Wall clock time and date at job start Mon Mar 30 2020 02:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35459 * 125.56113 * 2 1 4 4 C 1.39828 * 107.86107 * 179.71841 * 3 2 1 5 5 C 1.50699 * 126.45640 * 180.26329 * 4 3 2 6 6 C 1.37870 * 107.08753 * 0.41681 * 4 3 2 7 7 C 1.46684 * 126.23457 * 179.84883 * 6 4 3 8 8 O 1.21693 * 119.99717 * 359.71124 * 7 6 4 9 9 N 1.34777 * 119.99811 * 179.71423 * 7 6 4 10 10 C 1.46503 * 119.99520 * 179.97438 * 9 7 6 11 11 H 1.08997 * 110.78015 * 36.78986 * 10 9 7 12 12 C 1.55160 * 110.71803 * 160.02443 * 10 9 7 13 13 C 1.54910 * 101.58122 * 82.86103 * 12 10 9 14 14 N 1.47425 * 104.83231 * 37.00939 * 13 12 10 15 15 C 1.36933 * 125.64542 * 156.13438 * 14 13 12 16 16 H 1.08005 * 119.99541 * 179.69129 * 15 14 13 17 17 C 1.38813 * 120.00564 * 359.69503 * 15 14 13 18 18 N 1.31616 * 119.99514 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00305 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47209 * 89.99775 * 19 17 15 21 21 H 1.48501 * 109.47422 * 209.99954 * 19 17 15 22 22 H 1.48504 * 109.47192 * 329.99911 * 19 17 15 23 23 C 1.47026 * 108.70074 * 335.87083 * 14 13 12 24 24 N 1.35530 * 125.56371 * 179.97438 * 2 1 3 25 25 H 0.96993 * 125.67717 * 0.05177 * 24 2 1 26 26 H 1.09002 * 109.46846 * 270.02501 * 1 2 3 27 27 H 1.09000 * 109.47136 * 30.02250 * 1 2 3 28 28 H 1.08996 * 109.46973 * 150.02652 * 1 2 3 29 29 H 1.07994 * 126.06617 * 359.97438 * 3 2 1 30 30 H 1.08997 * 109.47364 * 270.18016 * 5 4 3 31 31 H 1.08996 * 109.47107 * 30.18100 * 5 4 3 32 32 H 1.09007 * 109.47303 * 150.18318 * 5 4 3 33 33 H 0.96998 * 120.00381 * 359.97438 * 9 7 6 34 34 H 1.08991 * 111.00600 * 200.93720 * 12 10 9 35 35 H 1.09004 * 111.00084 * 324.75166 * 12 10 9 36 36 H 1.09001 * 110.36852 * 278.17238 * 13 12 10 37 37 H 1.08998 * 110.36449 * 155.84885 * 13 12 10 38 38 H 0.97002 * 119.99999 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.87531 * 120.47707 * 23 14 13 40 40 H 1.09000 * 109.87938 * 241.63960 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2949 1.1020 0.0000 4 6 3.6269 0.6768 0.0065 5 6 4.8485 1.5593 0.0145 6 6 3.6122 -0.7018 0.0008 7 6 4.7861 -1.5814 0.0014 8 8 5.9050 -1.1028 0.0021 9 7 4.6254 -2.9195 0.0012 10 6 5.7978 -3.7980 0.0012 11 1 6.5966 -3.3769 0.6117 12 6 5.4192 -5.2188 0.4967 13 6 4.8562 -5.8594 -0.7965 14 7 5.7029 -5.3282 -1.8803 15 6 5.9055 -5.9208 -3.0980 16 1 6.5432 -5.4470 -3.8296 17 6 5.2914 -7.1304 -3.3921 18 7 4.5146 -7.7080 -2.5003 19 14 5.5673 -7.9384 -5.0535 20 1 6.7454 -8.8393 -4.9763 21 1 4.3652 -8.7264 -5.4266 22 1 5.8109 -6.8919 -6.0786 23 6 6.2885 -4.0537 -1.4394 24 7 2.2953 -1.1025 0.0005 25 1 1.9834 -2.0209 0.0002 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5134 29 1 1.9545 2.1268 -0.0004 30 1 5.1467 1.7763 -1.0112 31 1 4.6200 2.4914 0.5313 32 1 5.6624 1.0485 0.5291 33 1 3.7335 -3.3010 0.0010 34 1 6.2991 -5.7573 0.8484 35 1 4.6563 -5.1711 1.2738 36 1 3.8181 -5.5627 -0.9461 37 1 4.9382 -6.9452 -0.7486 38 1 4.0851 -8.5531 -2.7059 39 1 7.3764 -4.1210 -1.4540 40 1 5.9560 -3.2473 -2.0929 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014965927.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:56 Heat of formation + Delta-G solvation = 4.244924 kcal Electronic energy + Delta-G solvation = -21551.173956 eV Core-core repulsion = 18366.032439 eV Total energy + Delta-G solvation = -3185.141517 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.40888 -40.56158 -38.76687 -35.62058 -33.92308 -33.55110 -32.33545 -30.99618 -29.19543 -28.57316 -27.30833 -26.31142 -22.99020 -22.10455 -21.60493 -21.15685 -20.26914 -19.38709 -18.85388 -17.40834 -16.72207 -16.42503 -16.32660 -15.70671 -15.43712 -15.26502 -14.79575 -14.35044 -14.27464 -13.93324 -13.87610 -13.77381 -13.55888 -13.44686 -13.09128 -13.01506 -12.89852 -12.81747 -12.40829 -12.38492 -12.13807 -12.05461 -11.87852 -11.50993 -11.00490 -10.78535 -10.21335 -9.71389 -8.97507 -8.92334 -7.81614 -5.25378 0.43602 1.45010 1.46239 1.54944 1.74210 2.04421 2.19392 2.34461 2.46890 3.28723 3.63063 3.72444 3.92707 3.96427 4.02891 4.21900 4.26069 4.29452 4.60764 4.64370 4.67447 4.81889 4.84326 4.85578 4.90568 4.92943 4.97405 4.99389 5.15131 5.21415 5.40299 5.48272 5.51001 5.57906 5.76406 5.83404 5.98426 6.28004 6.44237 6.58072 7.08060 7.13598 7.73490 8.36800 9.19889 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021516 B = 0.004222 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.055588 B = 6630.344522 C = 7061.999642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.066 3.934 3 C -0.225 4.225 4 C -0.087 4.087 5 C -0.087 4.087 6 C -0.089 4.089 7 C 0.586 3.414 8 O -0.566 6.566 9 N -0.706 5.706 10 C 0.147 3.853 11 H 0.100 0.900 12 C -0.132 4.132 13 C 0.154 3.846 14 N -0.621 5.621 15 C -0.245 4.245 16 H 0.072 0.928 17 C -0.058 4.058 18 N -0.944 5.944 19 Si 0.978 3.022 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.276 1.276 23 C 0.126 3.874 24 N -0.532 5.532 25 H 0.424 0.576 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.164 0.836 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.402 0.598 34 H 0.085 0.915 35 H 0.098 0.902 36 H -0.004 1.004 37 H 0.078 0.922 38 H 0.249 0.751 39 H 0.029 0.971 40 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.215 14.574 8.962 19.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.053 4.053 3 C -0.248 4.248 4 C -0.096 4.096 5 C -0.144 4.144 6 C -0.201 4.201 7 C 0.375 3.625 8 O -0.446 6.446 9 N -0.356 5.356 10 C 0.041 3.959 11 H 0.118 0.882 12 C -0.171 4.171 13 C 0.030 3.970 14 N -0.348 5.348 15 C -0.374 4.374 16 H 0.090 0.910 17 C -0.251 4.251 18 N -0.593 5.593 19 Si 0.807 3.193 20 H -0.210 1.210 21 H -0.215 1.215 22 H -0.202 1.202 23 C 0.000 4.000 24 N -0.130 5.130 25 H 0.263 0.737 26 H 0.110 0.890 27 H 0.118 0.882 28 H 0.094 0.906 29 H 0.182 0.818 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.237 0.763 34 H 0.103 0.897 35 H 0.117 0.883 36 H 0.014 0.986 37 H 0.096 0.904 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -8.462 14.536 8.849 19.006 hybrid contribution -0.190 -1.282 -1.174 1.749 sum -8.652 13.254 7.675 17.590 Atomic orbital electron populations 1.20572 0.84723 1.04886 1.04370 1.21183 0.95306 0.85469 1.03312 1.20861 0.90835 0.99380 1.13749 1.20264 0.96798 0.91069 1.01501 1.20305 0.93945 0.98109 1.02003 1.20030 0.83389 0.94286 1.22408 1.17357 0.87811 0.81623 0.75670 1.90756 1.25607 1.75638 1.52606 1.45764 1.09987 1.05176 1.74709 1.21764 0.88205 0.90684 0.95199 0.88239 1.23187 1.02529 0.93089 0.98264 1.21781 0.90746 1.00001 0.84496 1.44770 1.54704 1.21084 1.14243 1.19393 1.24170 1.02419 0.91384 0.91048 1.25531 0.99511 0.98200 1.01891 1.69999 1.35800 1.18815 1.34685 0.85085 0.76926 0.78140 0.79188 1.21049 1.21542 1.20171 1.21769 0.96091 0.87743 0.94411 1.41942 1.04625 1.09419 1.56988 0.73723 0.88973 0.88214 0.90573 0.81849 0.91932 0.89765 0.92277 0.76296 0.89668 0.88336 0.98621 0.90417 0.94123 0.95324 0.97534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.90 10.41 71.24 0.74 -0.15 16 2 C 0.07 1.24 7.13 41.35 0.29 1.53 16 3 C -0.22 -4.78 10.66 22.01 0.23 -4.54 16 4 C -0.09 -2.39 6.21 -19.57 -0.12 -2.51 16 5 C -0.09 -2.23 9.83 71.24 0.70 -1.53 16 6 C -0.09 -2.61 7.06 40.35 0.28 -2.32 16 7 C 0.59 20.14 7.78 86.45 0.67 20.81 16 8 O -0.57 -22.79 14.53 -4.32 -0.06 -22.85 16 9 N -0.71 -22.75 5.11 -440.87 -2.25 -25.01 16 10 C 0.15 5.27 3.25 46.18 0.15 5.42 16 11 H 0.10 3.46 7.70 -2.39 -0.02 3.44 16 12 C -0.13 -4.56 6.64 31.99 0.21 -4.35 16 13 C 0.15 7.21 5.87 86.86 0.51 7.72 16 14 N -0.62 -32.35 3.39 -691.99 -2.35 -34.70 16 15 C -0.24 -14.01 10.27 84.03 0.86 -13.14 16 16 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 17 C -0.06 -3.29 5.49 84.86 0.47 -2.82 16 18 N -0.94 -54.64 10.09 21.65 0.22 -54.42 16 19 Si 0.98 45.66 29.55 68.60 2.03 47.69 16 20 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 21 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 23 C 0.13 5.69 6.98 86.73 0.61 6.30 16 24 N -0.53 -11.70 5.99 -171.92 -1.03 -12.73 16 25 H 0.42 7.49 8.19 -92.71 -0.76 6.73 16 26 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.06 1.77 6.49 -2.38 -0.02 1.76 16 33 H 0.40 11.30 7.75 -92.71 -0.72 10.58 16 34 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 35 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 36 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 37 H 0.08 4.16 5.87 -2.39 -0.01 4.14 16 38 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 39 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.01 0.32 8.04 -2.39 -0.02 0.30 16 Total: -1.00 -71.47 329.08 1.75 -69.72 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: -0.42 Total: 21.89 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 5.61 Total: 10.41 kcal Atomic # 7 Polarization: -121.44 SS G_CDS: -5.41 Total: -126.86 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.06 Total: -22.85 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -71.47 1.75 -69.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014965927.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.962 kcal (2) G-P(sol) polarization free energy of solvation -71.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds