Wall clock time and date at job start Mon Mar 30 2020 02:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35450 * 125.56409 * 2 1 4 4 C 1.39838 * 107.86596 * 179.70417 * 3 2 1 5 5 C 1.50703 * 126.46054 * 180.29980 * 4 3 2 6 6 C 1.37876 * 107.08326 * 0.41431 * 4 3 2 7 7 C 1.46678 * 126.23237 * 179.84723 * 6 4 3 8 8 O 1.21693 * 119.99895 * 359.71395 * 7 6 4 9 9 N 1.34770 * 119.99794 * 179.71933 * 7 6 4 10 10 C 1.46497 * 119.99870 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.88761 * 328.87581 * 10 9 7 12 12 C 1.55160 * 111.00335 * 204.99705 * 10 9 7 13 13 C 1.54330 * 102.94295 * 206.42233 * 12 10 9 14 14 N 1.47022 * 107.27028 * 22.19363 * 13 12 10 15 15 C 1.36932 * 125.64931 * 181.02631 * 14 13 12 16 16 H 1.08003 * 119.99911 * 189.83169 * 15 14 13 17 17 C 1.38813 * 120.00121 * 9.82505 * 15 14 13 18 18 N 1.31619 * 120.00028 * 208.93646 * 17 15 14 19 19 Si 1.86799 * 119.99581 * 28.93908 * 17 15 14 20 20 H 1.48494 * 109.47088 * 275.29889 * 19 17 15 21 21 H 1.48494 * 109.47411 * 35.30569 * 19 17 15 22 22 H 1.48511 * 109.46813 * 155.30380 * 19 17 15 23 23 C 1.47427 * 108.70226 * 1.28562 * 14 13 12 24 24 N 1.35531 * 125.56521 * 179.97438 * 2 1 3 25 25 H 0.96998 * 125.67617 * 0.05115 * 24 2 1 26 26 H 1.09000 * 109.47146 * 270.04459 * 1 2 3 27 27 H 1.08997 * 109.47338 * 30.04237 * 1 2 3 28 28 H 1.09000 * 109.47585 * 150.04236 * 1 2 3 29 29 H 1.08007 * 126.07324 * 359.94204 * 3 2 1 30 30 H 1.09000 * 109.47091 * 270.13921 * 5 4 3 31 31 H 1.09004 * 109.46871 * 30.14015 * 5 4 3 32 32 H 1.08998 * 109.47279 * 150.13825 * 5 4 3 33 33 H 0.96996 * 120.00476 * 359.97438 * 9 7 6 34 34 H 1.08997 * 110.71705 * 88.06458 * 12 10 9 35 35 H 1.08994 * 110.72115 * 324.78718 * 12 10 9 36 36 H 1.09005 * 109.88315 * 262.78055 * 13 12 10 37 37 H 1.08998 * 110.01091 * 141.67921 * 13 12 10 38 38 H 0.97003 * 120.00110 * 4.82678 * 18 17 15 39 39 H 1.09003 * 110.36699 * 94.48441 * 23 14 13 40 40 H 1.09010 * 110.36605 * 216.80488 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2947 1.1018 0.0000 4 6 3.6269 0.6767 0.0069 5 6 4.8485 1.5592 0.0157 6 6 3.6122 -0.7019 0.0014 7 6 4.7860 -1.5815 0.0024 8 8 5.9049 -1.1030 0.0031 9 7 4.6253 -2.9196 0.0022 10 6 5.7976 -3.7981 0.0037 11 1 6.6320 -3.3336 -0.5216 12 6 5.4561 -5.1822 -0.6087 13 6 6.4781 -6.1208 0.0669 14 7 6.9154 -5.4679 1.3095 15 6 7.8362 -5.9667 2.1917 16 1 7.9755 -5.4930 3.1523 17 6 8.5906 -7.0812 1.8516 18 7 9.0236 -7.8946 2.7914 19 14 8.9913 -7.4263 0.0600 20 1 7.8658 -8.1661 -0.5653 21 1 9.1992 -6.1427 -0.6570 22 1 10.2278 -8.2448 -0.0218 23 6 6.1938 -4.1902 1.4514 24 7 2.2952 -1.1025 0.0005 25 1 1.9833 -2.0209 0.0002 26 1 -0.3633 0.0008 1.0277 27 1 -0.3634 0.8896 -0.5145 28 1 -0.3634 -0.8903 -0.5132 29 1 1.9545 2.1269 -0.0009 30 1 5.1476 1.7760 -1.0098 31 1 4.6196 2.4913 0.5323 32 1 5.6620 1.0485 0.5311 33 1 3.7335 -3.3010 0.0019 34 1 5.5982 -5.1714 -1.6893 35 1 4.4373 -5.4752 -0.3555 36 1 7.3329 -6.2739 -0.5920 37 1 6.0105 -7.0783 0.2960 38 1 8.7577 -7.7552 3.7138 39 1 5.3046 -4.3232 2.0677 40 1 6.8464 -3.4319 1.8843 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014965926.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:54 Heat of formation + Delta-G solvation = 3.980992 kcal Electronic energy + Delta-G solvation = -21337.014422 eV Core-core repulsion = 18151.861460 eV Total energy + Delta-G solvation = -3185.152962 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.42838 -40.59795 -39.03850 -35.86322 -34.30347 -33.65198 -32.47990 -31.19420 -29.65665 -28.61252 -27.33517 -25.72015 -22.89584 -22.66676 -21.80742 -21.30800 -20.33888 -19.66467 -19.20864 -17.53362 -17.23769 -16.40296 -16.39211 -15.77484 -15.52026 -15.25828 -15.16139 -14.60944 -14.33372 -14.20441 -13.97854 -13.86398 -13.76754 -13.54664 -13.12861 -13.09016 -13.05522 -12.91290 -12.65123 -12.43931 -12.37321 -11.89010 -11.63492 -11.26038 -11.05052 -10.63016 -10.30742 -9.71842 -9.19759 -8.98177 -8.74209 -5.47098 0.40396 1.37752 1.51630 1.71141 1.73014 1.92554 2.16224 2.29581 2.50808 2.95567 3.35881 3.53535 3.79910 3.89057 3.96835 4.01798 4.19907 4.27777 4.29344 4.41097 4.64627 4.70339 4.79521 4.81172 4.82831 4.84596 4.87080 4.91947 4.96152 5.09851 5.15828 5.21164 5.36028 5.48205 5.53706 5.80960 5.95482 6.05424 6.42908 6.59509 6.76382 7.11287 7.39899 8.05433 8.76609 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033162 B = 0.003732 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.142546 B = 7501.586417 C = 7760.162598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.071 3.929 3 C -0.227 4.227 4 C -0.088 4.088 5 C -0.089 4.089 6 C -0.086 4.086 7 C 0.585 3.415 8 O -0.569 6.569 9 N -0.703 5.703 10 C 0.143 3.857 11 H 0.083 0.917 12 C -0.114 4.114 13 C 0.108 3.892 14 N -0.628 5.628 15 C -0.332 4.332 16 H 0.041 0.959 17 C -0.066 4.066 18 N -0.945 5.945 19 Si 1.100 2.900 20 H -0.259 1.259 21 H -0.282 1.282 22 H -0.304 1.304 23 C 0.126 3.874 24 N -0.527 5.527 25 H 0.428 0.572 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.160 0.840 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.411 0.589 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.024 0.976 37 H 0.040 0.960 38 H 0.251 0.749 39 H 0.036 0.964 40 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.895 15.840 -11.001 29.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.047 4.047 3 C -0.251 4.251 4 C -0.098 4.098 5 C -0.146 4.146 6 C -0.198 4.198 7 C 0.375 3.625 8 O -0.449 6.449 9 N -0.354 5.354 10 C 0.036 3.964 11 H 0.101 0.899 12 C -0.152 4.152 13 C -0.017 4.017 14 N -0.356 5.356 15 C -0.460 4.460 16 H 0.059 0.941 17 C -0.261 4.261 18 N -0.587 5.587 19 Si 0.927 3.073 20 H -0.184 1.184 21 H -0.209 1.209 22 H -0.232 1.232 23 C -0.001 4.001 24 N -0.125 5.125 25 H 0.268 0.732 26 H 0.106 0.894 27 H 0.117 0.883 28 H 0.102 0.898 29 H 0.178 0.822 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.248 0.752 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.041 0.959 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -21.224 14.946 -11.920 28.565 hybrid contribution -0.490 0.332 1.900 1.990 sum -21.714 15.278 -10.020 28.378 Atomic orbital electron populations 1.20573 0.84546 1.05166 1.04252 1.21140 0.95269 0.85409 1.02929 1.20858 0.90823 0.99524 1.13850 1.20250 0.96653 0.91346 1.01507 1.20308 0.94082 0.98112 1.02131 1.19864 0.83377 0.93967 1.22565 1.17421 0.87716 0.81846 0.75561 1.90813 1.26123 1.75727 1.52189 1.45546 1.09656 1.04932 1.75262 1.21951 0.88534 0.90373 0.95500 0.89928 1.22824 1.00007 0.91185 1.01218 1.21843 0.95980 0.96709 0.87124 1.44799 1.46706 1.19748 1.24354 1.19898 1.17994 1.12320 0.95758 0.94141 1.27054 0.96941 0.92892 1.09233 1.70996 1.50462 1.35194 1.02031 0.83361 0.76447 0.75635 0.71858 1.18428 1.20883 1.23245 1.22039 0.94948 0.86903 0.96176 1.41837 1.04161 1.09484 1.57020 0.73214 0.89417 0.88330 0.89824 0.82190 0.91434 0.90142 0.92906 0.75206 0.87442 0.87514 0.95858 0.94160 0.94034 0.94646 0.96268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.47 10.41 71.23 0.74 0.27 16 2 C 0.07 0.99 7.13 41.34 0.29 1.29 16 3 C -0.23 -4.06 10.66 22.01 0.23 -3.83 16 4 C -0.09 -2.15 6.21 -19.56 -0.12 -2.28 16 5 C -0.09 -2.18 9.83 71.24 0.70 -1.48 16 6 C -0.09 -2.10 7.06 40.35 0.28 -1.82 16 7 C 0.58 17.71 7.79 86.45 0.67 18.38 16 8 O -0.57 -22.31 14.44 -4.33 -0.06 -22.37 16 9 N -0.70 -17.88 5.19 -439.56 -2.28 -20.16 16 10 C 0.14 4.70 3.44 46.46 0.16 4.86 16 11 H 0.08 3.13 7.54 -2.39 -0.02 3.11 16 12 C -0.11 -3.19 6.60 31.79 0.21 -2.98 16 13 C 0.11 4.43 5.00 86.73 0.43 4.87 16 14 N -0.63 -31.70 3.29 -691.51 -2.27 -33.97 16 15 C -0.33 -20.14 10.41 84.03 0.87 -19.26 16 16 H 0.04 2.68 8.06 -2.91 -0.02 2.66 16 17 C -0.07 -4.03 5.41 84.86 0.46 -3.57 16 18 N -0.94 -61.59 13.70 21.65 0.30 -61.29 16 19 Si 1.10 54.38 24.74 68.60 1.70 56.07 16 20 H -0.26 -11.26 6.74 99.48 0.67 -10.59 16 21 H -0.28 -13.33 6.87 99.48 0.68 -12.64 16 22 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 23 C 0.13 5.37 6.93 86.93 0.60 5.97 16 24 N -0.53 -8.21 5.99 -171.94 -1.03 -9.24 16 25 H 0.43 3.87 8.19 -92.71 -0.76 3.11 16 26 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 30 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.05 1.60 6.49 -2.39 -0.02 1.58 16 33 H 0.41 6.96 7.70 -92.71 -0.71 6.24 16 34 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.11 2.26 8.00 -2.39 -0.02 2.24 16 36 H 0.02 1.02 3.71 -2.38 -0.01 1.01 16 37 H 0.04 1.69 8.00 -2.39 -0.02 1.67 16 38 H 0.25 16.43 8.73 -92.71 -0.81 15.63 16 39 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 Total: -1.00 -81.71 324.53 1.39 -80.32 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -0.50 Total: 10.23 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 5.55 Total: 0.42 kcal Atomic # 7 Polarization: -119.37 SS G_CDS: -5.29 Total: -124.66 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.06 Total: -22.37 kcal Atomic # 14 Polarization: 54.38 SS G_CDS: 1.70 Total: 56.07 kcal Total: -81.71 1.39 -80.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014965926.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.296 kcal (2) G-P(sol) polarization free energy of solvation -81.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds