Wall clock time and date at job start Mon Mar 30 2020 01:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36769 * 125.80393 * 2 1 4 4 C 1.47267 * 126.94110 * 359.97438 * 3 2 1 5 5 O 1.21628 * 119.99926 * 0.02562 * 4 3 2 6 6 N 1.34778 * 120.00205 * 179.97438 * 4 3 2 7 7 C 1.46502 * 119.99933 * 179.97438 * 6 4 3 8 8 H 1.09001 * 110.91699 * 328.90620 * 7 6 4 9 9 C 1.55157 * 111.00342 * 204.99872 * 7 6 4 10 10 C 1.54325 * 102.94374 * 277.43173 * 9 7 6 11 11 N 1.47015 * 107.27065 * 337.80787 * 10 9 7 12 12 C 1.36944 * 125.65004 * 178.98904 * 11 10 9 13 13 H 1.07997 * 120.00070 * 179.97438 * 12 11 10 14 14 C 1.38814 * 119.99655 * 359.97135 * 12 11 10 15 15 N 1.31617 * 120.00068 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00109 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46851 * 60.00403 * 16 14 12 18 18 H 1.48496 * 109.47522 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47223 * 300.00495 * 16 14 12 20 20 C 1.47425 * 108.70882 * 358.94051 * 11 10 9 21 21 C 1.46681 * 106.11950 * 180.23791 * 3 2 1 22 22 C 1.34491 * 106.32963 * 359.56325 * 21 3 2 23 23 N 1.34655 * 125.80240 * 179.97438 * 2 1 3 24 24 C 1.46504 * 124.85058 * 0.04600 * 23 2 1 25 25 H 1.09000 * 109.46759 * 89.99906 * 1 2 3 26 26 H 1.08997 * 109.47271 * 210.00126 * 1 2 3 27 27 H 1.09005 * 109.47282 * 330.00844 * 1 2 3 28 28 H 0.96994 * 119.99564 * 0.02562 * 6 4 3 29 29 H 1.08996 * 110.71539 * 35.79484 * 9 7 6 30 30 H 1.08993 * 110.71794 * 159.06509 * 9 7 6 31 31 H 1.09000 * 109.88274 * 97.22627 * 10 9 7 32 32 H 1.08997 * 109.87805 * 218.23167 * 10 9 7 33 33 H 0.97001 * 120.00422 * 180.02562 * 15 14 12 34 34 H 1.08999 * 110.36633 * 265.29871 * 20 11 10 35 35 H 1.08996 * 110.37033 * 142.96251 * 20 11 10 36 36 H 1.07996 * 126.83826 * 179.74553 * 21 3 2 37 37 H 1.08000 * 125.57043 * 180.14015 * 22 21 3 38 38 H 1.09005 * 109.46700 * 89.99656 * 24 23 2 39 39 H 1.08995 * 109.47220 * 209.99802 * 24 23 2 40 40 H 1.08998 * 109.47204 * 330.00339 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1092 0.0000 4 6 1.8703 2.5156 -0.0005 5 8 0.6840 2.7839 -0.0006 6 7 2.7850 3.5054 0.0001 7 6 2.3504 4.9045 -0.0010 8 1 1.4029 5.0172 -0.5280 9 6 3.4398 5.8248 -0.6123 10 6 4.3971 6.0627 0.5745 11 7 3.6355 5.8117 1.8067 12 6 4.1294 5.8952 3.0812 13 1 3.4859 5.6911 3.9242 14 6 5.4573 6.2421 3.2896 15 7 6.2414 6.4913 2.2623 16 14 6.1312 6.3554 5.0281 17 1 5.9954 5.0372 5.6984 18 1 7.5647 6.7398 4.9792 19 1 5.3695 7.3783 5.7886 20 6 2.2517 5.4563 1.4432 21 6 3.6882 0.6152 -0.0059 22 6 3.6095 -0.7274 0.0010 23 7 2.2947 -1.0921 0.0005 24 6 1.8094 -2.4744 0.0001 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3634 0.8901 0.5137 28 1 3.7311 3.2914 0.0005 29 1 3.9561 5.3209 -1.4293 30 1 3.0046 6.7648 -0.9512 31 1 5.2409 5.3753 0.5137 32 1 4.7559 7.0918 0.5607 33 1 7.1694 6.7333 2.4079 34 1 1.6139 6.3398 1.4688 35 1 1.8674 4.6902 2.1165 36 1 4.5890 1.2109 -0.0113 37 1 4.4497 -1.4060 0.0014 38 1 1.6896 -2.8171 -1.0277 39 1 2.5283 -3.1121 0.5144 40 1 0.8489 -2.5224 0.5133 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015664607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:13 Heat of formation + Delta-G solvation = 16.118294 kcal Electronic energy + Delta-G solvation = -21660.326712 eV Core-core repulsion = 18475.700063 eV Total energy + Delta-G solvation = -3184.626649 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.25407 -40.45922 -38.65480 -35.34321 -33.95695 -33.22178 -32.48684 -30.98866 -29.15275 -27.46129 -27.16617 -26.29439 -23.51998 -21.98929 -21.67457 -20.86933 -19.94494 -18.87862 -18.30072 -17.26224 -16.62433 -16.60352 -16.52247 -15.76364 -15.52311 -15.37550 -14.89986 -14.28877 -14.08258 -13.97522 -13.80784 -13.75787 -13.58498 -13.52119 -13.11425 -12.88649 -12.81929 -12.77248 -12.43792 -12.24756 -12.08265 -12.01855 -11.79609 -11.56874 -10.77817 -10.69820 -10.01116 -9.48355 -9.08459 -8.83506 -7.83163 -5.17535 0.79347 1.45779 1.48765 1.52967 1.55172 1.93049 2.50449 2.52466 2.65254 3.35263 3.70179 3.81472 3.87580 4.00427 4.06734 4.11991 4.23736 4.35126 4.44494 4.46385 4.67099 4.70062 4.75555 4.77215 4.78165 4.92055 4.98567 5.03147 5.05891 5.11058 5.32062 5.44766 5.65440 5.72793 5.78345 5.81848 6.12661 6.21497 6.40552 6.76904 7.13242 7.42746 7.78705 8.43734 9.26726 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020113 B = 0.004599 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.780502 B = 6086.351883 C = 6740.238152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.096 3.904 3 C -0.274 4.274 4 C 0.585 3.415 5 O -0.590 6.590 6 N -0.701 5.701 7 C 0.142 3.858 8 H 0.102 0.898 9 C -0.134 4.134 10 C 0.186 3.814 11 N -0.621 5.621 12 C -0.244 4.244 13 H 0.072 0.928 14 C -0.059 4.059 15 N -0.946 5.946 16 Si 0.976 3.024 17 H -0.280 1.280 18 H -0.290 1.290 19 H -0.280 1.280 20 C 0.123 3.877 21 C -0.190 4.190 22 C -0.008 4.008 23 N -0.442 5.442 24 C 0.059 3.941 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.073 0.927 28 H 0.403 0.597 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.018 0.982 32 H 0.010 0.990 33 H 0.248 0.752 34 H 0.033 0.967 35 H 0.024 0.976 36 H 0.144 0.856 37 H 0.203 0.797 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.301 -18.750 -8.282 21.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.023 4.023 3 C -0.283 4.283 4 C 0.376 3.624 5 O -0.474 6.474 6 N -0.349 5.349 7 C 0.036 3.964 8 H 0.120 0.880 9 C -0.172 4.172 10 C 0.061 3.939 11 N -0.347 5.347 12 C -0.374 4.374 13 H 0.090 0.910 14 C -0.252 4.252 15 N -0.595 5.595 16 Si 0.804 3.196 17 H -0.207 1.207 18 H -0.216 1.216 19 H -0.206 1.206 20 C -0.003 4.003 21 C -0.214 4.214 22 C -0.134 4.134 23 N -0.118 5.118 24 C -0.081 4.081 25 H 0.102 0.898 26 H 0.110 0.890 27 H 0.092 0.908 28 H 0.238 0.762 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.037 0.963 32 H 0.029 0.971 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.042 0.958 36 H 0.161 0.839 37 H 0.219 0.781 38 H 0.109 0.891 39 H 0.125 0.875 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.016 -18.861 -8.186 22.069 hybrid contribution 1.215 0.538 1.122 1.739 sum -6.801 -18.324 -7.064 20.783 Atomic orbital electron populations 1.20510 0.86112 1.04074 1.03700 1.20527 0.94565 0.85519 1.01674 1.20252 0.94937 0.91517 1.21641 1.17745 0.84936 0.85092 0.74600 1.90644 1.17642 1.85148 1.53956 1.45602 1.09918 1.05236 1.74155 1.21934 0.98505 0.80471 0.95506 0.88033 1.23079 0.96567 0.99660 0.97941 1.20928 0.91952 0.97566 0.83438 1.44697 1.06506 1.81202 1.02323 1.19329 0.94361 1.39893 0.83768 0.91026 1.25540 0.96506 1.01983 1.01174 1.70148 1.05762 1.54042 1.29544 0.85198 0.76943 0.77898 0.79539 1.20659 1.21568 1.20598 1.22057 0.86896 0.96294 0.95057 1.22220 0.95277 0.95029 1.08866 1.22171 0.86379 0.95818 1.09032 1.43833 1.05658 1.07167 1.55124 1.22454 1.02860 0.77706 1.05038 0.89824 0.89042 0.90847 0.76226 0.89132 0.88998 0.96343 0.97129 0.94309 0.94967 0.95777 0.83850 0.78063 0.89072 0.87460 0.88538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.91 9.52 71.24 0.68 -1.23 16 2 C 0.10 2.52 6.89 41.78 0.29 2.80 16 3 C -0.27 -8.89 6.29 -19.04 -0.12 -9.01 16 4 C 0.59 22.26 7.81 86.62 0.68 22.94 16 5 O -0.59 -24.72 14.45 -4.12 -0.06 -24.78 16 6 N -0.70 -26.31 5.18 -439.34 -2.28 -28.59 16 7 C 0.14 5.45 3.43 46.39 0.16 5.61 16 8 H 0.10 3.70 7.54 -2.39 -0.02 3.69 16 9 C -0.13 -4.92 6.55 31.78 0.21 -4.71 16 10 C 0.19 9.18 5.36 86.73 0.47 9.64 16 11 N -0.62 -33.15 3.39 -691.99 -2.35 -35.50 16 12 C -0.24 -14.29 10.28 84.03 0.86 -13.43 16 13 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 14 C -0.06 -3.40 5.49 84.86 0.47 -2.93 16 15 N -0.95 -56.88 10.31 21.65 0.22 -56.65 16 16 Si 0.98 46.77 29.55 68.60 2.03 48.80 16 17 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 18 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 20 C 0.12 5.65 6.93 86.86 0.60 6.25 16 21 C -0.19 -5.28 10.56 23.62 0.25 -5.03 16 22 C -0.01 -0.16 11.34 83.12 0.94 0.79 16 23 N -0.44 -8.58 3.09 -533.19 -1.65 -10.23 16 24 C 0.06 0.51 10.82 127.77 1.38 1.89 16 25 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.09 1.35 6.92 -2.39 -0.02 1.33 16 27 H 0.07 2.09 6.47 -2.38 -0.02 2.07 16 28 H 0.40 14.85 7.79 -92.71 -0.72 14.12 16 29 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 30 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 31 H 0.02 0.99 7.38 -2.39 -0.02 0.98 16 32 H 0.01 0.58 7.50 -2.39 -0.02 0.56 16 33 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 34 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.14 3.88 7.70 -2.91 -0.02 3.85 16 37 H 0.20 2.50 8.06 -2.91 -0.02 2.48 16 38 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 39 H 0.11 0.48 8.13 -2.39 -0.02 0.46 16 40 H 0.10 0.62 6.87 -2.39 -0.02 0.60 16 Total: -1.00 -75.68 327.91 3.10 -72.58 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.32 Total: 20.80 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 6.86 Total: 13.57 kcal Atomic # 7 Polarization: -124.92 SS G_CDS: -6.05 Total: -130.97 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.06 Total: -24.78 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -75.68 3.10 -72.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015664607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.698 kcal (2) G-P(sol) polarization free energy of solvation -75.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds