Wall clock time and date at job start Mon Mar 30 2020 02:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35459 * 125.56113 * 2 1 4 4 C 1.39828 * 107.86107 * 179.71841 * 3 2 1 5 5 C 1.50699 * 126.45640 * 180.26329 * 4 3 2 6 6 C 1.37870 * 107.08753 * 0.41681 * 4 3 2 7 7 C 1.46684 * 126.23457 * 179.84883 * 6 4 3 8 8 O 1.21693 * 119.99717 * 359.71124 * 7 6 4 9 9 N 1.34777 * 119.99811 * 179.71423 * 7 6 4 10 10 C 1.46503 * 119.99520 * 179.97438 * 9 7 6 11 11 H 1.08997 * 110.78015 * 36.78986 * 10 9 7 12 12 C 1.55160 * 110.71803 * 160.02443 * 10 9 7 13 13 C 1.54910 * 101.58122 * 82.86103 * 12 10 9 14 14 N 1.47425 * 104.83231 * 37.00939 * 13 12 10 15 15 C 1.36933 * 125.64542 * 156.13438 * 14 13 12 16 16 H 1.08005 * 119.99541 * 179.69129 * 15 14 13 17 17 C 1.38813 * 120.00564 * 359.69503 * 15 14 13 18 18 N 1.31616 * 119.99514 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00305 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47209 * 89.99775 * 19 17 15 21 21 H 1.48501 * 109.47422 * 209.99954 * 19 17 15 22 22 H 1.48504 * 109.47192 * 329.99911 * 19 17 15 23 23 C 1.47026 * 108.70074 * 335.87083 * 14 13 12 24 24 N 1.35530 * 125.56371 * 179.97438 * 2 1 3 25 25 H 0.96993 * 125.67717 * 0.05177 * 24 2 1 26 26 H 1.09002 * 109.46846 * 270.02501 * 1 2 3 27 27 H 1.09000 * 109.47136 * 30.02250 * 1 2 3 28 28 H 1.08996 * 109.46973 * 150.02652 * 1 2 3 29 29 H 1.07994 * 126.06617 * 359.97438 * 3 2 1 30 30 H 1.08997 * 109.47364 * 270.18016 * 5 4 3 31 31 H 1.08996 * 109.47107 * 30.18100 * 5 4 3 32 32 H 1.09007 * 109.47303 * 150.18318 * 5 4 3 33 33 H 0.96998 * 120.00381 * 359.97438 * 9 7 6 34 34 H 1.08991 * 111.00600 * 200.93720 * 12 10 9 35 35 H 1.09004 * 111.00084 * 324.75166 * 12 10 9 36 36 H 1.09001 * 110.36852 * 278.17238 * 13 12 10 37 37 H 1.08998 * 110.36449 * 155.84885 * 13 12 10 38 38 H 0.97002 * 119.99999 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.87531 * 120.47707 * 23 14 13 40 40 H 1.09000 * 109.87938 * 241.63960 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2949 1.1020 0.0000 4 6 3.6269 0.6768 0.0065 5 6 4.8485 1.5593 0.0145 6 6 3.6122 -0.7018 0.0008 7 6 4.7861 -1.5814 0.0014 8 8 5.9050 -1.1028 0.0021 9 7 4.6254 -2.9195 0.0012 10 6 5.7978 -3.7980 0.0012 11 1 6.5966 -3.3769 0.6117 12 6 5.4192 -5.2188 0.4967 13 6 4.8562 -5.8594 -0.7965 14 7 5.7029 -5.3282 -1.8803 15 6 5.9055 -5.9208 -3.0980 16 1 6.5432 -5.4470 -3.8296 17 6 5.2914 -7.1304 -3.3921 18 7 4.5146 -7.7080 -2.5003 19 14 5.5673 -7.9384 -5.0535 20 1 6.7454 -8.8393 -4.9763 21 1 4.3652 -8.7264 -5.4266 22 1 5.8109 -6.8919 -6.0786 23 6 6.2885 -4.0537 -1.4394 24 7 2.2953 -1.1025 0.0005 25 1 1.9834 -2.0209 0.0002 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5134 29 1 1.9545 2.1268 -0.0004 30 1 5.1467 1.7763 -1.0112 31 1 4.6200 2.4914 0.5313 32 1 5.6624 1.0485 0.5291 33 1 3.7335 -3.3010 0.0010 34 1 6.2991 -5.7573 0.8484 35 1 4.6563 -5.1711 1.2738 36 1 3.8181 -5.5627 -0.9461 37 1 4.9382 -6.9452 -0.7486 38 1 4.0851 -8.5531 -2.7059 39 1 7.3764 -4.1210 -1.4540 40 1 5.9560 -3.2473 -2.0929 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014965927.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:57 Heat of formation + Delta-G solvation = 25.816845 kcal Electronic energy + Delta-G solvation = -21550.238527 eV Core-core repulsion = 18366.032439 eV Total energy + Delta-G solvation = -3184.206088 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.41500 -39.17093 -37.13881 -33.98629 -32.70863 -32.12150 -31.25163 -29.22203 -27.83192 -27.41750 -26.05758 -24.45572 -21.73546 -20.57068 -20.24044 -19.76753 -19.15370 -18.24235 -16.89482 -15.89390 -15.27324 -15.23213 -14.71635 -14.25132 -14.07517 -13.76194 -13.43488 -13.34831 -13.07074 -12.92555 -12.73181 -12.52625 -12.26798 -12.07001 -11.98955 -11.65447 -11.46495 -11.09575 -10.91087 -10.79152 -10.43917 -10.15538 -9.93418 -9.69667 -9.58635 -8.81603 -8.76985 -8.66291 -7.97674 -6.87441 -5.69912 -3.10679 1.52545 2.66610 3.03956 3.37735 3.40652 3.43420 3.45232 3.57748 4.46769 4.69453 4.93452 5.02563 5.19168 5.29446 5.30608 5.41133 5.42375 5.46567 5.63753 5.71837 5.74233 5.82440 5.91971 5.94040 6.17028 6.21502 6.32193 6.41159 6.44533 6.53120 6.70002 6.77561 6.96578 7.04075 7.35584 7.35936 7.59117 7.75050 7.80825 8.30352 8.43583 9.18438 9.79060 10.43359 11.34517 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021516 B = 0.004222 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.055588 B = 6630.344522 C = 7061.999642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.048 3.952 3 C -0.211 4.211 4 C -0.076 4.076 5 C -0.088 4.088 6 C -0.053 4.053 7 C 0.587 3.413 8 O -0.532 6.532 9 N -0.712 5.712 10 C 0.133 3.867 11 H 0.090 0.910 12 C -0.153 4.153 13 C 0.152 3.848 14 N -0.603 5.603 15 C -0.220 4.220 16 H 0.077 0.923 17 C -0.012 4.012 18 N -0.925 5.925 19 Si 0.915 3.085 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.127 3.873 24 N -0.536 5.536 25 H 0.415 0.585 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.140 0.860 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.392 0.608 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.007 0.993 37 H 0.109 0.891 38 H 0.251 0.749 39 H 0.033 0.967 40 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.503 13.721 8.381 17.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.069 4.069 3 C -0.235 4.235 4 C -0.085 4.085 5 C -0.145 4.145 6 C -0.165 4.165 7 C 0.375 3.625 8 O -0.409 6.409 9 N -0.362 5.362 10 C 0.028 3.972 11 H 0.108 0.892 12 C -0.192 4.192 13 C 0.027 3.973 14 N -0.330 5.330 15 C -0.348 4.348 16 H 0.095 0.905 17 C -0.207 4.207 18 N -0.574 5.574 19 Si 0.746 3.254 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.000 4.000 24 N -0.133 5.133 25 H 0.253 0.747 26 H 0.093 0.907 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.158 0.842 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.226 0.774 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.025 0.975 37 H 0.127 0.873 38 H 0.062 0.938 39 H 0.051 0.949 40 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.734 13.685 8.252 17.342 hybrid contribution -0.657 -1.086 -0.978 1.603 sum -7.391 12.599 7.274 16.318 Atomic orbital electron populations 1.20403 0.87800 1.03604 1.02863 1.20487 0.93574 0.86274 1.06581 1.20529 0.91865 0.97775 1.13342 1.19901 0.95419 0.91068 1.02104 1.20323 0.94730 0.97310 1.02180 1.20304 0.82903 0.94264 1.19055 1.17024 0.87409 0.81495 0.76583 1.90783 1.24103 1.75105 1.50932 1.45892 1.10086 1.05394 1.74781 1.22002 0.87203 0.90083 0.97875 0.89197 1.23349 1.01533 0.94260 1.00107 1.21946 0.91242 1.01544 0.82577 1.44518 1.54257 1.19932 1.14257 1.19112 1.23816 1.01749 0.90126 0.90475 1.24761 0.99592 0.97795 0.98555 1.69772 1.35435 1.18842 1.33377 0.86058 0.77150 0.79217 0.83020 1.21528 1.21679 1.20748 1.21698 0.96403 0.89622 0.92262 1.41920 1.05542 1.08496 1.57374 0.74728 0.90739 0.89877 0.91453 0.84209 0.91624 0.92290 0.90107 0.77414 0.90410 0.91851 0.97465 0.87309 0.93783 0.94922 0.95567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.62 10.41 36.01 0.38 -0.25 16 2 C 0.05 0.52 7.13 -81.95 -0.58 -0.07 16 3 C -0.21 -2.49 10.66 -39.98 -0.43 -2.92 16 4 C -0.08 -1.08 6.21 -104.16 -0.65 -1.73 16 5 C -0.09 -1.15 9.83 36.01 0.35 -0.79 16 6 C -0.05 -0.79 7.06 -81.98 -0.58 -1.36 16 7 C 0.59 10.05 7.78 -12.85 -0.10 9.95 16 8 O -0.53 -10.47 14.53 5.20 0.08 -10.39 16 9 N -0.71 -11.62 5.11 -53.33 -0.27 -11.90 16 10 C 0.13 2.42 3.25 -66.10 -0.21 2.21 16 11 H 0.09 1.60 7.70 -51.93 -0.40 1.20 16 12 C -0.15 -2.75 6.64 -24.58 -0.16 -2.92 16 13 C 0.15 3.52 5.87 -2.53 -0.01 3.51 16 14 N -0.60 -15.41 3.39 -170.07 -0.58 -15.99 16 15 C -0.22 -6.17 10.27 -15.06 -0.15 -6.32 16 16 H 0.08 2.13 7.83 -52.48 -0.41 1.71 16 17 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 18 N -0.93 -26.47 10.09 55.49 0.56 -25.91 16 19 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.13 2.80 6.98 -3.07 -0.02 2.78 16 24 N -0.54 -6.34 5.99 -5.69 -0.03 -6.37 16 25 H 0.42 4.02 8.19 -40.82 -0.33 3.68 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.18 6.49 -51.93 -0.34 0.85 16 33 H 0.39 5.69 7.75 -40.82 -0.32 5.37 16 34 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 37 H 0.11 2.87 5.87 -51.93 -0.30 2.56 16 38 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.03 0.62 8.04 -51.93 -0.42 0.20 16 LS Contribution 329.08 15.07 4.96 4.96 Total: -1.00 -32.48 329.08 -8.47 -40.94 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -5.88 Total: 5.93 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -2.27 Total: 1.66 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: -0.32 Total: -60.17 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.08 Total: -10.39 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.48 -8.47 -40.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014965927.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.760 kcal (2) G-P(sol) polarization free energy of solvation -32.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds