Wall clock time and date at job start Mon Mar 30 2020 01:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34479 * 125.56910 * 2 1 4 4 C 1.46683 * 106.33228 * 180.02562 * 3 2 1 5 5 C 1.47265 * 126.94646 * 179.97438 * 4 3 2 6 6 O 1.21625 * 120.00110 * 180.02562 * 5 4 3 7 7 N 1.34771 * 119.99953 * 0.02641 * 5 4 3 8 8 C 1.46501 * 120.00244 * 180.02562 * 7 5 4 9 9 H 1.09003 * 110.88347 * 328.87417 * 8 7 5 10 10 C 1.55154 * 111.00325 * 205.00052 * 8 7 5 11 11 C 1.54334 * 102.94217 * 206.41962 * 10 8 7 12 12 N 1.47020 * 107.26790 * 22.19151 * 11 10 8 13 13 C 1.36935 * 125.64918 * 181.02250 * 12 11 10 14 14 H 1.07993 * 120.00251 * 168.93127 * 13 12 11 15 15 C 1.38813 * 119.99633 * 348.93623 * 13 12 11 16 16 N 1.31619 * 119.99946 * 165.68026 * 15 13 12 17 17 Si 1.86792 * 120.00267 * 345.67982 * 15 13 12 18 18 H 1.48501 * 109.47512 * 185.28256 * 17 15 13 19 19 H 1.48508 * 109.47127 * 305.28168 * 17 15 13 20 20 H 1.48495 * 109.47289 * 65.27833 * 17 15 13 21 21 C 1.47431 * 108.70583 * 1.28516 * 12 11 10 22 22 C 1.36775 * 106.11728 * 0.24034 * 4 3 2 23 23 C 1.50698 * 125.80802 * 179.72371 * 22 4 3 24 24 N 1.34662 * 108.39145 * 359.60714 * 22 4 3 25 25 H 0.96996 * 124.85314 * 180.17542 * 24 22 4 26 26 H 1.09002 * 109.46745 * 89.99985 * 1 2 3 27 27 H 1.08994 * 109.47528 * 210.00088 * 1 2 3 28 28 H 1.09004 * 109.47350 * 330.00567 * 1 2 3 29 29 H 1.08002 * 126.84058 * 0.03732 * 3 2 1 30 30 H 0.97002 * 120.00093 * 359.97438 * 7 5 4 31 31 H 1.09000 * 110.72463 * 88.05810 * 10 8 7 32 32 H 1.09003 * 110.72084 * 324.77832 * 10 8 7 33 33 H 1.09000 * 109.87870 * 262.77342 * 11 10 8 34 34 H 1.08994 * 110.00846 * 141.67886 * 11 10 8 35 35 H 0.97003 * 119.99939 * 354.92820 * 16 15 13 36 36 H 1.08998 * 110.35883 * 94.48293 * 21 12 11 37 37 H 1.09000 * 110.36735 * 216.80265 * 21 12 11 38 38 H 1.08996 * 109.47113 * 89.99515 * 23 22 4 39 39 H 1.09001 * 109.47157 * 210.00038 * 23 22 4 40 40 H 1.09008 * 109.46386 * 329.99645 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2893 1.0939 0.0000 4 6 3.6742 0.6106 -0.0006 5 6 4.8977 1.4302 -0.0014 6 8 5.9892 0.8935 -0.0023 7 7 4.8080 2.7749 -0.0010 8 6 6.0251 3.5903 -0.0023 9 1 6.8338 3.0822 0.5230 10 6 5.7572 4.9903 0.6104 11 6 6.8274 5.8737 -0.0649 12 7 7.2297 5.1989 -1.3076 13 6 8.1756 5.6485 -2.1898 14 1 8.5296 5.0011 -2.9784 15 6 8.6795 6.9364 -2.0704 16 7 9.7716 7.2787 -2.7204 17 14 7.8077 8.1838 -0.9872 18 1 8.4651 9.5077 -1.1289 19 1 6.3855 8.2905 -1.4012 20 1 7.8791 7.7447 0.4295 21 6 6.4415 3.9611 -1.4499 22 6 3.5998 -0.7551 -0.0065 23 6 4.7721 -1.7020 -0.0152 24 7 2.3007 -1.1099 -0.0005 25 1 1.9757 -2.0237 -0.0004 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3634 0.8901 0.5138 29 1 1.9629 2.1234 0.0006 30 1 3.9375 3.2029 -0.0006 31 1 5.8984 4.9718 1.6911 32 1 4.7553 5.3369 0.3571 33 1 7.6889 5.9814 0.5941 34 1 6.4111 6.8547 -0.2939 35 1 10.2653 6.6125 -3.2237 36 1 5.5607 4.1411 -2.0662 37 1 7.0532 3.1696 -1.8829 38 1 5.0587 -1.9348 1.0103 39 1 4.4936 -2.6203 -0.5321 40 1 5.6120 -1.2355 -0.5302 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015764218.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:43 Heat of formation + Delta-G solvation = 34.023420 kcal Electronic energy + Delta-G solvation = -21280.409917 eV Core-core repulsion = 18096.559693 eV Total energy + Delta-G solvation = -3183.850224 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.48742 -39.19301 -37.37723 -34.07726 -32.81592 -32.17682 -31.14360 -29.47718 -29.24031 -27.85345 -25.13659 -23.85292 -22.31915 -20.96517 -20.56642 -19.98159 -19.48121 -17.44340 -17.16442 -15.97435 -15.91349 -15.37913 -15.07349 -14.36231 -14.15314 -13.99936 -13.55692 -13.45244 -13.35195 -13.21335 -12.74119 -12.64985 -12.49935 -12.41282 -12.30628 -12.06419 -11.65765 -11.43187 -11.01186 -10.93651 -10.56727 -10.00241 -9.60576 -9.25867 -9.03169 -8.92625 -8.77815 -8.55940 -8.16412 -6.96362 -6.24333 -3.15405 1.71002 2.18929 2.86911 3.46252 3.52664 3.55845 3.68783 3.77336 4.53277 4.68230 4.69264 4.85510 4.99711 5.06888 5.08680 5.18118 5.25439 5.40017 5.42354 5.48926 5.50351 5.52648 5.60295 5.65739 5.85332 5.96659 6.01177 6.12462 6.19213 6.43163 6.58311 6.61301 6.65711 6.77694 6.81211 6.96238 7.23837 7.75073 7.85663 8.40647 8.57733 9.11770 9.62487 10.29461 11.26561 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032339 B = 0.003732 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.621247 B = 7501.861371 C = 7972.636322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.007 3.993 3 C -0.164 4.164 4 C -0.229 4.229 5 C 0.589 3.411 6 O -0.550 6.550 7 N -0.713 5.713 8 C 0.130 3.870 9 H 0.101 0.899 10 C -0.135 4.135 11 C 0.112 3.888 12 N -0.612 5.612 13 C -0.319 4.319 14 H 0.078 0.922 15 C -0.024 4.024 16 N -0.931 5.931 17 Si 1.073 2.927 18 H -0.302 1.302 19 H -0.299 1.299 20 H -0.286 1.286 21 C 0.129 3.871 22 C 0.105 3.895 23 C -0.095 4.095 24 N -0.551 5.551 25 H 0.413 0.587 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.144 0.856 30 H 0.397 0.603 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.031 0.969 35 H 0.261 0.739 36 H 0.025 0.975 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.691 -16.926 8.715 28.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 C -0.189 4.189 4 C -0.238 4.238 5 C 0.378 3.622 6 O -0.429 6.429 7 N -0.363 5.363 8 C 0.025 3.975 9 H 0.119 0.881 10 C -0.173 4.173 11 C -0.013 4.013 12 N -0.340 5.340 13 C -0.446 4.446 14 H 0.096 0.904 15 C -0.223 4.223 16 N -0.572 5.572 17 Si 0.907 3.093 18 H -0.231 1.231 19 H -0.228 1.228 20 H -0.213 1.213 21 C 0.002 3.998 22 C -0.013 4.013 23 C -0.152 4.152 24 N -0.148 5.148 25 H 0.249 0.751 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.162 0.838 30 H 0.231 0.769 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.042 0.958 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -19.861 -15.793 9.129 26.967 hybrid contribution -0.799 -1.759 -0.600 2.023 sum -20.661 -17.552 8.529 28.420 Atomic orbital electron populations 1.20320 0.87799 1.03260 1.02725 1.20187 0.93417 0.86029 1.10541 1.21805 0.90916 0.97755 1.08383 1.20176 0.92998 0.92268 1.18405 1.17334 0.87655 0.81741 0.75486 1.90742 1.28626 1.72353 1.51178 1.45699 1.09476 1.05757 1.75379 1.22274 0.86917 0.90123 0.98188 0.88143 1.22851 0.99754 0.94712 0.99995 1.21971 0.95441 0.94883 0.88982 1.44749 1.44469 1.22931 1.21839 1.20206 1.14912 0.99276 1.10186 0.90397 1.25872 0.98258 0.96582 1.01562 1.70885 1.15195 1.36932 1.34215 0.83804 0.74126 0.75654 0.75697 1.23064 1.22765 1.21329 1.21912 0.94628 0.89810 0.93481 1.20315 0.84769 0.94331 1.01861 1.20584 0.94809 0.96383 1.03443 1.41513 1.05355 1.08679 1.59253 0.75099 0.91001 0.91881 0.89989 0.83797 0.76879 0.90728 0.91140 0.93357 0.95219 0.92883 0.95761 0.93313 0.90485 0.92009 0.87781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.41 36.01 0.37 -0.06 16 2 C 0.01 0.06 7.13 -81.87 -0.58 -0.52 16 3 C -0.16 -1.75 10.45 -37.50 -0.39 -2.14 16 4 C -0.23 -3.04 6.29 -103.35 -0.65 -3.69 16 5 C 0.59 9.53 7.81 -12.59 -0.10 9.43 16 6 O -0.55 -10.61 14.45 5.26 0.08 -10.53 16 7 N -0.71 -10.72 5.19 -52.74 -0.27 -10.99 16 8 C 0.13 2.35 3.44 -65.67 -0.23 2.13 16 9 H 0.10 1.98 7.54 -51.93 -0.39 1.59 16 10 C -0.13 -2.27 6.60 -24.89 -0.16 -2.43 16 11 C 0.11 2.50 4.62 -3.06 -0.01 2.49 16 12 N -0.61 -15.76 3.32 -169.93 -0.56 -16.33 16 13 C -0.32 -9.55 10.56 -15.06 -0.16 -9.71 16 14 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 15 C -0.02 -0.73 5.50 -17.43 -0.10 -0.82 16 16 N -0.93 -30.13 13.70 55.49 0.76 -29.37 16 17 Si 1.07 27.45 24.53 -169.99 -4.17 23.28 16 18 H -0.30 -7.88 7.11 56.52 0.40 -7.47 16 19 H -0.30 -7.34 6.84 56.52 0.39 -6.95 16 20 H -0.29 -6.65 5.43 56.52 0.31 -6.34 16 21 C 0.13 2.83 6.93 -2.41 -0.02 2.81 16 22 C 0.10 1.18 7.17 -81.88 -0.59 0.59 16 23 C -0.09 -0.95 9.88 36.00 0.36 -0.59 16 24 N -0.55 -4.57 5.90 -5.42 -0.03 -4.61 16 25 H 0.41 2.05 8.96 -40.82 -0.37 1.68 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.14 1.26 7.70 -52.49 -0.40 0.85 16 30 H 0.40 4.84 7.69 -40.82 -0.31 4.52 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.07 1.03 8.00 -51.93 -0.42 0.62 16 33 H 0.05 1.12 6.78 -51.93 -0.35 0.77 16 34 H 0.03 0.70 3.81 -51.93 -0.20 0.50 16 35 H 0.26 8.38 8.73 -40.82 -0.36 8.02 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.10 1.33 6.47 -51.92 -0.34 0.99 16 LS Contribution 322.14 15.07 4.85 4.85 Total: -1.00 -36.46 322.14 -7.45 -43.91 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -5.84 Total: 2.30 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -2.26 Total: -2.53 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: -0.11 Total: -61.29 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.08 Total: -10.53 kcal Atomic # 14 Polarization: 27.45 SS G_CDS: -4.17 Total: 23.28 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -36.46 -7.45 -43.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015764218.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.932 kcal (2) G-P(sol) polarization free energy of solvation -36.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds