Wall clock time and date at job start Mon Mar 30 2020 01:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39836 * 126.45566 * 2 1 4 4 C 1.35455 * 107.86500 * 179.97438 * 3 2 1 5 5 N 1.35543 * 108.86948 * 359.72520 * 4 3 2 6 6 C 1.46499 * 125.67648 * 180.26579 * 5 4 3 7 7 C 1.37654 * 108.64255 * 0.43973 * 5 4 3 8 8 C 1.46669 * 126.22918 * 179.82716 * 7 5 4 9 9 O 1.21694 * 120.00066 * 98.91352 * 8 7 5 10 10 N 1.34783 * 120.00370 * 278.63235 * 8 7 5 11 11 C 1.46500 * 120.00151 * 175.11713 * 10 8 7 12 12 H 1.09005 * 110.88428 * 31.12060 * 11 10 8 13 13 C 1.55151 * 111.00248 * 155.00291 * 11 10 8 14 14 C 1.54322 * 102.94285 * 153.57532 * 13 11 10 15 15 N 1.47022 * 107.27064 * 337.80732 * 14 13 11 16 16 C 1.36938 * 125.65113 * 178.98467 * 15 14 13 17 17 H 1.07994 * 120.00193 * 179.97438 * 16 15 14 18 18 C 1.38821 * 119.99682 * 359.97438 * 16 15 14 19 19 N 1.31623 * 119.99953 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99890 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47203 * 59.99911 * 20 18 16 22 22 H 1.48496 * 109.47246 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47334 * 300.00029 * 20 18 16 24 24 C 1.47426 * 108.70238 * 358.93866 * 15 14 13 25 25 H 1.08997 * 109.46980 * 270.00589 * 1 2 3 26 26 H 1.08997 * 109.46622 * 30.00701 * 1 2 3 27 27 H 1.08998 * 109.46940 * 150.00268 * 1 2 3 28 28 H 1.08001 * 126.06944 * 0.02562 * 3 2 1 29 29 H 1.08001 * 125.56663 * 179.97438 * 4 3 2 30 30 H 1.08997 * 109.47172 * 275.06880 * 6 5 4 31 31 H 1.08998 * 109.46945 * 35.06775 * 6 5 4 32 32 H 1.09001 * 109.47056 * 155.06952 * 6 5 4 33 33 H 0.96994 * 119.99441 * 355.11806 * 10 8 7 34 34 H 1.09001 * 110.72145 * 271.93934 * 13 11 10 35 35 H 1.08997 * 110.72402 * 35.20964 * 13 11 10 36 36 H 1.09005 * 109.87847 * 97.22251 * 14 13 11 37 37 H 1.08998 * 109.88310 * 218.38701 * 14 13 11 38 38 H 0.97001 * 119.99459 * 180.02562 * 19 18 16 39 39 H 1.08991 * 110.36631 * 265.29294 * 24 15 14 40 40 H 1.08996 * 110.36385 * 142.96856 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6929 0.0006 5 7 3.6284 -0.6625 0.0071 6 6 4.8226 -1.5111 0.0153 7 6 2.3263 -1.1089 0.0008 8 6 1.8900 -2.5092 0.0010 9 8 1.5473 -3.0396 1.0413 10 7 1.8631 -3.2070 -1.1518 11 6 1.5307 -4.6337 -1.1369 12 1 0.8388 -4.8631 -0.3263 13 6 0.9538 -5.0846 -2.5048 14 6 1.3079 -6.5859 -2.5513 15 7 2.4344 -6.7975 -1.6305 16 6 3.0355 -7.9994 -1.3677 17 1 3.8603 -8.0501 -0.6723 18 6 2.5848 -9.1528 -1.9952 19 7 1.5793 -9.0910 -2.8423 20 14 3.4052 -10.7923 -1.6372 21 1 3.2843 -11.1008 -0.1896 22 1 2.7423 -11.8605 -2.4275 23 1 4.8409 -10.7191 -2.0095 24 6 2.8104 -5.5010 -1.0379 25 1 -0.3633 0.0001 1.0276 26 1 -0.3632 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 2.0136 2.1549 0.0004 29 1 4.4973 1.3253 0.0003 30 1 5.1749 -1.6524 -1.0064 31 1 5.6039 -1.0330 0.6062 32 1 4.5774 -2.4791 0.4523 33 1 2.0639 -2.7645 -1.9912 34 1 -0.1264 -4.9420 -2.5337 35 1 1.4365 -4.5491 -3.3223 36 1 0.4511 -7.1789 -2.2312 37 1 1.5985 -6.8671 -3.5635 38 1 1.2641 -9.8971 -3.2804 39 1 3.6220 -5.0457 -1.6053 40 1 3.1012 -5.6305 0.0045 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001010767264.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:01 Heat of formation + Delta-G solvation = 17.609007 kcal Electronic energy + Delta-G solvation = -21567.052224 eV Core-core repulsion = 18382.490218 eV Total energy + Delta-G solvation = -3184.562007 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.34096 -40.53702 -38.83958 -35.68120 -34.61578 -33.81624 -31.43406 -30.87792 -29.52679 -28.47859 -26.55247 -26.02463 -23.64141 -22.12737 -21.79802 -21.13212 -20.36762 -19.01868 -18.41953 -17.67283 -16.80420 -16.53089 -16.24801 -16.04764 -15.72443 -15.35675 -14.64070 -14.41617 -14.20321 -14.16065 -14.01910 -13.89467 -13.72321 -13.63557 -12.99095 -12.88335 -12.84244 -12.75776 -12.47631 -12.44499 -12.18888 -12.09642 -11.83848 -11.63788 -11.24766 -10.73371 -10.23157 -9.44599 -9.04620 -8.95327 -7.88293 -5.25069 0.89387 1.22727 1.44940 1.48472 1.54743 1.90466 1.98259 2.30058 2.49835 3.30430 3.60175 3.62095 3.88015 3.90829 3.99300 4.15108 4.24681 4.34466 4.36409 4.42519 4.53747 4.61967 4.66499 4.79537 4.83028 4.88609 4.92150 5.00056 5.13139 5.16105 5.38633 5.42448 5.45841 5.60582 5.70734 5.94784 6.07147 6.15590 6.38602 6.42217 7.04602 7.07165 7.71591 8.35057 9.21592 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032711 B = 0.003850 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.780968 B = 7271.529908 C = 7730.583000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.124 4.124 3 C -0.215 4.215 4 C 0.020 3.980 5 N -0.426 5.426 6 C 0.063 3.937 7 C -0.080 4.080 8 C 0.597 3.403 9 O -0.574 6.574 10 N -0.689 5.689 11 C 0.142 3.858 12 H 0.076 0.924 13 C -0.128 4.128 14 C 0.185 3.815 15 N -0.625 5.625 16 C -0.251 4.251 17 H 0.079 0.921 18 C -0.061 4.061 19 N -0.948 5.948 20 Si 0.980 3.020 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.275 1.275 24 C 0.131 3.869 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.047 0.953 28 H 0.163 0.837 29 H 0.206 0.794 30 H 0.095 0.905 31 H 0.116 0.884 32 H 0.061 0.939 33 H 0.415 0.585 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.014 0.986 37 H 0.019 0.981 38 H 0.249 0.751 39 H 0.035 0.965 40 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.943 22.420 1.371 22.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.132 4.132 3 C -0.239 4.239 4 C -0.114 4.114 5 N -0.101 5.101 6 C -0.078 4.078 7 C -0.192 4.192 8 C 0.383 3.617 9 O -0.452 6.452 10 N -0.340 5.340 11 C 0.036 3.964 12 H 0.095 0.905 13 C -0.166 4.166 14 C 0.060 3.940 15 N -0.352 5.352 16 C -0.380 4.380 17 H 0.097 0.903 18 C -0.254 4.254 19 N -0.596 5.596 20 Si 0.808 3.192 21 H -0.206 1.206 22 H -0.217 1.217 23 H -0.200 1.200 24 C 0.005 3.995 25 H 0.080 0.920 26 H 0.108 0.892 27 H 0.066 0.934 28 H 0.180 0.820 29 H 0.222 0.778 30 H 0.114 0.886 31 H 0.135 0.865 32 H 0.080 0.920 33 H 0.253 0.747 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.032 0.968 37 H 0.037 0.963 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 4.011 21.545 2.042 22.010 hybrid contribution 0.313 -1.289 -0.141 1.334 sum 4.324 20.256 1.901 20.799 Atomic orbital electron populations 1.20231 0.89401 1.02635 1.01894 1.20118 0.96003 0.91462 1.05637 1.20991 0.91810 0.98898 1.12171 1.22543 1.00547 0.81889 1.06430 1.44048 1.04640 1.07207 1.54206 1.22335 0.85647 0.94644 1.05181 1.19869 0.85742 0.92305 1.21326 1.17463 0.76674 0.84360 0.83248 1.90824 1.49559 1.71221 1.33631 1.45823 1.69410 1.09149 1.09605 1.21915 0.96420 0.79084 0.99008 0.90538 1.23002 1.01815 0.96337 0.95496 1.20940 0.89308 0.91001 0.92787 1.44652 1.37676 1.02887 1.49973 1.19397 1.12273 0.84801 1.21504 0.90306 1.25653 0.99255 1.01251 0.99239 1.70153 1.29158 1.27847 1.32469 0.85134 0.77874 0.78761 0.77433 1.20577 1.21679 1.20048 1.21891 0.95430 0.86355 0.95866 0.92026 0.89215 0.93370 0.81963 0.77760 0.88615 0.86509 0.91981 0.74739 0.89310 0.89066 0.96758 0.96264 0.94162 0.94732 0.95561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.81 10.20 71.24 0.73 -1.08 16 2 C -0.12 -2.98 6.21 -19.56 -0.12 -3.10 16 3 C -0.22 -3.95 10.76 22.01 0.24 -3.72 16 4 C 0.02 0.31 11.38 83.48 0.95 1.26 16 5 N -0.43 -8.81 3.16 -534.31 -1.69 -10.50 16 6 C 0.06 0.99 10.98 127.77 1.40 2.39 16 7 C -0.08 -2.14 6.63 40.35 0.27 -1.87 16 8 C 0.60 19.42 6.58 86.44 0.57 19.99 16 9 O -0.57 -24.04 16.72 -4.33 -0.07 -24.11 16 10 N -0.69 -20.08 5.19 -439.92 -2.28 -22.36 16 11 C 0.14 5.16 3.46 46.38 0.16 5.32 16 12 H 0.08 3.19 7.48 -2.38 -0.02 3.18 16 13 C -0.13 -4.48 6.60 31.78 0.21 -4.27 16 14 C 0.18 9.06 5.37 86.73 0.47 9.53 16 15 N -0.62 -32.85 3.39 -692.00 -2.35 -35.20 16 16 C -0.25 -14.41 10.28 84.04 0.86 -13.55 16 17 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 18 C -0.06 -3.48 5.49 84.86 0.47 -3.01 16 19 N -0.95 -56.96 10.31 21.65 0.22 -56.74 16 20 Si 0.98 46.09 29.55 68.60 2.03 48.12 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 22 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 23 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 24 C 0.13 5.62 6.93 86.85 0.60 6.22 16 25 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.05 1.12 7.96 -2.39 -0.02 1.10 16 28 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 29 H 0.21 1.50 8.06 -2.91 -0.02 1.48 16 30 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.31 7.68 -2.39 -0.02 1.29 16 33 H 0.42 9.61 8.55 -92.71 -0.79 8.82 16 34 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.09 2.69 8.00 -2.39 -0.02 2.67 16 36 H 0.01 0.79 7.38 -2.38 -0.02 0.77 16 37 H 0.02 1.03 7.51 -2.39 -0.02 1.01 16 38 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 39 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -75.40 334.32 2.90 -72.51 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.24 Total: 14.17 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 6.80 Total: 14.11 kcal Atomic # 7 Polarization: -118.70 SS G_CDS: -6.10 Total: -124.79 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.07 Total: -24.11 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -75.40 2.90 -72.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010767264.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.118 kcal (2) G-P(sol) polarization free energy of solvation -75.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds