Wall clock time and date at job start Mon Mar 30 2020 02:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35450 * 125.56409 * 2 1 4 4 C 1.39838 * 107.86596 * 179.70417 * 3 2 1 5 5 C 1.50703 * 126.46054 * 180.29980 * 4 3 2 6 6 C 1.37876 * 107.08326 * 0.41431 * 4 3 2 7 7 C 1.46678 * 126.23237 * 179.84723 * 6 4 3 8 8 O 1.21693 * 119.99895 * 359.71395 * 7 6 4 9 9 N 1.34770 * 119.99794 * 179.71933 * 7 6 4 10 10 C 1.46497 * 119.99870 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.88761 * 328.87581 * 10 9 7 12 12 C 1.55160 * 111.00335 * 204.99705 * 10 9 7 13 13 C 1.54330 * 102.94295 * 206.42233 * 12 10 9 14 14 N 1.47022 * 107.27028 * 22.19363 * 13 12 10 15 15 C 1.36932 * 125.64931 * 181.02631 * 14 13 12 16 16 H 1.08003 * 119.99911 * 189.83169 * 15 14 13 17 17 C 1.38813 * 120.00121 * 9.82505 * 15 14 13 18 18 N 1.31619 * 120.00028 * 208.93646 * 17 15 14 19 19 Si 1.86799 * 119.99581 * 28.93908 * 17 15 14 20 20 H 1.48494 * 109.47088 * 275.29889 * 19 17 15 21 21 H 1.48494 * 109.47411 * 35.30569 * 19 17 15 22 22 H 1.48511 * 109.46813 * 155.30380 * 19 17 15 23 23 C 1.47427 * 108.70226 * 1.28562 * 14 13 12 24 24 N 1.35531 * 125.56521 * 179.97438 * 2 1 3 25 25 H 0.96998 * 125.67617 * 0.05115 * 24 2 1 26 26 H 1.09000 * 109.47146 * 270.04459 * 1 2 3 27 27 H 1.08997 * 109.47338 * 30.04237 * 1 2 3 28 28 H 1.09000 * 109.47585 * 150.04236 * 1 2 3 29 29 H 1.08007 * 126.07324 * 359.94204 * 3 2 1 30 30 H 1.09000 * 109.47091 * 270.13921 * 5 4 3 31 31 H 1.09004 * 109.46871 * 30.14015 * 5 4 3 32 32 H 1.08998 * 109.47279 * 150.13825 * 5 4 3 33 33 H 0.96996 * 120.00476 * 359.97438 * 9 7 6 34 34 H 1.08997 * 110.71705 * 88.06458 * 12 10 9 35 35 H 1.08994 * 110.72115 * 324.78718 * 12 10 9 36 36 H 1.09005 * 109.88315 * 262.78055 * 13 12 10 37 37 H 1.08998 * 110.01091 * 141.67921 * 13 12 10 38 38 H 0.97003 * 120.00110 * 4.82678 * 18 17 15 39 39 H 1.09003 * 110.36699 * 94.48441 * 23 14 13 40 40 H 1.09010 * 110.36605 * 216.80488 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2947 1.1018 0.0000 4 6 3.6269 0.6767 0.0069 5 6 4.8485 1.5592 0.0157 6 6 3.6122 -0.7019 0.0014 7 6 4.7860 -1.5815 0.0024 8 8 5.9049 -1.1030 0.0031 9 7 4.6253 -2.9196 0.0022 10 6 5.7976 -3.7981 0.0037 11 1 6.6320 -3.3336 -0.5216 12 6 5.4561 -5.1822 -0.6087 13 6 6.4781 -6.1208 0.0669 14 7 6.9154 -5.4679 1.3095 15 6 7.8362 -5.9667 2.1917 16 1 7.9755 -5.4930 3.1523 17 6 8.5906 -7.0812 1.8516 18 7 9.0236 -7.8946 2.7914 19 14 8.9913 -7.4263 0.0600 20 1 7.8658 -8.1661 -0.5653 21 1 9.1992 -6.1427 -0.6570 22 1 10.2278 -8.2448 -0.0218 23 6 6.1938 -4.1902 1.4514 24 7 2.2952 -1.1025 0.0005 25 1 1.9833 -2.0209 0.0002 26 1 -0.3633 0.0008 1.0277 27 1 -0.3634 0.8896 -0.5145 28 1 -0.3634 -0.8903 -0.5132 29 1 1.9545 2.1269 -0.0009 30 1 5.1476 1.7760 -1.0098 31 1 4.6196 2.4913 0.5323 32 1 5.6620 1.0485 0.5311 33 1 3.7335 -3.3010 0.0019 34 1 5.5982 -5.1714 -1.6893 35 1 4.4373 -5.4752 -0.3555 36 1 7.3329 -6.2739 -0.5920 37 1 6.0105 -7.0783 0.2960 38 1 8.7577 -7.7552 3.7138 39 1 5.3046 -4.3232 2.0677 40 1 6.8464 -3.4319 1.8843 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014965926.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:54 Heat of formation + Delta-G solvation = 30.417554 kcal Electronic energy + Delta-G solvation = -21335.868047 eV Core-core repulsion = 18151.861460 eV Total energy + Delta-G solvation = -3184.006586 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.58181 -39.32322 -37.48590 -34.34375 -32.85623 -32.35470 -31.59338 -29.51144 -28.19905 -27.76515 -26.24566 -23.89679 -21.71345 -21.05584 -20.63716 -20.07526 -19.31427 -18.43313 -17.38862 -16.15396 -15.56927 -15.43008 -15.24491 -14.36649 -14.27244 -13.71401 -13.53959 -13.38080 -13.26282 -13.14501 -13.05699 -12.84987 -12.56421 -12.40662 -12.16976 -12.04913 -11.59655 -11.40538 -11.15943 -11.04788 -10.63660 -10.25006 -9.87926 -9.59579 -9.19757 -8.97273 -8.92273 -8.45177 -8.14601 -7.09443 -6.36960 -3.18075 1.35072 2.51639 2.85025 3.15624 3.38802 3.42749 3.55140 3.72126 4.53292 4.63409 4.74227 4.81859 4.92592 5.04271 5.09890 5.15118 5.27280 5.32687 5.35559 5.46946 5.48741 5.62104 5.76939 5.82805 5.84640 5.86972 6.04981 6.07289 6.27511 6.39085 6.46926 6.50627 6.59829 6.71079 6.76178 6.83573 7.18157 7.55385 7.69304 8.24393 8.34269 9.01839 9.57091 10.23404 11.12326 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033162 B = 0.003732 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.142546 B = 7501.586417 C = 7760.162598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.049 3.951 3 C -0.209 4.209 4 C -0.072 4.072 5 C -0.091 4.091 6 C -0.056 4.056 7 C 0.587 3.413 8 O -0.523 6.523 9 N -0.719 5.719 10 C 0.126 3.874 11 H 0.103 0.897 12 C -0.134 4.134 13 C 0.121 3.879 14 N -0.606 5.606 15 C -0.332 4.332 16 H 0.079 0.921 17 C -0.013 4.013 18 N -0.912 5.912 19 Si 1.053 2.947 20 H -0.293 1.293 21 H -0.292 1.292 22 H -0.298 1.298 23 C 0.128 3.872 24 N -0.538 5.538 25 H 0.414 0.586 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.141 0.859 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.390 0.610 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.030 0.970 37 H 0.043 0.957 38 H 0.264 0.736 39 H 0.025 0.975 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.136 15.323 -8.444 25.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.068 4.068 3 C -0.234 4.234 4 C -0.081 4.081 5 C -0.148 4.148 6 C -0.168 4.168 7 C 0.374 3.626 8 O -0.399 6.399 9 N -0.370 5.370 10 C 0.021 3.979 11 H 0.121 0.879 12 C -0.173 4.173 13 C -0.004 4.004 14 N -0.334 5.334 15 C -0.459 4.459 16 H 0.096 0.904 17 C -0.214 4.214 18 N -0.551 5.551 19 Si 0.886 3.114 20 H -0.221 1.221 21 H -0.220 1.220 22 H -0.226 1.226 23 C 0.001 3.999 24 N -0.136 5.136 25 H 0.251 0.749 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.159 0.841 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.223 0.777 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.047 0.953 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.043 0.957 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.378 14.434 -9.351 24.450 hybrid contribution -1.557 0.349 0.975 1.870 sum -18.935 14.783 -8.376 25.441 Atomic orbital electron populations 1.20403 0.87728 1.03510 1.03011 1.20489 0.93569 0.86262 1.06508 1.20564 0.91843 0.97882 1.13091 1.19946 0.95487 0.91080 1.01547 1.20353 0.94744 0.97490 1.02199 1.20270 0.82781 0.94278 1.19463 1.17047 0.87490 0.81435 0.76602 1.90832 1.24091 1.74910 1.50027 1.45863 1.09642 1.05709 1.75737 1.22440 0.87653 0.88972 0.98826 0.87891 1.22852 0.99896 0.94534 1.00010 1.21601 0.94715 0.95501 0.88591 1.44754 1.47247 1.17817 1.23618 1.20035 1.17081 1.12617 0.96165 0.90363 1.25774 0.96922 0.92790 1.05899 1.70894 1.48444 1.33504 1.02304 0.83982 0.75901 0.75039 0.76470 1.22149 1.21960 1.22580 1.21957 0.95756 0.89036 0.93145 1.41874 1.05493 1.08357 1.57841 0.74926 0.90626 0.89819 0.91575 0.84101 0.91572 0.92103 0.89961 0.77688 0.90786 0.91114 0.95278 0.93884 0.92569 0.95683 0.93182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.45 10.41 36.00 0.37 -0.07 16 2 C 0.05 0.43 7.13 -81.96 -0.58 -0.16 16 3 C -0.21 -2.15 10.66 -39.98 -0.43 -2.57 16 4 C -0.07 -0.91 6.21 -104.15 -0.65 -1.56 16 5 C -0.09 -1.10 9.83 36.01 0.35 -0.74 16 6 C -0.06 -0.72 7.06 -81.98 -0.58 -1.30 16 7 C 0.59 9.02 7.79 -12.86 -0.10 8.92 16 8 O -0.52 -9.91 14.44 5.20 0.08 -9.83 16 9 N -0.72 -9.87 5.19 -52.92 -0.27 -10.14 16 10 C 0.13 2.17 3.44 -65.66 -0.23 1.95 16 11 H 0.10 1.97 7.54 -51.93 -0.39 1.58 16 12 C -0.13 -2.15 6.60 -24.89 -0.16 -2.31 16 13 C 0.12 2.63 5.00 -3.06 -0.02 2.61 16 14 N -0.61 -15.22 3.29 -169.92 -0.56 -15.78 16 15 C -0.33 -9.74 10.41 -15.06 -0.16 -9.89 16 16 H 0.08 2.42 8.06 -52.48 -0.42 2.00 16 17 C -0.01 -0.38 5.41 -17.43 -0.09 -0.47 16 18 N -0.91 -28.76 13.70 55.49 0.76 -28.00 16 19 Si 1.05 26.92 24.74 -169.99 -4.21 22.71 16 20 H -0.29 -6.96 6.74 56.52 0.38 -6.58 16 21 H -0.29 -7.23 6.87 56.52 0.39 -6.84 16 22 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 23 C 0.13 2.71 6.93 -2.41 -0.02 2.69 16 24 N -0.54 -5.03 5.99 -5.70 -0.03 -5.06 16 25 H 0.41 2.67 8.19 -40.82 -0.33 2.34 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 1.18 6.49 -51.93 -0.34 0.84 16 33 H 0.39 4.00 7.70 -40.82 -0.31 3.68 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 0.95 8.00 -51.93 -0.42 0.53 16 36 H 0.03 0.68 3.71 -51.93 -0.19 0.48 16 37 H 0.04 0.96 8.00 -51.93 -0.42 0.54 16 38 H 0.26 8.24 8.73 -40.82 -0.36 7.88 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.05 1.14 8.14 -51.92 -0.42 0.72 16 LS Contribution 324.53 15.07 4.89 4.89 Total: -1.00 -35.20 324.53 -7.44 -42.64 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -5.81 Total: 1.49 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -2.28 Total: -2.91 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -0.11 Total: -58.99 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.08 Total: -9.83 kcal Atomic # 14 Polarization: 26.92 SS G_CDS: -4.21 Total: 22.71 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.20 -7.44 -42.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014965926.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.060 kcal (2) G-P(sol) polarization free energy of solvation -35.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds