Wall clock time and date at job start Mon Mar 30 2020 01:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36767 * 125.79927 * 2 1 4 4 C 1.47257 * 126.94594 * 359.97438 * 3 2 1 5 5 O 1.21636 * 119.99509 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00287 * 179.97438 * 4 3 2 7 7 C 1.46502 * 120.00005 * 179.97438 * 6 4 3 8 8 H 1.08996 * 110.77956 * 31.76219 * 7 6 4 9 9 C 1.55161 * 110.71706 * 155.00170 * 7 6 4 10 10 C 1.54915 * 101.57651 * 153.86684 * 9 7 6 11 11 N 1.47423 * 104.83394 * 322.98859 * 10 9 7 12 12 C 1.36937 * 125.64616 * 204.08146 * 11 10 9 13 13 H 1.08006 * 119.99613 * 169.99493 * 12 11 10 14 14 C 1.38804 * 120.00391 * 350.00343 * 12 11 10 15 15 N 1.31624 * 120.00023 * 350.41582 * 14 12 11 16 16 Si 1.86796 * 120.00327 * 170.41940 * 14 12 11 17 17 H 1.48502 * 109.47437 * 94.13633 * 16 14 12 18 18 H 1.48507 * 109.47291 * 214.14010 * 16 14 12 19 19 H 1.48503 * 109.47103 * 334.13586 * 16 14 12 20 20 C 1.47021 * 108.70154 * 24.13080 * 11 10 9 21 21 C 1.46693 * 106.11370 * 180.24126 * 3 2 1 22 22 C 1.34489 * 106.33206 * 359.57488 * 21 3 2 23 23 N 1.34658 * 125.79969 * 179.97438 * 2 1 3 24 24 C 1.46496 * 124.85304 * 0.03662 * 23 2 1 25 25 H 1.08995 * 109.47554 * 89.99879 * 1 2 3 26 26 H 1.09001 * 109.47206 * 209.99970 * 1 2 3 27 27 H 1.09003 * 109.47361 * 329.99569 * 1 2 3 28 28 H 0.96998 * 120.00183 * 0.02562 * 6 4 3 29 29 H 1.08995 * 111.00228 * 271.93477 * 9 7 6 30 30 H 1.08992 * 111.00574 * 35.79241 * 9 7 6 31 31 H 1.09002 * 110.36649 * 81.83041 * 10 9 7 32 32 H 1.09000 * 110.36287 * 204.15199 * 10 9 7 33 33 H 0.96994 * 120.00230 * 180.02562 * 15 14 12 34 34 H 1.08998 * 109.88157 * 239.51653 * 20 11 10 35 35 H 1.09004 * 109.88164 * 118.36104 * 20 11 10 36 36 H 1.07994 * 126.83397 * 179.73559 * 21 3 2 37 37 H 1.07995 * 125.57208 * 180.14550 * 22 21 3 38 38 H 1.09002 * 109.47461 * 90.00696 * 24 23 2 39 39 H 1.09008 * 109.46891 * 210.00446 * 24 23 2 40 40 H 1.09000 * 109.47258 * 330.00082 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1093 0.0000 4 6 1.8702 2.5156 -0.0005 5 8 0.6838 2.7838 -0.0006 6 7 2.7849 3.5054 0.0001 7 6 2.3503 4.9044 -0.0010 8 1 1.4075 5.0169 0.5343 9 6 3.4429 5.8191 0.6131 10 6 3.1372 7.1732 -0.0745 11 7 2.7309 6.8169 -1.4460 12 6 2.8101 7.6364 -2.5402 13 1 2.6406 7.2354 -3.5286 14 6 3.1083 8.9824 -2.3791 15 7 3.1290 9.5123 -1.1744 16 14 3.4802 10.0420 -3.8719 17 1 2.2364 10.7169 -4.3222 18 1 4.4959 11.0641 -3.5128 19 1 4.0040 9.1872 -4.9675 20 6 2.2254 5.4363 -1.4443 21 6 3.6882 0.6151 -0.0059 22 6 3.6095 -0.7274 0.0006 23 7 2.2946 -1.0922 0.0005 24 6 1.8093 -2.4744 0.0003 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 3.7310 3.2915 0.0005 29 1 3.3265 5.8949 1.6942 30 1 4.4403 5.4651 0.3528 31 1 2.3247 7.6855 0.4409 32 1 4.0296 7.7988 -0.0937 33 1 3.3370 10.4530 -1.0618 34 1 2.8222 4.8222 -2.1187 35 1 1.1807 5.4236 -1.7550 36 1 4.5889 1.2109 -0.0115 37 1 4.4497 -1.4060 0.0009 38 1 1.6896 -2.8174 -1.0274 39 1 2.5284 -3.1120 0.5147 40 1 0.8489 -2.5224 0.5137 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015664608.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:17 Heat of formation + Delta-G solvation = 37.912944 kcal Electronic energy + Delta-G solvation = -21239.615392 eV Core-core repulsion = 18055.933830 eV Total energy + Delta-G solvation = -3183.681562 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.42528 -39.02510 -36.98815 -33.86822 -32.97043 -31.73124 -31.59034 -29.10162 -27.58460 -26.50102 -26.19501 -24.31888 -22.26442 -20.43068 -20.39895 -19.54689 -18.91429 -17.46706 -16.76433 -15.85788 -15.76670 -15.49002 -14.63106 -14.49712 -14.21668 -13.87457 -13.55425 -13.21366 -13.06030 -12.85845 -12.74935 -12.62770 -12.26491 -12.20169 -11.88025 -11.60259 -11.56432 -10.97674 -10.78116 -10.75503 -10.39073 -10.04190 -9.78736 -9.61459 -9.43486 -8.75312 -8.54621 -8.50134 -8.17465 -6.72392 -5.68302 -3.00262 1.80294 2.35323 2.63703 3.44472 3.49734 3.52093 3.73504 3.82613 4.42819 4.56942 4.64217 4.75034 4.79653 4.98377 5.14409 5.24272 5.46918 5.50169 5.51104 5.58248 5.61861 5.82750 5.89781 5.90817 5.95796 6.14612 6.32383 6.49158 6.57317 6.70165 6.72348 6.88155 6.95554 7.10124 7.20568 7.53977 7.63287 7.83141 8.02740 8.32511 8.72013 9.26213 9.87988 10.55764 11.45053 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037000 B = 0.003345 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.580856 B = 8368.986432 C = 8389.020127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.101 3.899 3 C -0.231 4.231 4 C 0.588 3.412 5 O -0.554 6.554 6 N -0.712 5.712 7 C 0.134 3.866 8 H 0.093 0.907 9 C -0.151 4.151 10 C 0.175 3.825 11 N -0.603 5.603 12 C -0.226 4.226 13 H 0.076 0.924 14 C -0.009 4.009 15 N -0.920 5.920 16 Si 0.911 3.089 17 H -0.289 1.289 18 H -0.290 1.290 19 H -0.281 1.281 20 C 0.128 3.872 21 C -0.165 4.165 22 C -0.023 4.023 23 N -0.448 5.448 24 C 0.068 3.932 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.102 0.898 28 H 0.397 0.603 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.029 0.971 32 H 0.072 0.928 33 H 0.252 0.748 34 H 0.025 0.975 35 H 0.026 0.974 36 H 0.146 0.854 37 H 0.165 0.835 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.724 -24.065 5.373 24.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.016 4.016 3 C -0.241 4.241 4 C 0.377 3.623 5 O -0.434 6.434 6 N -0.361 5.361 7 C 0.029 3.971 8 H 0.111 0.889 9 C -0.190 4.190 10 C 0.049 3.951 11 N -0.330 5.330 12 C -0.354 4.354 13 H 0.093 0.907 14 C -0.205 4.205 15 N -0.567 5.567 16 Si 0.741 3.259 17 H -0.216 1.216 18 H -0.217 1.217 19 H -0.206 1.206 20 C 0.001 3.999 21 C -0.189 4.189 22 C -0.148 4.148 23 N -0.125 5.125 24 C -0.073 4.073 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.121 0.879 28 H 0.231 0.769 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.044 0.956 36 H 0.163 0.837 37 H 0.183 0.817 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.166 -23.987 5.327 24.572 hybrid contribution 0.813 0.386 -0.828 1.223 sum 0.647 -23.602 4.499 24.035 Atomic orbital electron populations 1.20563 0.87145 1.03937 1.03383 1.20318 0.93757 0.85149 1.02343 1.20224 0.93136 0.92227 1.18499 1.17341 0.85487 0.83954 0.75527 1.90723 1.16671 1.84421 1.51566 1.45814 1.09372 1.05963 1.74984 1.22022 0.98795 0.78601 0.97673 0.88865 1.23310 0.97421 0.98903 0.99391 1.21388 0.99624 0.90251 0.83788 1.44446 1.73322 1.09538 1.05648 1.19037 1.41475 0.89206 0.85689 0.90662 1.24814 1.02570 0.96325 0.96800 1.69950 1.54774 1.12134 1.19860 0.86121 0.77742 0.80157 0.81854 1.21644 1.21653 1.20642 1.21625 0.97016 0.87609 0.93651 1.22044 0.95925 0.93539 1.07437 1.21648 0.85315 0.96238 1.11627 1.43526 1.06051 1.06017 1.56948 1.22069 1.01636 0.80197 1.03435 0.90526 0.92225 0.87910 0.76898 0.91667 0.91779 0.95264 0.91002 0.93748 0.95686 0.95558 0.83675 0.81735 0.90759 0.89712 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.01 9.52 36.00 0.34 -0.67 16 2 C 0.10 1.25 6.89 -81.89 -0.56 0.68 16 3 C -0.23 -3.32 6.29 -103.35 -0.65 -3.97 16 4 C 0.59 10.15 7.81 -12.60 -0.10 10.05 16 5 O -0.55 -11.17 14.46 5.25 0.08 -11.09 16 6 N -0.71 -11.71 5.10 -53.15 -0.27 -11.99 16 7 C 0.13 2.60 3.32 -66.09 -0.22 2.38 16 8 H 0.09 1.93 7.55 -51.93 -0.39 1.54 16 9 C -0.15 -2.87 6.71 -24.58 -0.16 -3.03 16 10 C 0.17 4.32 5.42 -2.53 -0.01 4.30 16 11 N -0.60 -16.15 3.39 -170.07 -0.58 -16.73 16 12 C -0.23 -6.54 10.24 -15.06 -0.15 -6.70 16 13 H 0.08 2.13 7.85 -52.48 -0.41 1.72 16 14 C -0.01 -0.25 5.40 -17.43 -0.09 -0.35 16 15 N -0.92 -27.52 10.68 55.49 0.59 -26.93 16 16 Si 0.91 22.56 29.56 -169.99 -5.03 17.53 16 17 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 C 0.13 2.96 6.99 -3.07 -0.02 2.94 16 21 C -0.17 -1.90 10.56 -37.49 -0.40 -2.29 16 22 C -0.02 -0.21 11.34 -16.82 -0.19 -0.40 16 23 N -0.45 -4.29 3.09 -119.88 -0.37 -4.66 16 24 C 0.07 0.35 10.82 59.84 0.65 1.00 16 25 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.46 6.92 -51.93 -0.36 0.10 16 27 H 0.10 1.36 6.47 -51.93 -0.34 1.02 16 28 H 0.40 5.52 7.69 -40.82 -0.31 5.21 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 1.13 8.01 -51.93 -0.42 0.71 16 31 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 32 H 0.07 1.93 6.94 -51.93 -0.36 1.57 16 33 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.03 0.58 8.03 -51.93 -0.42 0.16 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.15 1.40 7.69 -52.49 -0.40 0.99 16 37 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 0.27 8.13 -51.92 -0.42 -0.15 16 40 H 0.08 0.35 6.87 -51.93 -0.36 -0.01 16 LS Contribution 328.06 15.07 4.94 4.94 Total: -1.00 -34.89 328.06 -8.06 -42.96 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.86 Total: 2.00 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -1.58 Total: 3.95 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: -0.63 Total: -60.29 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.08 Total: -11.09 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.03 Total: 17.53 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.89 -8.06 -42.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015664608.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.872 kcal (2) G-P(sol) polarization free energy of solvation -34.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds