Wall clock time and date at job start Mon Mar 30 2020 01:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39836 * 126.45566 * 2 1 4 4 C 1.35455 * 107.86500 * 179.97438 * 3 2 1 5 5 N 1.35543 * 108.86948 * 359.72520 * 4 3 2 6 6 C 1.46499 * 125.67648 * 180.26579 * 5 4 3 7 7 C 1.37654 * 108.64255 * 0.43973 * 5 4 3 8 8 C 1.46669 * 126.22918 * 179.82716 * 7 5 4 9 9 O 1.21694 * 120.00066 * 98.91352 * 8 7 5 10 10 N 1.34783 * 120.00370 * 278.63235 * 8 7 5 11 11 C 1.46500 * 120.00151 * 175.11713 * 10 8 7 12 12 H 1.09005 * 110.88428 * 31.12060 * 11 10 8 13 13 C 1.55151 * 111.00248 * 155.00291 * 11 10 8 14 14 C 1.54322 * 102.94285 * 153.57532 * 13 11 10 15 15 N 1.47022 * 107.27064 * 337.80732 * 14 13 11 16 16 C 1.36938 * 125.65113 * 178.98467 * 15 14 13 17 17 H 1.07994 * 120.00193 * 179.97438 * 16 15 14 18 18 C 1.38821 * 119.99682 * 359.97438 * 16 15 14 19 19 N 1.31623 * 119.99953 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99890 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47203 * 59.99911 * 20 18 16 22 22 H 1.48496 * 109.47246 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47334 * 300.00029 * 20 18 16 24 24 C 1.47426 * 108.70238 * 358.93866 * 15 14 13 25 25 H 1.08997 * 109.46980 * 270.00589 * 1 2 3 26 26 H 1.08997 * 109.46622 * 30.00701 * 1 2 3 27 27 H 1.08998 * 109.46940 * 150.00268 * 1 2 3 28 28 H 1.08001 * 126.06944 * 0.02562 * 3 2 1 29 29 H 1.08001 * 125.56663 * 179.97438 * 4 3 2 30 30 H 1.08997 * 109.47172 * 275.06880 * 6 5 4 31 31 H 1.08998 * 109.46945 * 35.06775 * 6 5 4 32 32 H 1.09001 * 109.47056 * 155.06952 * 6 5 4 33 33 H 0.96994 * 119.99441 * 355.11806 * 10 8 7 34 34 H 1.09001 * 110.72145 * 271.93934 * 13 11 10 35 35 H 1.08997 * 110.72402 * 35.20964 * 13 11 10 36 36 H 1.09005 * 109.87847 * 97.22251 * 14 13 11 37 37 H 1.08998 * 109.88310 * 218.38701 * 14 13 11 38 38 H 0.97001 * 119.99459 * 180.02562 * 19 18 16 39 39 H 1.08991 * 110.36631 * 265.29294 * 24 15 14 40 40 H 1.08996 * 110.36385 * 142.96856 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6929 0.0006 5 7 3.6284 -0.6625 0.0071 6 6 4.8226 -1.5111 0.0153 7 6 2.3263 -1.1089 0.0008 8 6 1.8900 -2.5092 0.0010 9 8 1.5473 -3.0396 1.0413 10 7 1.8631 -3.2070 -1.1518 11 6 1.5307 -4.6337 -1.1369 12 1 0.8388 -4.8631 -0.3263 13 6 0.9538 -5.0846 -2.5048 14 6 1.3079 -6.5859 -2.5513 15 7 2.4344 -6.7975 -1.6305 16 6 3.0355 -7.9994 -1.3677 17 1 3.8603 -8.0501 -0.6723 18 6 2.5848 -9.1528 -1.9952 19 7 1.5793 -9.0910 -2.8423 20 14 3.4052 -10.7923 -1.6372 21 1 3.2843 -11.1008 -0.1896 22 1 2.7423 -11.8605 -2.4275 23 1 4.8409 -10.7191 -2.0095 24 6 2.8104 -5.5010 -1.0379 25 1 -0.3633 0.0001 1.0276 26 1 -0.3632 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 2.0136 2.1549 0.0004 29 1 4.4973 1.3253 0.0003 30 1 5.1749 -1.6524 -1.0064 31 1 5.6039 -1.0330 0.6062 32 1 4.5774 -2.4791 0.4523 33 1 2.0639 -2.7645 -1.9912 34 1 -0.1264 -4.9420 -2.5337 35 1 1.4365 -4.5491 -3.3223 36 1 0.4511 -7.1789 -2.2312 37 1 1.5985 -6.8671 -3.5635 38 1 1.2641 -9.8971 -3.2804 39 1 3.6220 -5.0457 -1.6053 40 1 3.1012 -5.6305 0.0045 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010767264.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:02 Heat of formation + Delta-G solvation = 39.591793 kcal Electronic energy + Delta-G solvation = -21566.098979 eV Core-core repulsion = 18382.490218 eV Total energy + Delta-G solvation = -3183.608762 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.42785 -39.17354 -37.15948 -34.03136 -33.78931 -31.95018 -30.35550 -29.22754 -28.38512 -26.96151 -25.33496 -24.48642 -22.40198 -20.42218 -20.36285 -20.02568 -19.19017 -17.58061 -16.89672 -16.30531 -15.50592 -15.30818 -14.71991 -14.63455 -14.22084 -13.94569 -13.40200 -13.32561 -13.21793 -12.90570 -12.82489 -12.46479 -12.24558 -12.08102 -12.05426 -11.82941 -11.58080 -11.04255 -10.94177 -10.77146 -10.43393 -10.15703 -9.94453 -9.86525 -9.71479 -8.79760 -8.63361 -8.61554 -8.13696 -6.87337 -5.73614 -3.07672 1.84330 2.30881 2.77615 3.02474 3.39661 3.42912 3.45028 3.47541 4.48900 4.59912 4.76620 4.93258 4.97871 5.17713 5.24467 5.27230 5.30452 5.41706 5.57816 5.62737 5.72048 5.72637 5.75780 5.97527 5.99157 6.14465 6.27650 6.28955 6.40256 6.51860 6.61545 6.80170 6.89864 6.98263 7.14932 7.50714 7.55512 7.64443 7.79133 8.21641 8.30924 9.19081 9.78915 10.43687 11.38097 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032711 B = 0.003850 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.780968 B = 7271.529908 C = 7730.583000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.117 4.117 3 C -0.202 4.202 4 C 0.001 3.999 5 N -0.423 5.423 6 C 0.067 3.933 7 C -0.039 4.039 8 C 0.589 3.411 9 O -0.526 6.526 10 N -0.706 5.706 11 C 0.124 3.876 12 H 0.099 0.901 13 C -0.149 4.149 14 C 0.179 3.821 15 N -0.603 5.603 16 C -0.230 4.230 17 H 0.078 0.922 18 C -0.007 4.007 19 N -0.922 5.922 20 Si 0.914 3.086 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.130 3.870 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.139 0.861 29 H 0.165 0.835 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.399 0.601 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.050 0.950 37 H 0.047 0.953 38 H 0.253 0.747 39 H 0.018 0.982 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.571 19.967 1.738 20.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 C -0.226 4.226 4 C -0.132 4.132 5 N -0.098 5.098 6 C -0.074 4.074 7 C -0.153 4.153 8 C 0.373 3.627 9 O -0.400 6.400 10 N -0.356 5.356 11 C 0.019 3.981 12 H 0.117 0.883 13 C -0.188 4.188 14 C 0.054 3.946 15 N -0.330 5.330 16 C -0.358 4.358 17 H 0.095 0.905 18 C -0.203 4.203 19 N -0.570 5.570 20 Si 0.744 3.256 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.212 1.212 24 C 0.003 3.997 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.157 0.843 29 H 0.183 0.817 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.234 0.766 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.036 0.964 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.618 19.050 2.429 19.382 hybrid contribution 0.698 -0.613 -0.286 0.972 sum 3.315 18.437 2.143 18.855 Atomic orbital electron populations 1.20187 0.89808 1.02045 1.02016 1.19757 0.95306 0.90956 1.06414 1.20647 0.91724 0.98365 1.11906 1.21840 0.99346 0.82487 1.09488 1.43841 1.05092 1.06284 1.54587 1.22164 0.85818 0.95672 1.03793 1.20172 0.83973 0.93713 1.17444 1.17128 0.78036 0.83486 0.84084 1.90855 1.47413 1.69836 1.31943 1.46077 1.69954 1.10719 1.08849 1.22405 0.98525 0.77589 0.99593 0.88254 1.23183 1.00162 1.00550 0.94895 1.21158 0.91107 0.87487 0.94834 1.44372 1.37285 1.02027 1.49288 1.19018 1.11966 0.83370 1.21494 0.90450 1.24806 0.98455 0.97878 0.99163 1.69939 1.27970 1.27419 1.31656 0.86172 0.78531 0.83238 0.77655 1.21090 1.21538 1.21173 1.21801 0.93661 0.87363 0.96910 0.91557 0.91598 0.92185 0.84277 0.81727 0.90202 0.89450 0.89449 0.76639 0.91453 0.92025 0.93151 0.93524 0.93631 0.96428 0.94054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.20 36.01 0.37 -0.57 16 2 C -0.12 -1.50 6.21 -104.16 -0.65 -2.15 16 3 C -0.20 -2.18 10.76 -39.98 -0.43 -2.61 16 4 C 0.00 0.01 11.38 -16.91 -0.19 -0.18 16 5 N -0.42 -4.89 3.16 -120.24 -0.38 -5.27 16 6 C 0.07 0.61 10.98 59.85 0.66 1.26 16 7 C -0.04 -0.56 6.63 -81.98 -0.54 -1.10 16 8 C 0.59 9.60 6.58 -12.85 -0.08 9.52 16 9 O -0.53 -10.69 16.72 5.19 0.09 -10.60 16 10 N -0.71 -10.58 5.19 -53.03 -0.28 -10.86 16 11 C 0.12 2.26 3.46 -65.79 -0.23 2.03 16 12 H 0.10 2.02 7.48 -51.93 -0.39 1.63 16 13 C -0.15 -2.68 6.60 -24.90 -0.16 -2.84 16 14 C 0.18 4.28 5.37 -3.06 -0.02 4.26 16 15 N -0.60 -15.49 3.39 -170.08 -0.58 -16.06 16 16 C -0.23 -6.47 10.28 -15.06 -0.15 -6.63 16 17 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 18 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 19 N -0.92 -26.95 10.31 55.49 0.57 -26.38 16 20 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 C 0.13 2.76 6.93 -2.53 -0.02 2.74 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.71 7.96 -51.93 -0.41 0.30 16 28 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 29 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.95 7.68 -51.93 -0.40 0.55 16 33 H 0.40 5.03 8.55 -40.82 -0.35 4.68 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 0.99 8.00 -51.93 -0.42 0.57 16 36 H 0.05 1.33 7.38 -51.93 -0.38 0.95 16 37 H 0.05 1.22 7.51 -51.93 -0.39 0.83 16 38 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 334.32 15.07 5.04 5.04 Total: -1.00 -33.42 334.32 -8.20 -41.61 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.09 Total: 1.96 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -1.55 Total: 3.45 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -0.66 Total: -58.57 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.42 -8.20 -41.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010767264.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.207 kcal (2) G-P(sol) polarization free energy of solvation -33.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds