Wall clock time and date at job start Mon Mar 30 2020 01:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.34486 * 125.57226 * 2 1 4 4 C 1.46685 * 106.32998 * 179.97438 * 3 2 1 5 5 C 1.47267 * 126.94204 * 180.02562 * 4 3 2 6 6 O 1.21627 * 120.00092 * 180.02562 * 5 4 3 7 7 N 1.34777 * 119.99699 * 0.02588 * 5 4 3 8 8 C 1.46503 * 119.99520 * 179.97438 * 7 5 4 9 9 H 1.08997 * 110.78015 * 36.78986 * 8 7 5 10 10 C 1.55160 * 110.71803 * 160.02443 * 8 7 5 11 11 C 1.54910 * 101.58122 * 82.86103 * 10 8 7 12 12 N 1.47425 * 104.83231 * 37.00939 * 11 10 8 13 13 C 1.36933 * 125.64542 * 156.13438 * 12 11 10 14 14 H 1.08005 * 119.99541 * 179.69129 * 13 12 11 15 15 C 1.38813 * 120.00564 * 359.69503 * 13 12 11 16 16 N 1.31616 * 119.99514 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00305 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47103 * 60.00082 * 17 15 13 19 19 H 1.48502 * 109.47327 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47083 * 299.99999 * 17 15 13 21 21 C 1.47026 * 108.70074 * 335.87083 * 12 11 10 22 22 C 1.36770 * 106.11828 * 0.26366 * 4 3 2 23 23 C 1.50698 * 125.80332 * 179.71545 * 22 4 3 24 24 N 1.34666 * 108.39157 * 359.57553 * 22 4 3 25 25 H 0.97006 * 124.84388 * 180.15405 * 24 22 4 26 26 H 1.08996 * 109.47128 * 89.99498 * 1 2 3 27 27 H 1.08998 * 109.47395 * 210.00028 * 1 2 3 28 28 H 1.09007 * 109.46218 * 329.99568 * 1 2 3 29 29 H 1.08000 * 126.83296 * 0.02562 * 3 2 1 30 30 H 0.96998 * 120.00381 * 359.97438 * 7 5 4 31 31 H 1.08991 * 111.00600 * 200.93720 * 10 8 7 32 32 H 1.09004 * 111.00084 * 324.75166 * 10 8 7 33 33 H 1.09001 * 110.36852 * 278.17238 * 11 10 8 34 34 H 1.08998 * 110.36449 * 155.84885 * 11 10 8 35 35 H 0.97002 * 119.99999 * 179.97438 * 16 15 13 36 36 H 1.09004 * 109.87531 * 120.47707 * 21 12 11 37 37 H 1.09000 * 109.87938 * 241.63960 * 21 12 11 38 38 H 1.08997 * 109.47046 * 90.00271 * 23 22 4 39 39 H 1.09004 * 109.47114 * 209.99948 * 23 22 4 40 40 H 1.09002 * 109.46972 * 329.99861 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2894 1.0939 0.0000 4 6 3.6743 0.6105 0.0006 5 6 4.8979 1.4300 0.0014 6 8 5.9893 0.8934 0.0014 7 7 4.8081 2.7748 0.0021 8 6 6.0253 3.5901 0.0034 9 1 6.8012 3.1276 -0.6066 10 6 5.7227 5.0291 -0.4918 11 6 5.1934 5.6980 0.8013 12 7 6.0098 5.1224 1.8855 13 6 6.2425 5.7030 3.1036 14 1 6.8537 5.1959 3.8356 15 6 5.6929 6.9433 3.3978 16 7 4.9485 7.5615 2.5056 17 14 6.0097 7.7349 5.0597 18 1 7.4697 7.9373 5.2414 19 1 5.3170 9.0469 5.1233 20 1 5.4950 6.8501 6.1356 21 6 6.5276 3.8190 1.4445 22 6 3.5998 -0.7552 -0.0051 23 6 4.7722 -1.7021 -0.0128 24 7 2.3007 -1.1098 0.0005 25 1 1.9757 -2.0238 0.0003 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3632 0.8900 0.5140 29 1 1.9630 2.1234 0.0004 30 1 3.9377 3.2028 0.0017 31 1 6.6301 5.5205 -0.8426 32 1 4.9590 5.0221 -1.2695 33 1 4.1409 5.4565 0.9499 34 1 5.3326 6.7781 0.7539 35 1 4.5641 8.4280 2.7112 36 1 7.6175 3.8286 1.4601 37 1 6.1524 3.0309 2.0974 38 1 5.0579 -1.9348 1.0129 39 1 4.4940 -2.6205 -0.5298 40 1 5.6124 -1.2357 -0.5273 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015764219.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:46 Heat of formation + Delta-G solvation = 25.988082 kcal Electronic energy + Delta-G solvation = -21489.437225 eV Core-core repulsion = 18305.238562 eV Total energy + Delta-G solvation = -3184.198663 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.31714 -39.01310 -36.95535 -33.70003 -32.65881 -31.87998 -30.80218 -29.28351 -28.97155 -27.13917 -25.00282 -24.30744 -22.33909 -20.49332 -20.10849 -19.58696 -19.29526 -17.03797 -16.81347 -15.70992 -15.56410 -15.19685 -14.60371 -14.15604 -13.90501 -13.70495 -13.66002 -13.32321 -13.19094 -12.90082 -12.55108 -12.38375 -12.33447 -12.16875 -11.90064 -11.53504 -11.46771 -10.99242 -10.81060 -10.63365 -10.27916 -10.09772 -9.80068 -9.52159 -9.37596 -8.84639 -8.61429 -8.42694 -7.98984 -6.75949 -5.59615 -2.99992 1.87601 2.37300 3.03423 3.45062 3.48747 3.50355 3.80813 3.90774 4.55327 4.70523 4.83919 5.01067 5.18710 5.25465 5.33383 5.48992 5.52232 5.56231 5.61097 5.62713 5.68378 5.84965 5.87837 5.98023 5.99238 6.24553 6.39448 6.50120 6.59526 6.73171 6.79284 6.84806 6.95134 7.24725 7.40187 7.51820 7.68861 7.88682 8.11509 8.41731 8.78568 9.28792 9.89622 10.55006 11.44569 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021471 B = 0.004174 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.759384 B = 6706.381993 C = 7142.151066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.005 3.995 3 C -0.161 4.161 4 C -0.226 4.226 5 C 0.589 3.411 6 O -0.559 6.559 7 N -0.705 5.705 8 C 0.134 3.866 9 H 0.086 0.914 10 C -0.153 4.153 11 C 0.152 3.848 12 N -0.603 5.603 13 C -0.218 4.218 14 H 0.076 0.924 15 C -0.013 4.013 16 N -0.925 5.925 17 Si 0.914 3.086 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.286 1.286 21 C 0.128 3.872 22 C 0.100 3.900 23 C -0.092 4.092 24 N -0.552 5.552 25 H 0.411 0.589 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.145 0.855 30 H 0.399 0.601 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.010 0.990 34 H 0.108 0.892 35 H 0.251 0.749 36 H 0.030 0.970 37 H 0.026 0.974 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.272 -16.190 -8.484 20.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 C -0.186 4.186 4 C -0.236 4.236 5 C 0.378 3.622 6 O -0.440 6.440 7 N -0.355 5.355 8 C 0.029 3.971 9 H 0.104 0.896 10 C -0.192 4.192 11 C 0.027 3.973 12 N -0.330 5.330 13 C -0.347 4.347 14 H 0.094 0.906 15 C -0.208 4.208 16 N -0.574 5.574 17 Si 0.745 3.255 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.213 1.213 21 C 0.001 3.999 22 C -0.017 4.017 23 C -0.150 4.150 24 N -0.149 5.149 25 H 0.248 0.752 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.163 0.837 30 H 0.234 0.766 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.028 0.972 34 H 0.125 0.875 35 H 0.062 0.938 36 H 0.048 0.952 37 H 0.044 0.956 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.605 -16.446 -8.359 19.955 hybrid contribution -0.601 0.207 1.004 1.189 sum -8.206 -16.239 -7.354 19.625 Atomic orbital electron populations 1.20314 0.87845 1.03325 1.02556 1.20173 0.93386 0.86002 1.10787 1.21863 0.90978 0.97868 1.07844 1.20217 0.93143 0.92242 1.17967 1.17305 0.87553 0.81823 0.75532 1.90694 1.28635 1.72537 1.52092 1.45748 1.09913 1.05436 1.74375 1.21930 0.86501 0.91176 0.97520 0.89577 1.23331 1.01527 0.94271 1.00120 1.21939 0.91924 1.00834 0.82571 1.44512 1.57766 1.16532 1.14165 1.19058 1.25644 0.99798 0.90158 0.90629 1.24750 1.00039 0.97526 0.98438 1.69774 1.38174 1.16149 1.33297 0.86152 0.77632 0.78455 0.83274 1.21201 1.21614 1.21328 1.21695 0.96468 0.89213 0.92554 1.20276 0.84735 0.94307 1.02389 1.20552 0.94792 0.96206 1.03420 1.41486 1.05349 1.08575 1.59467 0.75235 0.91128 0.91953 0.89904 0.83710 0.76648 0.90703 0.91784 0.97226 0.87470 0.93803 0.95237 0.95610 0.90546 0.92205 0.87916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.41 36.01 0.37 -0.22 16 2 C 0.01 0.06 7.13 -81.86 -0.58 -0.53 16 3 C -0.16 -2.13 10.45 -37.50 -0.39 -2.52 16 4 C -0.23 -3.47 6.29 -103.35 -0.65 -4.12 16 5 C 0.59 10.64 7.81 -12.59 -0.10 10.54 16 6 O -0.56 -11.30 14.55 5.25 0.08 -11.22 16 7 N -0.71 -12.53 5.11 -53.15 -0.27 -12.80 16 8 C 0.13 2.58 3.25 -66.10 -0.21 2.37 16 9 H 0.09 1.62 7.70 -51.93 -0.40 1.22 16 10 C -0.15 -2.91 6.64 -24.58 -0.16 -3.08 16 11 C 0.15 3.68 5.87 -2.53 -0.01 3.66 16 12 N -0.60 -15.94 3.39 -170.07 -0.58 -16.52 16 13 C -0.22 -6.27 10.27 -15.06 -0.15 -6.42 16 14 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 15 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 16 N -0.92 -27.06 10.09 55.49 0.56 -26.50 16 17 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 21 C 0.13 2.94 6.98 -3.07 -0.02 2.91 16 22 C 0.10 1.28 7.18 -81.88 -0.59 0.69 16 23 C -0.09 -1.02 9.88 36.00 0.36 -0.66 16 24 N -0.55 -5.47 5.90 -5.42 -0.03 -5.50 16 25 H 0.41 2.62 8.96 -40.82 -0.37 2.25 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.15 1.75 7.70 -52.49 -0.40 1.34 16 30 H 0.40 6.58 7.74 -40.82 -0.32 6.27 16 31 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.11 2.91 5.87 -51.93 -0.30 2.61 16 35 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.03 0.63 8.04 -51.93 -0.42 0.22 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 1.35 6.47 -51.93 -0.34 1.02 16 LS Contribution 329.45 15.07 4.96 4.96 Total: -1.00 -33.69 329.45 -8.44 -42.14 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.89 Total: 5.80 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -2.25 Total: 2.19 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: -0.32 Total: -61.33 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.08 Total: -11.22 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.69 -8.44 -42.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015764219.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.125 kcal (2) G-P(sol) polarization free energy of solvation -33.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds