Wall clock time and date at job start Mon Mar 30 2020 01:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36767 * 125.79927 * 2 1 4 4 C 1.47257 * 126.94594 * 359.97438 * 3 2 1 5 5 O 1.21636 * 119.99509 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00287 * 179.97438 * 4 3 2 7 7 C 1.46502 * 120.00005 * 179.97438 * 6 4 3 8 8 H 1.08996 * 110.77956 * 31.76219 * 7 6 4 9 9 C 1.55161 * 110.71706 * 155.00170 * 7 6 4 10 10 C 1.54915 * 101.57651 * 153.86684 * 9 7 6 11 11 N 1.47423 * 104.83394 * 322.98859 * 10 9 7 12 12 C 1.36937 * 125.64616 * 204.08146 * 11 10 9 13 13 H 1.08006 * 119.99613 * 169.99493 * 12 11 10 14 14 C 1.38804 * 120.00391 * 350.00343 * 12 11 10 15 15 N 1.31624 * 120.00023 * 350.41582 * 14 12 11 16 16 Si 1.86796 * 120.00327 * 170.41940 * 14 12 11 17 17 H 1.48502 * 109.47437 * 94.13633 * 16 14 12 18 18 H 1.48507 * 109.47291 * 214.14010 * 16 14 12 19 19 H 1.48503 * 109.47103 * 334.13586 * 16 14 12 20 20 C 1.47021 * 108.70154 * 24.13080 * 11 10 9 21 21 C 1.46693 * 106.11370 * 180.24126 * 3 2 1 22 22 C 1.34489 * 106.33206 * 359.57488 * 21 3 2 23 23 N 1.34658 * 125.79969 * 179.97438 * 2 1 3 24 24 C 1.46496 * 124.85304 * 0.03662 * 23 2 1 25 25 H 1.08995 * 109.47554 * 89.99879 * 1 2 3 26 26 H 1.09001 * 109.47206 * 209.99970 * 1 2 3 27 27 H 1.09003 * 109.47361 * 329.99569 * 1 2 3 28 28 H 0.96998 * 120.00183 * 0.02562 * 6 4 3 29 29 H 1.08995 * 111.00228 * 271.93477 * 9 7 6 30 30 H 1.08992 * 111.00574 * 35.79241 * 9 7 6 31 31 H 1.09002 * 110.36649 * 81.83041 * 10 9 7 32 32 H 1.09000 * 110.36287 * 204.15199 * 10 9 7 33 33 H 0.96994 * 120.00230 * 180.02562 * 15 14 12 34 34 H 1.08998 * 109.88157 * 239.51653 * 20 11 10 35 35 H 1.09004 * 109.88164 * 118.36104 * 20 11 10 36 36 H 1.07994 * 126.83397 * 179.73559 * 21 3 2 37 37 H 1.07995 * 125.57208 * 180.14550 * 22 21 3 38 38 H 1.09002 * 109.47461 * 90.00696 * 24 23 2 39 39 H 1.09008 * 109.46891 * 210.00446 * 24 23 2 40 40 H 1.09000 * 109.47258 * 330.00082 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1093 0.0000 4 6 1.8702 2.5156 -0.0005 5 8 0.6838 2.7838 -0.0006 6 7 2.7849 3.5054 0.0001 7 6 2.3503 4.9044 -0.0010 8 1 1.4075 5.0169 0.5343 9 6 3.4429 5.8191 0.6131 10 6 3.1372 7.1732 -0.0745 11 7 2.7309 6.8169 -1.4460 12 6 2.8101 7.6364 -2.5402 13 1 2.6406 7.2354 -3.5286 14 6 3.1083 8.9824 -2.3791 15 7 3.1290 9.5123 -1.1744 16 14 3.4802 10.0420 -3.8719 17 1 2.2364 10.7169 -4.3222 18 1 4.4959 11.0641 -3.5128 19 1 4.0040 9.1872 -4.9675 20 6 2.2254 5.4363 -1.4443 21 6 3.6882 0.6151 -0.0059 22 6 3.6095 -0.7274 0.0006 23 7 2.2946 -1.0922 0.0005 24 6 1.8093 -2.4744 0.0003 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 3.7310 3.2915 0.0005 29 1 3.3265 5.8949 1.6942 30 1 4.4403 5.4651 0.3528 31 1 2.3247 7.6855 0.4409 32 1 4.0296 7.7988 -0.0937 33 1 3.3370 10.4530 -1.0618 34 1 2.8222 4.8222 -2.1187 35 1 1.1807 5.4236 -1.7550 36 1 4.5889 1.2109 -0.0115 37 1 4.4497 -1.4060 0.0009 38 1 1.6896 -2.8174 -1.0274 39 1 2.5284 -3.1120 0.5147 40 1 0.8489 -2.5224 0.5137 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015664608.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:16 Heat of formation + Delta-G solvation = 14.502371 kcal Electronic energy + Delta-G solvation = -21240.630550 eV Core-core repulsion = 18055.933830 eV Total energy + Delta-G solvation = -3184.696721 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.25204 -40.45662 -38.72131 -35.55509 -34.00774 -33.33667 -32.49040 -31.00570 -29.14314 -27.46951 -27.16763 -26.21429 -23.41013 -22.24663 -21.76428 -20.93783 -19.93481 -18.91361 -18.29097 -17.32407 -16.74747 -16.55980 -16.50283 -16.05088 -15.50944 -15.29013 -14.82368 -14.34409 -14.10443 -14.02798 -13.86594 -13.77983 -13.57640 -13.52577 -13.10437 -12.92486 -12.81638 -12.72206 -12.50482 -12.41036 -12.20244 -12.01026 -11.83700 -11.53797 -10.83551 -10.69753 -10.06934 -9.47715 -9.07280 -8.89156 -7.89271 -5.25169 0.77593 1.46282 1.48148 1.55826 1.58242 1.91241 2.40552 2.54032 2.61716 3.29960 3.69586 3.77681 3.87194 4.01540 4.05692 4.07598 4.20328 4.28184 4.44428 4.47632 4.58214 4.67837 4.73880 4.75188 4.77561 4.91563 5.00786 5.01798 5.06409 5.10787 5.32659 5.41947 5.56469 5.63761 5.69782 5.83431 6.13720 6.18662 6.40967 6.75382 7.06711 7.41542 7.72688 8.39481 9.22656 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037000 B = 0.003345 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.580856 B = 8368.986432 C = 8389.020127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.093 3.907 3 C -0.271 4.271 4 C 0.583 3.417 5 O -0.593 6.593 6 N -0.702 5.702 7 C 0.151 3.849 8 H 0.078 0.922 9 C -0.127 4.127 10 C 0.178 3.822 11 N -0.622 5.622 12 C -0.251 4.251 13 H 0.074 0.926 14 C -0.061 4.061 15 N -0.947 5.947 16 Si 0.982 3.018 17 H -0.287 1.287 18 H -0.287 1.287 19 H -0.269 1.269 20 C 0.129 3.871 21 C -0.184 4.184 22 C -0.008 4.008 23 N -0.442 5.442 24 C 0.058 3.942 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.412 0.588 29 H 0.094 0.906 30 H 0.086 0.914 31 H -0.001 1.001 32 H 0.046 0.954 33 H 0.251 0.749 34 H 0.029 0.971 35 H 0.003 0.997 36 H 0.159 0.841 37 H 0.205 0.795 38 H 0.086 0.914 39 H 0.111 0.889 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.190 -26.924 5.336 27.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.026 4.026 3 C -0.281 4.281 4 C 0.374 3.626 5 O -0.476 6.476 6 N -0.352 5.352 7 C 0.045 3.955 8 H 0.096 0.904 9 C -0.166 4.166 10 C 0.052 3.948 11 N -0.349 5.349 12 C -0.379 4.379 13 H 0.092 0.908 14 C -0.254 4.254 15 N -0.595 5.595 16 Si 0.809 3.191 17 H -0.214 1.214 18 H -0.213 1.213 19 H -0.194 1.194 20 C 0.002 3.998 21 C -0.207 4.207 22 C -0.135 4.135 23 N -0.118 5.118 24 C -0.081 4.081 25 H 0.094 0.906 26 H 0.111 0.889 27 H 0.092 0.908 28 H 0.249 0.751 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.017 0.983 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.021 0.979 36 H 0.176 0.824 37 H 0.222 0.778 38 H 0.105 0.895 39 H 0.129 0.871 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.327 -26.909 5.294 27.457 hybrid contribution 0.307 1.162 -0.824 1.458 sum 1.635 -25.746 4.470 26.183 Atomic orbital electron populations 1.20505 0.86732 1.04111 1.03377 1.20481 0.94373 0.85850 1.01904 1.20169 0.95357 0.90831 1.21724 1.17889 0.84920 0.85320 0.74440 1.90697 1.18320 1.85193 1.53410 1.45594 1.10216 1.04427 1.74961 1.21588 0.98577 0.80447 0.94903 0.90362 1.23123 0.98150 0.94921 1.00407 1.21230 0.97279 0.92866 0.83381 1.44743 1.73637 1.10574 1.05937 1.19390 1.41894 0.90127 0.86536 0.90767 1.25690 1.02412 0.97465 0.99847 1.70145 1.55257 1.12208 1.21844 0.85034 0.77361 0.78164 0.78526 1.21405 1.21347 1.19397 1.21687 0.95398 0.86376 0.96303 1.22282 0.95049 0.94803 1.08590 1.22267 0.86150 0.96121 1.08915 1.43841 1.05901 1.06993 1.55053 1.22445 1.02950 0.77888 1.04857 0.90580 0.88917 0.90832 0.75146 0.88801 0.89588 0.98265 0.93571 0.94010 0.95269 0.97912 0.82363 0.77843 0.89525 0.87089 0.88680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.90 9.52 71.23 0.68 -1.22 16 2 C 0.09 2.17 6.89 41.78 0.29 2.46 16 3 C -0.27 -7.59 6.29 -19.04 -0.12 -7.71 16 4 C 0.58 20.42 7.81 86.61 0.68 21.09 16 5 O -0.59 -24.94 14.46 -4.14 -0.06 -25.00 16 6 N -0.70 -22.88 5.10 -440.32 -2.24 -25.13 16 7 C 0.15 5.94 3.32 46.18 0.15 6.09 16 8 H 0.08 3.35 7.55 -2.39 -0.02 3.33 16 9 C -0.13 -4.73 6.71 31.99 0.21 -4.52 16 10 C 0.18 9.02 5.42 86.86 0.47 9.49 16 11 N -0.62 -34.33 3.39 -691.99 -2.35 -36.68 16 12 C -0.25 -14.88 10.24 84.03 0.86 -14.02 16 13 H 0.07 4.29 7.85 -2.91 -0.02 4.27 16 14 C -0.06 -3.56 5.40 84.86 0.46 -3.10 16 15 N -0.95 -58.05 10.68 21.65 0.23 -57.82 16 16 Si 0.98 46.91 29.56 68.60 2.03 48.94 16 17 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 18 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 20 C 0.13 6.14 6.99 86.73 0.61 6.75 16 21 C -0.18 -3.82 10.56 23.62 0.25 -3.57 16 22 C -0.01 -0.13 11.34 83.12 0.94 0.82 16 23 N -0.44 -7.04 3.09 -533.20 -1.65 -8.69 16 24 C 0.06 0.36 10.82 127.77 1.38 1.74 16 25 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.09 1.25 6.92 -2.39 -0.02 1.23 16 27 H 0.07 2.02 6.47 -2.39 -0.02 2.00 16 28 H 0.41 10.90 7.69 -92.71 -0.71 10.19 16 29 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 30 H 0.09 2.85 8.01 -2.39 -0.02 2.84 16 31 H 0.00 -0.04 8.07 -2.39 -0.02 -0.06 16 32 H 0.05 2.56 6.94 -2.39 -0.02 2.54 16 33 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 34 H 0.03 1.36 8.03 -2.39 -0.02 1.34 16 35 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 36 H 0.16 2.67 7.69 -2.91 -0.02 2.65 16 37 H 0.20 1.40 8.06 -2.91 -0.02 1.38 16 38 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.11 0.15 8.13 -2.38 -0.02 0.13 16 40 H 0.09 0.41 6.87 -2.39 -0.02 0.40 16 Total: -1.00 -79.17 328.06 3.15 -76.02 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.33 Total: 14.06 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 6.86 Total: 14.30 kcal Atomic # 7 Polarization: -122.30 SS G_CDS: -6.01 Total: -128.31 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.06 Total: -25.00 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -79.17 3.15 -76.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015664608.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.518 kcal (2) G-P(sol) polarization free energy of solvation -79.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds