Wall clock time and date at job start Mon Mar 30 2020 01:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39840 * 126.45671 * 2 1 4 4 C 1.35455 * 107.86196 * 180.26671 * 3 2 1 5 5 N 1.35527 * 108.87258 * 359.74037 * 4 3 2 6 6 C 1.46506 * 125.67636 * 179.97438 * 5 4 3 7 7 C 1.37649 * 108.64667 * 0.02562 * 5 4 3 8 8 C 1.46676 * 126.23500 * 179.97438 * 7 5 4 9 9 O 1.21698 * 120.00047 * 99.55042 * 8 7 5 10 10 N 1.34774 * 119.99911 * 279.54800 * 8 7 5 11 11 C 1.47020 * 125.65308 * 354.83423 * 10 8 7 12 12 C 1.54321 * 107.27499 * 178.90439 * 11 10 8 13 13 C 1.55153 * 102.94083 * 337.81328 * 12 11 10 14 14 H 1.09008 * 111.00416 * 277.42206 * 13 12 11 15 15 N 1.46498 * 111.00580 * 153.57776 * 13 12 11 16 16 C 1.36938 * 120.00251 * 86.44635 * 15 13 12 17 17 H 1.07999 * 120.00360 * 0.02562 * 16 15 13 18 18 C 1.38813 * 119.99902 * 180.02562 * 16 15 13 19 19 N 1.31622 * 120.00119 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99978 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47133 * 60.00307 * 20 18 16 22 22 H 1.48504 * 109.47160 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.46981 * 300.00088 * 20 18 16 24 24 C 1.47431 * 125.64830 * 174.79891 * 10 8 7 25 25 H 1.09002 * 109.47051 * 270.18107 * 1 2 3 26 26 H 1.09003 * 109.47488 * 30.17733 * 1 2 3 27 27 H 1.09000 * 109.47344 * 150.17577 * 1 2 3 28 28 H 1.07996 * 126.06865 * 0.02562 * 3 2 1 29 29 H 1.08004 * 125.56263 * 179.72711 * 4 3 2 30 30 H 1.09001 * 109.47376 * 274.97944 * 6 5 4 31 31 H 1.09001 * 109.47265 * 34.98555 * 6 5 4 32 32 H 1.09011 * 109.46811 * 154.98616 * 6 5 4 33 33 H 1.09007 * 109.87955 * 59.49004 * 11 10 8 34 34 H 1.08998 * 110.01064 * 298.40110 * 11 10 8 35 35 H 1.09004 * 110.71926 * 96.17160 * 12 11 10 36 36 H 1.08996 * 110.72430 * 219.44514 * 12 11 10 37 37 H 0.97004 * 120.00033 * 266.45479 * 15 13 12 38 38 H 0.97000 * 120.00070 * 179.97438 * 19 18 16 39 39 H 1.09004 * 110.36586 * 323.00087 * 24 10 8 40 40 H 1.09000 * 110.36911 * 85.21105 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6217 0.6928 -0.0060 5 7 3.6283 -0.6624 -0.0040 6 6 4.8225 -1.5111 -0.0094 7 6 2.3262 -1.1089 0.0029 8 6 1.8898 -2.5092 0.0066 9 8 1.5469 -3.0370 1.0482 10 7 1.8685 -3.2114 -1.1436 11 6 2.1516 -2.6726 -2.4819 12 6 2.0350 -3.8429 -3.4811 13 6 2.2483 -5.0896 -2.5825 14 1 3.3098 -5.2787 -2.4221 15 7 1.5877 -6.2667 -3.1520 16 6 2.2415 -7.0396 -4.0741 17 1 3.2442 -6.7818 -4.3813 18 6 1.6153 -8.1546 -4.6141 19 7 0.3930 -8.4686 -4.2402 20 14 2.5073 -9.2094 -5.8715 21 1 3.7507 -9.7531 -5.2687 22 1 1.6282 -10.3307 -6.2900 23 1 2.8519 -8.3827 -7.0559 24 6 1.5583 -4.6473 -1.2680 25 1 -0.3633 0.0032 1.0277 26 1 -0.3634 0.8884 -0.5166 27 1 -0.3634 -0.8915 -0.5111 28 1 2.0136 2.1549 0.0004 29 1 4.4972 1.3253 -0.0117 30 1 5.1646 -1.6504 -1.0349 31 1 5.6097 -1.0343 0.5747 32 1 4.5816 -2.4801 0.4280 33 1 3.1603 -2.2605 -2.5099 34 1 1.4275 -1.8975 -2.7327 35 1 1.0459 -3.8621 -3.9388 36 1 2.8122 -3.7788 -4.2426 37 1 0.6871 -6.4985 -2.8760 38 1 -0.0447 -9.2476 -4.6178 39 1 1.9669 -5.1985 -0.4210 40 1 0.4808 -4.7984 -1.3337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018773017.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:35 Heat of formation + Delta-G solvation = 31.611960 kcal Electronic energy + Delta-G solvation = -21634.002360 eV Core-core repulsion = 18450.047567 eV Total energy + Delta-G solvation = -3183.954793 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.45695 -39.35841 -37.21315 -34.16644 -33.79881 -31.65074 -30.34210 -29.58897 -28.60421 -27.42857 -25.33618 -23.97241 -23.00966 -21.29589 -20.27519 -20.07577 -18.47890 -17.48483 -17.30184 -16.31076 -15.84429 -15.31886 -14.98803 -14.56624 -14.22264 -13.62688 -13.42927 -13.32848 -13.30301 -13.17622 -12.87345 -12.72369 -12.51052 -12.11884 -12.08468 -11.96256 -11.63066 -11.54536 -11.20496 -10.87352 -10.74027 -10.36668 -10.13778 -9.97212 -9.78184 -8.99682 -8.62790 -8.49168 -8.11850 -7.09372 -5.85796 -3.16925 1.83673 2.29087 2.78028 2.93929 3.28726 3.38724 3.43701 3.44659 4.51091 4.55552 4.56052 4.89987 4.92977 5.02222 5.15344 5.20647 5.26942 5.28280 5.34120 5.51550 5.60430 5.64275 5.69663 5.74369 5.92594 5.98541 6.00583 6.10139 6.17931 6.28451 6.33925 6.48802 6.54688 6.81184 6.85724 6.97501 7.15409 7.60547 7.61272 8.18320 8.31392 9.42981 9.96410 10.31446 11.36259 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032160 B = 0.003801 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.434922 B = 7364.452881 C = 7623.059292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.117 4.117 3 C -0.200 4.200 4 C 0.001 3.999 5 N -0.424 5.424 6 C 0.069 3.931 7 C -0.031 4.031 8 C 0.602 3.398 9 O -0.532 6.532 10 N -0.603 5.603 11 C 0.107 3.893 12 C -0.154 4.154 13 C 0.173 3.827 14 H 0.062 0.938 15 N -0.714 5.714 16 C -0.247 4.247 17 H 0.072 0.928 18 C -0.008 4.008 19 N -0.930 5.930 20 Si 0.909 3.091 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.099 3.901 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.140 0.860 29 H 0.165 0.835 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.387 0.613 38 H 0.258 0.742 39 H 0.076 0.924 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.628 18.809 6.276 20.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.124 4.124 3 C -0.225 4.225 4 C -0.132 4.132 5 N -0.099 5.099 6 C -0.073 4.073 7 C -0.144 4.144 8 C 0.388 3.612 9 O -0.407 6.407 10 N -0.336 5.336 11 C -0.016 4.016 12 C -0.196 4.196 13 C 0.061 3.939 14 H 0.080 0.920 15 N -0.355 5.355 16 C -0.378 4.378 17 H 0.089 0.911 18 C -0.205 4.205 19 N -0.577 5.577 20 Si 0.740 3.260 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C -0.024 4.024 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.157 0.843 29 H 0.183 0.817 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.221 0.779 38 H 0.068 0.932 39 H 0.095 0.905 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.858 18.166 6.781 20.568 hybrid contribution 0.295 -0.539 -0.737 0.960 sum 7.153 17.627 6.044 19.960 Atomic orbital electron populations 1.20183 0.89835 1.02071 1.01955 1.19740 0.95301 0.90924 1.06474 1.20639 0.91703 0.98337 1.11811 1.21815 0.99332 0.82410 1.09616 1.43800 1.05004 1.06276 1.54821 1.22135 0.85889 0.95547 1.03709 1.20023 0.83967 0.93387 1.17027 1.16734 0.78385 0.83518 0.82556 1.90841 1.48573 1.70027 1.31299 1.48464 1.67636 1.10980 1.06557 1.22050 0.99997 0.97627 0.81975 1.23431 1.03219 0.95177 0.97738 1.21273 0.96059 0.87353 0.89179 0.91997 1.42247 1.17274 1.26842 1.49139 1.19146 0.98208 1.04864 1.15560 0.91054 1.24771 0.96520 0.98716 1.00483 1.69651 1.12714 1.28745 1.46565 0.86245 0.78569 0.79972 0.81225 1.21166 1.21608 1.21164 1.22594 1.00937 0.79021 0.99853 0.91581 0.91539 0.92276 0.84258 0.81725 0.90271 0.89454 0.89729 0.92487 0.91772 0.90369 0.90712 0.77865 0.93240 0.90509 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.20 36.00 0.37 -0.63 16 2 C -0.12 -1.56 6.21 -104.16 -0.65 -2.21 16 3 C -0.20 -2.22 10.76 -39.98 -0.43 -2.65 16 4 C 0.00 0.01 11.38 -16.91 -0.19 -0.18 16 5 N -0.42 -4.95 3.16 -120.23 -0.38 -5.33 16 6 C 0.07 0.60 10.98 59.85 0.66 1.26 16 7 C -0.03 -0.45 5.82 -81.98 -0.48 -0.92 16 8 C 0.60 10.16 6.60 -12.86 -0.08 10.07 16 9 O -0.53 -10.79 17.41 5.19 0.09 -10.70 16 10 N -0.60 -9.62 3.33 -172.06 -0.57 -10.20 16 11 C 0.11 1.50 6.47 -3.07 -0.02 1.48 16 12 C -0.15 -2.50 6.65 -24.90 -0.17 -2.67 16 13 C 0.17 3.27 3.68 -65.79 -0.24 3.03 16 14 H 0.06 1.17 8.13 -51.92 -0.42 0.75 16 15 N -0.71 -17.12 5.28 -51.35 -0.27 -17.39 16 16 C -0.25 -6.55 9.98 -15.06 -0.15 -6.70 16 17 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 18 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 19 N -0.93 -27.32 13.06 55.49 0.72 -26.59 16 20 Si 0.91 21.68 29.55 -169.99 -5.02 16.65 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 24 C 0.10 1.74 6.51 -2.53 -0.02 1.73 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.76 7.96 -51.93 -0.41 0.35 16 28 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.17 1.07 8.06 -52.48 -0.42 0.64 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.87 7.68 -51.92 -0.40 0.47 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.39 9.92 7.71 -40.82 -0.31 9.61 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.08 1.40 8.09 -51.93 -0.42 0.98 16 40 H 0.07 1.32 8.00 -51.93 -0.42 0.91 16 LS Contribution 338.81 15.07 5.11 5.11 Total: -1.00 -32.14 338.81 -7.98 -40.12 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -6.16 Total: 7.05 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -1.50 Total: 1.29 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: -0.50 Total: -59.51 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.14 -7.98 -40.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018773017.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.729 kcal (2) G-P(sol) polarization free energy of solvation -32.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds