Wall clock time and date at job start Mon Mar 30 2020 01:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36769 * 125.80393 * 2 1 4 4 C 1.47267 * 126.94110 * 359.97438 * 3 2 1 5 5 O 1.21628 * 119.99926 * 0.02562 * 4 3 2 6 6 N 1.34778 * 120.00205 * 179.97438 * 4 3 2 7 7 C 1.46502 * 119.99933 * 179.97438 * 6 4 3 8 8 H 1.09001 * 110.91699 * 328.90620 * 7 6 4 9 9 C 1.55157 * 111.00342 * 204.99872 * 7 6 4 10 10 C 1.54325 * 102.94374 * 277.43173 * 9 7 6 11 11 N 1.47015 * 107.27065 * 337.80787 * 10 9 7 12 12 C 1.36944 * 125.65004 * 178.98904 * 11 10 9 13 13 H 1.07997 * 120.00070 * 179.97438 * 12 11 10 14 14 C 1.38814 * 119.99655 * 359.97135 * 12 11 10 15 15 N 1.31617 * 120.00068 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00109 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46851 * 60.00403 * 16 14 12 18 18 H 1.48496 * 109.47522 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47223 * 300.00495 * 16 14 12 20 20 C 1.47425 * 108.70882 * 358.94051 * 11 10 9 21 21 C 1.46681 * 106.11950 * 180.23791 * 3 2 1 22 22 C 1.34491 * 106.32963 * 359.56325 * 21 3 2 23 23 N 1.34655 * 125.80240 * 179.97438 * 2 1 3 24 24 C 1.46504 * 124.85058 * 0.04600 * 23 2 1 25 25 H 1.09000 * 109.46759 * 89.99906 * 1 2 3 26 26 H 1.08997 * 109.47271 * 210.00126 * 1 2 3 27 27 H 1.09005 * 109.47282 * 330.00844 * 1 2 3 28 28 H 0.96994 * 119.99564 * 0.02562 * 6 4 3 29 29 H 1.08996 * 110.71539 * 35.79484 * 9 7 6 30 30 H 1.08993 * 110.71794 * 159.06509 * 9 7 6 31 31 H 1.09000 * 109.88274 * 97.22627 * 10 9 7 32 32 H 1.08997 * 109.87805 * 218.23167 * 10 9 7 33 33 H 0.97001 * 120.00422 * 180.02562 * 15 14 12 34 34 H 1.08999 * 110.36633 * 265.29871 * 20 11 10 35 35 H 1.08996 * 110.37033 * 142.96251 * 20 11 10 36 36 H 1.07996 * 126.83826 * 179.74553 * 21 3 2 37 37 H 1.08000 * 125.57043 * 180.14015 * 22 21 3 38 38 H 1.09005 * 109.46700 * 89.99656 * 24 23 2 39 39 H 1.08995 * 109.47220 * 209.99802 * 24 23 2 40 40 H 1.08998 * 109.47204 * 330.00339 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1092 0.0000 4 6 1.8703 2.5156 -0.0005 5 8 0.6840 2.7839 -0.0006 6 7 2.7850 3.5054 0.0001 7 6 2.3504 4.9045 -0.0010 8 1 1.4029 5.0172 -0.5280 9 6 3.4398 5.8248 -0.6123 10 6 4.3971 6.0627 0.5745 11 7 3.6355 5.8117 1.8067 12 6 4.1294 5.8952 3.0812 13 1 3.4859 5.6911 3.9242 14 6 5.4573 6.2421 3.2896 15 7 6.2414 6.4913 2.2623 16 14 6.1312 6.3554 5.0281 17 1 5.9954 5.0372 5.6984 18 1 7.5647 6.7398 4.9792 19 1 5.3695 7.3783 5.7886 20 6 2.2517 5.4563 1.4432 21 6 3.6882 0.6152 -0.0059 22 6 3.6095 -0.7274 0.0010 23 7 2.2947 -1.0921 0.0005 24 6 1.8094 -2.4744 0.0001 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3634 0.8901 0.5137 28 1 3.7311 3.2914 0.0005 29 1 3.9561 5.3209 -1.4293 30 1 3.0046 6.7648 -0.9512 31 1 5.2409 5.3753 0.5137 32 1 4.7559 7.0918 0.5607 33 1 7.1694 6.7333 2.4079 34 1 1.6139 6.3398 1.4688 35 1 1.8674 4.6902 2.1165 36 1 4.5890 1.2109 -0.0113 37 1 4.4497 -1.4060 0.0014 38 1 1.6896 -2.8171 -1.0277 39 1 2.5283 -3.1121 0.5144 40 1 0.8489 -2.5224 0.5133 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015664607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:13 Heat of formation + Delta-G solvation = 38.287055 kcal Electronic energy + Delta-G solvation = -21659.365402 eV Core-core repulsion = 18475.700063 eV Total energy + Delta-G solvation = -3183.665339 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.28198 -38.95939 -36.95067 -33.59267 -32.84378 -31.62607 -31.45244 -29.11021 -27.52778 -26.41592 -26.17386 -24.33845 -22.28599 -20.42665 -20.00052 -19.42924 -18.84326 -17.36017 -16.73457 -15.73934 -15.66295 -15.41241 -14.56517 -14.24300 -14.19296 -13.69427 -13.56937 -13.11634 -12.98249 -12.88914 -12.65663 -12.48105 -12.28190 -12.04214 -11.81873 -11.70154 -11.44946 -10.88931 -10.82307 -10.57307 -10.23298 -10.09504 -9.85539 -9.59369 -9.33395 -8.64567 -8.55154 -8.34986 -8.03261 -6.73413 -5.64843 -2.96759 1.93303 2.51956 2.77015 3.45152 3.49118 3.50450 3.87932 3.98676 4.54073 4.56594 4.75993 4.85099 4.94376 5.07561 5.25904 5.37626 5.50814 5.55339 5.58943 5.62651 5.68097 5.90318 5.96219 6.00175 6.02932 6.25190 6.36963 6.50450 6.60902 6.69714 6.81399 6.86033 7.09499 7.23365 7.28874 7.61538 7.64867 7.86854 8.20054 8.32859 8.85884 9.29587 9.89720 10.56273 11.47117 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020113 B = 0.004599 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.780502 B = 6086.351883 C = 6740.238152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.097 3.903 3 C -0.229 4.229 4 C 0.590 3.410 5 O -0.564 6.564 6 N -0.699 5.699 7 C 0.130 3.870 8 H 0.089 0.911 9 C -0.154 4.154 10 C 0.177 3.823 11 N -0.604 5.604 12 C -0.222 4.222 13 H 0.075 0.925 14 C -0.009 4.009 15 N -0.924 5.924 16 Si 0.910 3.090 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.286 1.286 20 C 0.125 3.875 21 C -0.161 4.161 22 C -0.024 4.024 23 N -0.449 5.449 24 C 0.069 3.931 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.402 0.598 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.043 0.957 33 H 0.251 0.749 34 H 0.026 0.974 35 H 0.042 0.958 36 H 0.147 0.853 37 H 0.165 0.835 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.013 -16.372 -7.939 19.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.019 4.019 3 C -0.239 4.239 4 C 0.379 3.621 5 O -0.445 6.445 6 N -0.348 5.348 7 C 0.024 3.976 8 H 0.107 0.893 9 C -0.193 4.193 10 C 0.052 3.948 11 N -0.330 5.330 12 C -0.351 4.351 13 H 0.093 0.907 14 C -0.205 4.205 15 N -0.573 5.573 16 Si 0.741 3.259 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.213 1.213 20 C -0.002 4.002 21 C -0.185 4.185 22 C -0.150 4.150 23 N -0.126 5.126 24 C -0.072 4.072 25 H 0.092 0.908 26 H 0.077 0.923 27 H 0.120 0.880 28 H 0.237 0.763 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.044 0.956 35 H 0.060 0.940 36 H 0.165 0.835 37 H 0.183 0.817 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.712 -16.448 -7.833 19.783 hybrid contribution 1.162 -0.107 1.003 1.539 sum -6.550 -16.554 -6.830 19.068 Atomic orbital electron populations 1.20534 0.87265 1.03926 1.03070 1.20273 0.93653 0.85177 1.02808 1.20218 0.93154 0.92239 1.18248 1.17291 0.85347 0.83984 0.75471 1.90676 1.16726 1.84533 1.52592 1.45593 1.09779 1.05488 1.73928 1.22086 0.97772 0.79902 0.97801 0.89302 1.23219 0.97962 0.98481 0.99645 1.21148 0.91422 1.00332 0.81905 1.44464 1.04971 1.81192 1.02408 1.19020 0.93854 1.39673 0.82523 0.90668 1.24752 0.96326 1.02082 0.97337 1.69944 1.05907 1.53600 1.27808 0.86217 0.77871 0.77794 0.83999 1.21308 1.21668 1.21264 1.21953 0.88502 0.96499 0.93261 1.22106 0.96097 0.93542 1.06740 1.21642 0.85234 0.96257 1.11822 1.43502 1.06063 1.05921 1.57144 1.22046 1.01611 0.80345 1.03241 0.90774 0.92310 0.87951 0.76347 0.91654 0.91091 0.93690 0.93884 0.93855 0.95627 0.93969 0.83533 0.81748 0.90896 0.89749 0.89792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.06 9.52 36.00 0.34 -0.72 16 2 C 0.10 1.34 6.89 -81.89 -0.56 0.78 16 3 C -0.23 -3.71 6.29 -103.35 -0.65 -4.36 16 4 C 0.59 11.00 7.81 -12.59 -0.10 10.90 16 5 O -0.56 -11.56 14.45 5.25 0.08 -11.48 16 6 N -0.70 -12.91 5.18 -52.84 -0.27 -13.19 16 7 C 0.13 2.50 3.43 -65.78 -0.23 2.28 16 8 H 0.09 1.66 7.54 -51.93 -0.39 1.26 16 9 C -0.15 -2.89 6.55 -24.90 -0.16 -3.05 16 10 C 0.18 4.26 5.36 -3.07 -0.02 4.24 16 11 N -0.60 -15.71 3.39 -170.07 -0.58 -16.29 16 12 C -0.22 -6.34 10.28 -15.06 -0.15 -6.50 16 13 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 14 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 15 N -0.92 -27.16 10.31 55.49 0.57 -26.59 16 16 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 C 0.12 2.81 6.93 -2.52 -0.02 2.79 16 21 C -0.16 -2.27 10.56 -37.50 -0.40 -2.66 16 22 C -0.02 -0.28 11.34 -16.82 -0.19 -0.47 16 23 N -0.45 -5.00 3.09 -119.88 -0.37 -5.37 16 24 C 0.07 0.44 10.82 59.85 0.65 1.09 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.51 6.92 -51.93 -0.36 0.16 16 27 H 0.10 1.45 6.47 -51.93 -0.34 1.11 16 28 H 0.40 7.20 7.79 -40.82 -0.32 6.89 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.04 1.17 7.38 -51.93 -0.38 0.79 16 32 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 33 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.15 1.94 7.70 -52.49 -0.40 1.53 16 37 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.39 8.13 -51.93 -0.42 -0.03 16 40 H 0.08 0.45 6.87 -51.93 -0.36 0.09 16 LS Contribution 327.91 15.07 4.94 4.94 Total: -1.00 -33.86 327.91 -8.10 -41.97 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.87 Total: 4.58 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -1.58 Total: 3.96 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: -0.65 Total: -61.43 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.08 Total: -11.48 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.86 -8.10 -41.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015664607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.254 kcal (2) G-P(sol) polarization free energy of solvation -33.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds