Wall clock time and date at job start Mon Mar 30 2020 01:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39833 * 126.45819 * 2 1 4 4 C 1.35451 * 107.86259 * 180.02562 * 3 2 1 5 5 N 1.35529 * 108.87505 * 359.97438 * 4 3 2 6 6 C 1.46499 * 125.68051 * 179.97438 * 5 4 3 7 7 C 1.37660 * 108.64384 * 0.24222 * 5 4 3 8 8 C 1.46678 * 126.23236 * 179.75395 * 7 5 4 9 9 O 1.21694 * 120.00065 * 266.35392 * 8 7 5 10 10 N 1.34778 * 119.99525 * 86.36096 * 8 7 5 11 11 C 1.46502 * 119.99683 * 185.26461 * 10 8 7 12 12 H 1.09004 * 110.89020 * 328.87939 * 11 10 8 13 13 C 1.55153 * 111.00629 * 204.99585 * 11 10 8 14 14 C 1.54323 * 102.94407 * 277.42958 * 13 11 10 15 15 N 1.47025 * 107.26919 * 337.80499 * 14 13 11 16 16 C 1.36939 * 125.64650 * 178.89281 * 15 14 13 17 17 H 1.07995 * 119.99715 * 174.90139 * 16 15 14 18 18 C 1.38817 * 119.99872 * 354.90825 * 16 15 14 19 19 N 1.31617 * 119.99853 * 6.74662 * 18 16 15 20 20 Si 1.86799 * 119.99710 * 186.74460 * 18 16 15 21 21 H 1.48495 * 109.47099 * 94.98803 * 20 18 16 22 22 H 1.48499 * 109.46823 * 214.98828 * 20 18 16 23 23 H 1.48503 * 109.46984 * 334.98772 * 20 18 16 24 24 C 1.47422 * 108.70235 * 358.94195 * 15 14 13 25 25 H 1.09002 * 109.47022 * 89.97766 * 1 2 3 26 26 H 1.09003 * 109.47145 * 209.97702 * 1 2 3 27 27 H 1.08998 * 109.47157 * 329.97482 * 1 2 3 28 28 H 1.08000 * 126.06775 * 0.03565 * 3 2 1 29 29 H 1.07999 * 125.56216 * 179.97438 * 4 3 2 30 30 H 1.09001 * 109.47125 * 85.26730 * 6 5 4 31 31 H 1.08991 * 109.47256 * 325.26259 * 6 5 4 32 32 H 1.09001 * 109.47069 * 205.26558 * 6 5 4 33 33 H 0.96996 * 120.00591 * 5.26364 * 10 8 7 34 34 H 1.09002 * 110.71929 * 35.79001 * 13 11 10 35 35 H 1.09001 * 110.72004 * 158.88359 * 13 11 10 36 36 H 1.09002 * 109.88090 * 97.22370 * 14 13 11 37 37 H 1.08999 * 109.88050 * 218.38630 * 14 13 11 38 38 H 0.97007 * 119.99509 * 180.02562 * 19 18 16 39 39 H 1.09001 * 110.36370 * 265.28864 * 24 15 14 40 40 H 1.09001 * 110.36266 * 142.97071 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6927 -0.0006 5 7 3.6284 -0.6625 -0.0004 6 6 4.8225 -1.5112 -0.0014 7 6 2.3262 -1.1090 -0.0052 8 6 1.8898 -2.5093 -0.0117 9 8 1.6472 -3.0662 -1.0662 10 7 1.7573 -3.1792 1.1503 11 6 1.4340 -4.6081 1.1393 12 1 0.8227 -4.8615 0.2731 13 6 0.7326 -5.0298 2.4574 14 6 1.9156 -5.2459 3.4246 15 7 3.1101 -5.4949 2.6043 16 6 4.3748 -5.7135 3.0819 17 1 5.1726 -5.9689 2.4003 18 6 4.6311 -5.6071 4.4420 19 7 3.6379 -5.4277 5.2868 20 14 6.3857 -5.7184 5.0732 21 1 6.9464 -4.3513 5.2207 22 1 6.3950 -6.4021 6.3914 23 1 7.2105 -6.4903 4.1093 24 6 2.7210 -5.4690 1.1826 25 1 -0.3633 0.0004 -1.0277 26 1 -0.3633 -0.8902 0.5135 27 1 -0.3633 0.8897 0.5142 28 1 2.0137 2.1548 0.0005 29 1 4.4972 1.3251 -0.0011 30 1 5.1688 -1.6524 1.0225 31 1 5.6073 -1.0335 -0.5877 32 1 4.5799 -2.4793 -0.4396 33 1 1.8761 -2.7154 1.9939 34 1 0.0798 -4.2350 2.8183 35 1 0.1717 -5.9538 2.3173 36 1 2.0637 -4.3545 4.0341 37 1 1.7191 -6.1064 4.0641 38 1 3.8171 -5.3530 6.2372 39 1 2.5143 -6.4786 0.8275 40 1 3.5061 -5.0083 0.5829 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001010767263.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:59 Heat of formation + Delta-G solvation = 18.121272 kcal Electronic energy + Delta-G solvation = -22097.307923 eV Core-core repulsion = 18912.768130 eV Total energy + Delta-G solvation = -3184.539793 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.33413 -40.55458 -38.77378 -35.44311 -34.63108 -33.68528 -31.41464 -30.85314 -29.50354 -28.59806 -26.52634 -26.07628 -23.77388 -22.01309 -21.45740 -21.13958 -20.41095 -18.94887 -18.40422 -17.65090 -16.75295 -16.60543 -16.17504 -15.99523 -15.62730 -15.40844 -14.89209 -14.43525 -14.16192 -14.00884 -13.95002 -13.85643 -13.65628 -13.59923 -12.92075 -12.89466 -12.85988 -12.83642 -12.44344 -12.34216 -12.13762 -12.03439 -11.86667 -11.64044 -11.19857 -10.71890 -10.16794 -9.45979 -9.04241 -8.88537 -7.87556 -5.20936 0.93935 1.20607 1.44775 1.45265 1.54542 1.94030 2.04369 2.35246 2.47463 3.31756 3.63367 3.65289 3.84859 3.86788 4.03550 4.22385 4.28131 4.28385 4.35646 4.41592 4.57066 4.64063 4.69474 4.83499 4.84836 4.88785 4.92990 5.00852 5.12600 5.16149 5.43071 5.44846 5.47550 5.64396 5.74623 5.95937 6.07923 6.17729 6.37704 6.43465 7.05219 7.09397 7.75094 8.40119 9.23072 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018174 B = 0.005611 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.300250 B = 4989.166697 C = 5760.013508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.126 4.126 3 C -0.213 4.213 4 C 0.012 3.988 5 N -0.427 5.427 6 C 0.068 3.932 7 C -0.081 4.081 8 C 0.599 3.401 9 O -0.572 6.572 10 N -0.687 5.687 11 C 0.136 3.864 12 H 0.105 0.895 13 C -0.134 4.134 14 C 0.184 3.816 15 N -0.619 5.619 16 C -0.240 4.240 17 H 0.076 0.924 18 C -0.058 4.058 19 N -0.946 5.946 20 Si 0.972 3.028 21 H -0.286 1.286 22 H -0.295 1.295 23 H -0.271 1.271 24 C 0.125 3.875 25 H 0.066 0.934 26 H 0.049 0.951 27 H 0.087 0.913 28 H 0.165 0.835 29 H 0.202 0.798 30 H 0.078 0.922 31 H 0.120 0.880 32 H 0.062 0.938 33 H 0.406 0.594 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.020 0.980 37 H 0.008 0.992 38 H 0.247 0.753 39 H 0.036 0.964 40 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.005 12.374 -8.835 15.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.134 4.134 3 C -0.237 4.237 4 C -0.121 4.121 5 N -0.102 5.102 6 C -0.073 4.073 7 C -0.194 4.194 8 C 0.385 3.615 9 O -0.451 6.451 10 N -0.336 5.336 11 C 0.031 3.969 12 H 0.123 0.877 13 C -0.172 4.172 14 C 0.059 3.941 15 N -0.345 5.345 16 C -0.369 4.369 17 H 0.094 0.906 18 C -0.251 4.251 19 N -0.594 5.594 20 Si 0.801 3.199 21 H -0.213 1.213 22 H -0.222 1.222 23 H -0.196 1.196 24 C -0.002 4.002 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.106 0.894 28 H 0.182 0.818 29 H 0.219 0.781 30 H 0.097 0.903 31 H 0.138 0.862 32 H 0.081 0.919 33 H 0.241 0.759 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.038 0.962 37 H 0.027 0.973 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -2.741 11.661 -9.387 15.218 hybrid contribution 1.143 -0.331 1.074 1.603 sum -1.598 11.330 -8.312 14.143 Atomic orbital electron populations 1.20227 0.88892 1.02681 1.02104 1.20151 0.96249 0.91223 1.05805 1.20988 0.91636 0.99025 1.12034 1.22529 1.00720 0.81870 1.06987 1.44023 1.04766 1.07216 1.54186 1.22223 0.85976 0.94762 1.04335 1.20041 0.85559 0.93015 1.20810 1.17323 0.76456 0.84359 0.83409 1.90767 1.52202 1.69869 1.32285 1.45894 1.69423 1.09953 1.08355 1.22082 0.95926 0.79456 0.99478 0.87690 1.23081 0.97585 1.02719 0.93838 1.20949 0.84139 0.97748 0.91258 1.44688 1.04930 1.84188 1.00733 1.19340 0.85808 1.40051 0.91727 0.90632 1.25540 1.01048 1.02421 0.96112 1.70164 1.30491 1.57164 1.01616 0.85158 0.79993 0.77433 0.77352 1.21308 1.22224 1.19614 1.22048 0.95089 0.96871 0.86172 0.91506 0.93192 0.89378 0.81766 0.78105 0.90303 0.86170 0.91864 0.75873 0.89101 0.88806 0.96182 0.97336 0.94336 0.94669 0.95224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.89 10.20 71.24 0.73 -1.16 16 2 C -0.13 -3.46 6.21 -19.56 -0.12 -3.58 16 3 C -0.21 -4.80 10.76 22.01 0.24 -4.56 16 4 C 0.01 0.26 11.38 83.48 0.95 1.21 16 5 N -0.43 -11.52 3.16 -534.32 -1.69 -13.21 16 6 C 0.07 1.62 10.98 127.77 1.40 3.02 16 7 C -0.08 -2.57 6.63 40.35 0.27 -2.30 16 8 C 0.60 21.23 6.58 86.45 0.57 21.79 16 9 O -0.57 -23.59 16.72 -4.33 -0.07 -23.66 16 10 N -0.69 -23.53 5.18 -439.91 -2.28 -25.81 16 11 C 0.14 4.77 3.47 46.38 0.16 4.93 16 12 H 0.11 3.51 7.47 -2.38 -0.02 3.50 16 13 C -0.13 -4.55 6.55 31.78 0.21 -4.35 16 14 C 0.18 8.58 5.37 86.73 0.47 9.04 16 15 N -0.62 -30.67 3.39 -691.98 -2.35 -33.02 16 16 C -0.24 -13.14 10.27 84.03 0.86 -12.28 16 17 H 0.08 4.03 7.84 -2.91 -0.02 4.01 16 18 C -0.06 -3.19 5.48 84.86 0.46 -2.72 16 19 N -0.95 -55.00 10.36 21.65 0.22 -54.77 16 20 Si 0.97 44.63 29.56 68.60 2.03 46.65 16 21 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 22 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 24 C 0.12 5.18 6.93 86.86 0.60 5.78 16 25 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.05 1.22 7.96 -2.39 -0.02 1.20 16 27 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.16 2.73 8.06 -2.91 -0.02 2.70 16 29 H 0.20 2.63 8.06 -2.91 -0.02 2.61 16 30 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.06 1.78 7.67 -2.39 -0.02 1.76 16 33 H 0.41 13.92 8.65 -92.71 -0.80 13.12 16 34 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 35 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 36 H 0.02 1.03 7.29 -2.39 -0.02 1.02 16 37 H 0.01 0.45 7.62 -2.39 -0.02 0.43 16 38 H 0.25 14.04 8.31 -92.70 -0.77 13.27 16 39 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -69.56 334.57 2.89 -66.67 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.23 Total: 22.30 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: 6.80 Total: 14.84 kcal Atomic # 7 Polarization: -120.72 SS G_CDS: -6.09 Total: -126.81 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.07 Total: -23.66 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -69.56 2.89 -66.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010767263.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.795 kcal (2) G-P(sol) polarization free energy of solvation -69.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds