6.16305 6.32692 6.39840 6.45928 6.47371 6.59359 6.96145 6.97251 7.14109 7.32282 7.47738 7.52427 7.74020 7.82985 8.18620 8.44156 9.15305 9.75568 10.42023 11.32995 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018174 B = 0.005611 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.300250 B = 4989.166697 C = 5760.013508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.122 4.122 3 C -0.203 4.203 4 C 0.001 3.999 5 N -0.419 5.419 6 C 0.068 3.932 7 C -0.036 4.036 8 C 0.591 3.409 9 O -0.539 6.539 10 N -0.691 5.691 11 C 0.125 3.875 12 H 0.093 0.907 13 C -0.153 4.153 14 C 0.175 3.825 15 N -0.603 5.603 16 C -0.228 4.228 17 H 0.076 0.924 18 C -0.006 4.006 19 N -0.920 5.920 20 Si 0.908 3.092 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.126 3.874 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.138 0.862 29 H 0.165 0.835 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.406 0.594 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.043 0.957 38 H 0.252 0.748 39 H 0.029 0.971 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.302 10.687 -8.164 13.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.130 4.130 3 C -0.227 4.227 4 C -0.132 4.132 5 N -0.093 5.093 6 C -0.074 4.074 7 C -0.150 4.150 8 C 0.375 3.625 9 O -0.416 6.416 10 N -0.341 5.341 11 C 0.019 3.981 12 H 0.111 0.889 13 C -0.192 4.192 14 C 0.050 3.950 15 N -0.330 5.330 16 C -0.356 4.356 17 H 0.094 0.906 18 C -0.203 4.203 19 N -0.567 5.567 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.001 4.001 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.156 0.844 29 H 0.182 0.818 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.241 0.759 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.047 0.953 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.032 9.974 -8.697 13.576 hybrid contribution 1.217 0.166 0.901 1.523 sum -1.815 10.140 -7.795 12.918 Atomic orbital electron populations 1.20165 0.89943 1.02016 1.01741 1.19717 0.95193 0.91014 1.07060 1.20605 0.91726 0.98270 1.12111 1.21821 0.99323 0.82530 1.09547 1.43831 1.05156 1.06269 1.54043 1.22174 0.85579 0.95358 1.04267 1.20123 0.84054 0.93713 1.17119 1.17088 0.77567 0.83683 0.84116 1.90802 1.50691 1.68792 1.31279 1.45903 1.69628 1.10303 1.08254 1.22224 0.97496 0.79402 0.98957 0.88945 1.23218 0.99401 1.00822 0.95746 1.21184 0.82545 1.00580 0.90691 1.44474 1.05111 1.84428 0.99003 1.19030 0.84573 1.40557 0.91422 0.90589 1.24793 0.97484 1.02096 0.95880 1.69965 1.28834 1.56078 1.01838 0.86151 0.84169 0.77487 0.78303 1.21724 1.21711 1.20661 1.21939 0.93941 0.96005 0.88204 0.91780 0.92277 0.91633 0.84382 0.81808 0.89724 0.89645 0.89591 0.75932 0.91488 0.90852 0.93415 0.93910 0.93737 0.95306 0.94282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.20 36.01 0.37 -0.63 16 2 C -0.12 -1.77 6.21 -104.16 -0.65 -2.42 16 3 C -0.20 -2.57 10.76 -39.98 -0.43 -3.00 16 4 C 0.00 0.01 11.38 -16.91 -0.19 -0.18 16 5 N -0.42 -5.94 3.16 -120.24 -0.38 -6.32 16 6 C 0.07 0.83 10.98 59.85 0.66 1.49 16 7 C -0.04 -0.58 6.63 -81.98 -0.54 -1.13 16 8 C 0.59 10.48 6.58 -12.85 -0.08 10.40 16 9 O -0.54 -11.05 16.72 5.19 0.09 -10.97 16 10 N -0.69 -11.89 5.18 -53.03 -0.27 -12.16 16 11 C 0.12 2.23 3.47 -65.78 -0.23 2.00 16 12 H 0.09 1.61 7.47 -51.93 -0.39 1.22 16 13 C -0.15 -2.69 6.55 -24.90 -0.16 -2.86 16 14 C 0.17 4.00 5.37 -3.06 -0.02 3.99 16 15 N -0.60 -14.73 3.39 -170.07 -0.58 -15.31 16 16 C -0.23 -6.14 10.27 -15.06 -0.15 -6.29 16 17 H 0.08 2.01 7.84 -52.49 -0.41 1.59 16 18 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 19 N -0.92 -26.15 10.36 55.49 0.57 -25.57 16 20 Si 0.91 21.54 29.56 -169.99 -5.02 16.51 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C 0.13 2.62 6.93 -2.53 -0.02 2.60 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.75 7.96 -51.93 -0.41 0.34 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.19 7.67 -51.93 -0.40 0.79 16 33 H 0.41 6.94 8.65 -40.82 -0.35 6.58 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.05 1.20 7.29 -51.93 -0.38 0.82 16 37 H 0.04 1.10 7.62 -51.93 -0.40 0.70 16 38 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 334.57 15.07 5.04 5.04 Total: -1.00 -31.74 334.57 -8.20 -39.94 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.10 Total: 5.11 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -1.55 Total: 3.72 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: -0.66 Total: -59.36 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.74 -8.20 -39.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010767263.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.968 kcal (2) G-P(sol) polarization free energy of solvation -31.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds