Wall clock time and date at job start Mon Mar 30 2020 01:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34479 * 125.56910 * 2 1 4 4 C 1.46683 * 106.33228 * 180.02562 * 3 2 1 5 5 C 1.47265 * 126.94646 * 179.97438 * 4 3 2 6 6 O 1.21625 * 120.00110 * 180.02562 * 5 4 3 7 7 N 1.34771 * 119.99953 * 0.02641 * 5 4 3 8 8 C 1.46501 * 120.00244 * 180.02562 * 7 5 4 9 9 H 1.09003 * 110.88347 * 328.87417 * 8 7 5 10 10 C 1.55154 * 111.00325 * 205.00052 * 8 7 5 11 11 C 1.54334 * 102.94217 * 206.41962 * 10 8 7 12 12 N 1.47020 * 107.26790 * 22.19151 * 11 10 8 13 13 C 1.36935 * 125.64918 * 181.02250 * 12 11 10 14 14 H 1.07993 * 120.00251 * 168.93127 * 13 12 11 15 15 C 1.38813 * 119.99633 * 348.93623 * 13 12 11 16 16 N 1.31619 * 119.99946 * 165.68026 * 15 13 12 17 17 Si 1.86792 * 120.00267 * 345.67982 * 15 13 12 18 18 H 1.48501 * 109.47512 * 185.28256 * 17 15 13 19 19 H 1.48508 * 109.47127 * 305.28168 * 17 15 13 20 20 H 1.48495 * 109.47289 * 65.27833 * 17 15 13 21 21 C 1.47431 * 108.70583 * 1.28516 * 12 11 10 22 22 C 1.36775 * 106.11728 * 0.24034 * 4 3 2 23 23 C 1.50698 * 125.80802 * 179.72371 * 22 4 3 24 24 N 1.34662 * 108.39145 * 359.60714 * 22 4 3 25 25 H 0.96996 * 124.85314 * 180.17542 * 24 22 4 26 26 H 1.09002 * 109.46745 * 89.99985 * 1 2 3 27 27 H 1.08994 * 109.47528 * 210.00088 * 1 2 3 28 28 H 1.09004 * 109.47350 * 330.00567 * 1 2 3 29 29 H 1.08002 * 126.84058 * 0.03732 * 3 2 1 30 30 H 0.97002 * 120.00093 * 359.97438 * 7 5 4 31 31 H 1.09000 * 110.72463 * 88.05810 * 10 8 7 32 32 H 1.09003 * 110.72084 * 324.77832 * 10 8 7 33 33 H 1.09000 * 109.87870 * 262.77342 * 11 10 8 34 34 H 1.08994 * 110.00846 * 141.67886 * 11 10 8 35 35 H 0.97003 * 119.99939 * 354.92820 * 16 15 13 36 36 H 1.08998 * 110.35883 * 94.48293 * 21 12 11 37 37 H 1.09000 * 110.36735 * 216.80265 * 21 12 11 38 38 H 1.08996 * 109.47113 * 89.99515 * 23 22 4 39 39 H 1.09001 * 109.47157 * 210.00038 * 23 22 4 40 40 H 1.09008 * 109.46386 * 329.99645 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2893 1.0939 0.0000 4 6 3.6742 0.6106 -0.0006 5 6 4.8977 1.4302 -0.0014 6 8 5.9892 0.8935 -0.0023 7 7 4.8080 2.7749 -0.0010 8 6 6.0251 3.5903 -0.0023 9 1 6.8338 3.0822 0.5230 10 6 5.7572 4.9903 0.6104 11 6 6.8274 5.8737 -0.0649 12 7 7.2297 5.1989 -1.3076 13 6 8.1756 5.6485 -2.1898 14 1 8.5296 5.0011 -2.9784 15 6 8.6795 6.9364 -2.0704 16 7 9.7716 7.2787 -2.7204 17 14 7.8077 8.1838 -0.9872 18 1 8.4651 9.5077 -1.1289 19 1 6.3855 8.2905 -1.4012 20 1 7.8791 7.7447 0.4295 21 6 6.4415 3.9611 -1.4499 22 6 3.5998 -0.7551 -0.0065 23 6 4.7721 -1.7020 -0.0152 24 7 2.3007 -1.1099 -0.0005 25 1 1.9757 -2.0237 -0.0004 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3634 0.8901 0.5138 29 1 1.9629 2.1234 0.0006 30 1 3.9375 3.2029 -0.0006 31 1 5.8984 4.9718 1.6911 32 1 4.7553 5.3369 0.3571 33 1 7.6889 5.9814 0.5941 34 1 6.4111 6.8547 -0.2939 35 1 10.2653 6.6125 -3.2237 36 1 5.5607 4.1411 -2.0662 37 1 7.0532 3.1696 -1.8829 38 1 5.0587 -1.9348 1.0103 39 1 4.4936 -2.6203 -0.5321 40 1 5.6120 -1.2355 -0.5302 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015764218.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:43 Heat of formation + Delta-G solvation = 6.140692 kcal Electronic energy + Delta-G solvation = -21281.619003 eV Core-core repulsion = 18096.559693 eV Total energy + Delta-G solvation = -3185.059310 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.27973 -40.54800 -38.98673 -35.69612 -34.16612 -33.49495 -32.18783 -31.06832 -30.02568 -29.47007 -26.30823 -25.44340 -23.46001 -22.68759 -21.77835 -21.19395 -20.64197 -19.58596 -18.08828 -17.48260 -17.11431 -16.67255 -16.22438 -15.92140 -15.58232 -15.21449 -14.93947 -14.61183 -14.31187 -14.19329 -14.04973 -13.98227 -13.87962 -13.44946 -13.19676 -13.05760 -13.01492 -12.90405 -12.48587 -12.39248 -12.28551 -11.74969 -11.41986 -11.07031 -10.89208 -10.70118 -10.14930 -9.74008 -9.12219 -8.94296 -8.68930 -5.51703 0.73889 1.41994 1.45936 1.52916 1.75274 2.05235 2.44713 2.56025 2.57031 3.11801 3.34245 3.61003 3.86451 3.87396 3.98326 4.09150 4.21547 4.25098 4.33608 4.50193 4.52191 4.67165 4.68594 4.70266 4.81719 4.85633 4.88617 4.90275 5.03517 5.08677 5.17010 5.18964 5.35708 5.46255 5.59634 5.83220 6.00976 6.06442 6.60875 6.73128 6.79688 7.36544 7.40582 8.04995 8.83688 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032339 B = 0.003732 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.621247 B = 7501.861371 C = 7972.636322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.018 3.982 3 C -0.182 4.182 4 C -0.264 4.264 5 C 0.583 3.417 6 O -0.592 6.592 7 N -0.700 5.700 8 C 0.147 3.853 9 H 0.080 0.920 10 C -0.115 4.115 11 C 0.099 3.901 12 N -0.632 5.632 13 C -0.318 4.318 14 H 0.037 0.963 15 C -0.081 4.081 16 N -0.963 5.963 17 Si 1.115 2.885 18 H -0.311 1.311 19 H -0.277 1.277 20 H -0.245 1.245 21 C 0.127 3.873 22 C 0.100 3.900 23 C -0.092 4.092 24 N -0.536 5.536 25 H 0.430 0.570 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.161 0.839 30 H 0.414 0.586 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.040 0.960 34 H 0.036 0.964 35 H 0.245 0.755 36 H 0.034 0.966 37 H 0.016 0.984 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.966 -17.358 11.042 32.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 C -0.205 4.205 4 C -0.274 4.274 5 C 0.374 3.626 6 O -0.475 6.475 7 N -0.351 5.351 8 C 0.040 3.960 9 H 0.098 0.902 10 C -0.153 4.153 11 C -0.025 4.025 12 N -0.361 5.361 13 C -0.447 4.447 14 H 0.055 0.945 15 C -0.273 4.273 16 N -0.607 5.607 17 Si 0.941 3.059 18 H -0.241 1.241 19 H -0.205 1.205 20 H -0.170 1.170 21 C 0.000 4.000 22 C -0.019 4.019 23 C -0.150 4.150 24 N -0.134 5.134 25 H 0.270 0.730 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.111 0.889 29 H 0.178 0.822 30 H 0.252 0.748 31 H 0.127 0.873 32 H 0.122 0.878 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.035 0.965 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -24.219 -16.283 11.475 31.358 hybrid contribution 0.520 -1.805 -1.426 2.358 sum -23.699 -18.087 10.049 31.461 Atomic orbital electron populations 1.20445 0.84944 1.04739 1.03757 1.20749 0.95002 0.85348 1.08010 1.22049 0.89667 0.99345 1.09465 1.20128 0.92981 0.93063 1.21275 1.17874 0.88203 0.82058 0.74446 1.90721 1.30505 1.73099 1.53152 1.45474 1.09202 1.05345 1.75066 1.21824 0.87773 0.91459 0.94934 0.90181 1.22831 0.99570 0.91643 1.01295 1.22209 0.96852 0.96095 0.87391 1.44785 1.44309 1.24391 1.22590 1.20072 1.15616 0.98927 1.10054 0.94500 1.27389 0.98129 0.98931 1.02822 1.71003 1.16863 1.36675 1.36130 0.83362 0.73767 0.72448 0.76327 1.24071 1.20475 1.16967 1.22009 0.93831 0.87617 0.96520 1.20430 0.86161 0.94009 1.01335 1.20526 0.93557 0.97151 1.03731 1.41518 1.04240 1.09833 1.57792 0.72997 0.90064 0.90048 0.88935 0.82186 0.74817 0.87308 0.87767 0.94243 0.94652 0.94583 0.94821 0.96522 0.89956 0.89014 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.41 71.24 0.74 0.24 16 2 C 0.02 0.26 7.13 40.98 0.29 0.55 16 3 C -0.18 -3.39 10.45 23.62 0.25 -3.14 16 4 C -0.26 -6.74 6.29 -19.04 -0.12 -6.86 16 5 C 0.58 18.81 7.81 86.62 0.68 19.49 16 6 O -0.59 -23.75 14.45 -4.11 -0.06 -23.81 16 7 N -0.70 -19.99 5.19 -439.02 -2.28 -22.27 16 8 C 0.15 5.13 3.44 46.46 0.16 5.29 16 9 H 0.08 3.17 7.54 -2.39 -0.02 3.15 16 10 C -0.12 -3.43 6.60 31.79 0.21 -3.22 16 11 C 0.10 4.15 4.62 86.73 0.40 4.55 16 12 N -0.63 -32.80 3.32 -691.55 -2.30 -35.10 16 13 C -0.32 -19.83 10.56 84.03 0.89 -18.94 16 14 H 0.04 2.52 8.06 -2.91 -0.02 2.49 16 15 C -0.08 -5.03 5.50 84.86 0.47 -4.57 16 16 N -0.96 -64.69 13.70 21.65 0.30 -64.39 16 17 Si 1.11 54.51 24.53 68.60 1.68 56.19 16 18 H -0.31 -15.63 7.11 99.48 0.71 -14.92 16 19 H -0.28 -12.54 6.84 99.48 0.68 -11.86 16 20 H -0.24 -10.36 5.43 99.48 0.54 -9.82 16 21 C 0.13 5.65 6.93 86.93 0.60 6.25 16 22 C 0.10 2.11 7.17 41.78 0.30 2.41 16 23 C -0.09 -1.80 9.88 71.24 0.70 -1.09 16 24 N -0.54 -7.33 5.90 -171.07 -1.01 -8.34 16 25 H 0.43 2.75 8.96 -92.71 -0.83 1.92 16 26 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 29 H 0.16 2.28 7.70 -2.91 -0.02 2.25 16 30 H 0.41 8.89 7.69 -92.71 -0.71 8.17 16 31 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.10 2.47 8.00 -2.39 -0.02 2.45 16 33 H 0.04 1.73 6.78 -2.39 -0.02 1.71 16 34 H 0.04 1.50 3.81 -2.39 -0.01 1.49 16 35 H 0.25 16.67 8.73 -92.71 -0.81 15.86 16 36 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.07 1.90 6.47 -2.38 -0.02 1.89 16 Total: -1.00 -84.70 322.14 1.20 -83.50 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -0.71 Total: 13.24 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 5.57 Total: 0.96 kcal Atomic # 7 Polarization: -124.80 SS G_CDS: -5.29 Total: -130.09 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.06 Total: -23.81 kcal Atomic # 14 Polarization: 54.51 SS G_CDS: 1.68 Total: 56.19 kcal Total: -84.70 1.20 -83.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015764218.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.645 kcal (2) G-P(sol) polarization free energy of solvation -84.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds