Wall clock time and date at job start Mon Mar 30 2020 01:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39840 * 126.45671 * 2 1 4 4 C 1.35455 * 107.86196 * 180.26671 * 3 2 1 5 5 N 1.35527 * 108.87258 * 359.74037 * 4 3 2 6 6 C 1.46506 * 125.67636 * 179.97438 * 5 4 3 7 7 C 1.37649 * 108.64667 * 0.02562 * 5 4 3 8 8 C 1.46676 * 126.23500 * 179.97438 * 7 5 4 9 9 O 1.21698 * 120.00047 * 99.55042 * 8 7 5 10 10 N 1.34774 * 119.99911 * 279.54800 * 8 7 5 11 11 C 1.47020 * 125.65308 * 354.83423 * 10 8 7 12 12 C 1.54321 * 107.27499 * 178.90439 * 11 10 8 13 13 C 1.55153 * 102.94083 * 337.81328 * 12 11 10 14 14 H 1.09008 * 111.00416 * 277.42206 * 13 12 11 15 15 N 1.46498 * 111.00580 * 153.57776 * 13 12 11 16 16 C 1.36938 * 120.00251 * 86.44635 * 15 13 12 17 17 H 1.07999 * 120.00360 * 0.02562 * 16 15 13 18 18 C 1.38813 * 119.99902 * 180.02562 * 16 15 13 19 19 N 1.31622 * 120.00119 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99978 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47133 * 60.00307 * 20 18 16 22 22 H 1.48504 * 109.47160 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.46981 * 300.00088 * 20 18 16 24 24 C 1.47431 * 125.64830 * 174.79891 * 10 8 7 25 25 H 1.09002 * 109.47051 * 270.18107 * 1 2 3 26 26 H 1.09003 * 109.47488 * 30.17733 * 1 2 3 27 27 H 1.09000 * 109.47344 * 150.17577 * 1 2 3 28 28 H 1.07996 * 126.06865 * 0.02562 * 3 2 1 29 29 H 1.08004 * 125.56263 * 179.72711 * 4 3 2 30 30 H 1.09001 * 109.47376 * 274.97944 * 6 5 4 31 31 H 1.09001 * 109.47265 * 34.98555 * 6 5 4 32 32 H 1.09011 * 109.46811 * 154.98616 * 6 5 4 33 33 H 1.09007 * 109.87955 * 59.49004 * 11 10 8 34 34 H 1.08998 * 110.01064 * 298.40110 * 11 10 8 35 35 H 1.09004 * 110.71926 * 96.17160 * 12 11 10 36 36 H 1.08996 * 110.72430 * 219.44514 * 12 11 10 37 37 H 0.97004 * 120.00033 * 266.45479 * 15 13 12 38 38 H 0.97000 * 120.00070 * 179.97438 * 19 18 16 39 39 H 1.09004 * 110.36586 * 323.00087 * 24 10 8 40 40 H 1.09000 * 110.36911 * 85.21105 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6217 0.6928 -0.0060 5 7 3.6283 -0.6624 -0.0040 6 6 4.8225 -1.5111 -0.0094 7 6 2.3262 -1.1089 0.0029 8 6 1.8898 -2.5092 0.0066 9 8 1.5469 -3.0370 1.0482 10 7 1.8685 -3.2114 -1.1436 11 6 2.1516 -2.6726 -2.4819 12 6 2.0350 -3.8429 -3.4811 13 6 2.2483 -5.0896 -2.5825 14 1 3.3098 -5.2787 -2.4221 15 7 1.5877 -6.2667 -3.1520 16 6 2.2415 -7.0396 -4.0741 17 1 3.2442 -6.7818 -4.3813 18 6 1.6153 -8.1546 -4.6141 19 7 0.3930 -8.4686 -4.2402 20 14 2.5073 -9.2094 -5.8715 21 1 3.7507 -9.7531 -5.2687 22 1 1.6282 -10.3307 -6.2900 23 1 2.8519 -8.3827 -7.0559 24 6 1.5583 -4.6473 -1.2680 25 1 -0.3633 0.0032 1.0277 26 1 -0.3634 0.8884 -0.5166 27 1 -0.3634 -0.8915 -0.5111 28 1 2.0136 2.1549 0.0004 29 1 4.4972 1.3253 -0.0117 30 1 5.1646 -1.6504 -1.0349 31 1 5.6097 -1.0343 0.5747 32 1 4.5816 -2.4801 0.4280 33 1 3.1603 -2.2605 -2.5099 34 1 1.4275 -1.8975 -2.7327 35 1 1.0459 -3.8621 -3.9388 36 1 2.8122 -3.7788 -4.2426 37 1 0.6871 -6.4985 -2.8760 38 1 -0.0447 -9.2476 -4.6178 39 1 1.9669 -5.1985 -0.4210 40 1 0.4808 -4.7984 -1.3337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018773017.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:35 Heat of formation + Delta-G solvation = 11.364684 kcal Electronic energy + Delta-G solvation = -21634.880348 eV Core-core repulsion = 18450.047567 eV Total energy + Delta-G solvation = -3184.832781 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.39302 -40.65463 -38.67462 -35.96657 -34.63322 -33.40663 -31.45467 -30.96668 -29.79143 -28.70612 -26.24390 -25.66166 -24.48050 -22.41279 -21.67906 -21.07210 -19.63203 -19.30293 -18.48401 -17.60180 -17.20216 -16.41753 -16.14181 -16.07563 -15.54095 -15.31652 -14.75944 -14.56787 -14.27991 -14.19728 -14.12065 -13.80481 -13.64552 -13.47840 -13.17402 -13.02912 -12.89269 -12.84087 -12.66064 -12.48196 -12.38527 -12.17027 -11.79449 -11.67889 -11.32457 -10.94634 -9.84927 -9.45232 -9.07449 -9.04379 -7.95295 -5.26295 0.85765 1.19198 1.49728 1.52373 1.58371 1.75007 1.97050 2.23460 2.57136 3.32005 3.46228 3.62556 3.85809 3.86957 4.00855 4.18865 4.21525 4.23436 4.34019 4.34510 4.40465 4.44157 4.56896 4.63483 4.77038 4.78967 4.85538 4.91893 5.05999 5.12010 5.14771 5.16971 5.37146 5.44267 5.52412 5.93410 6.05258 6.24592 6.31788 6.41084 6.87244 7.31710 8.01878 8.26422 9.27849 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032160 B = 0.003801 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.434922 B = 7364.452881 C = 7623.059292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.127 4.127 3 C -0.214 4.214 4 C 0.022 3.978 5 N -0.425 5.425 6 C 0.063 3.937 7 C -0.071 4.071 8 C 0.606 3.394 9 O -0.578 6.578 10 N -0.600 5.600 11 C 0.117 3.883 12 C -0.142 4.142 13 C 0.170 3.830 14 H 0.066 0.934 15 N -0.729 5.729 16 C -0.243 4.243 17 H 0.083 0.917 18 C -0.072 4.072 19 N -0.970 5.970 20 Si 0.974 3.026 21 H -0.278 1.278 22 H -0.299 1.299 23 H -0.275 1.275 24 C 0.107 3.893 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.040 0.960 28 H 0.163 0.837 29 H 0.208 0.792 30 H 0.094 0.906 31 H 0.119 0.881 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.088 0.912 37 H 0.374 0.626 38 H 0.251 0.749 39 H 0.066 0.934 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.027 21.476 5.539 23.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C -0.237 4.237 4 C -0.111 4.111 5 N -0.101 5.101 6 C -0.077 4.077 7 C -0.184 4.184 8 C 0.394 3.606 9 O -0.457 6.457 10 N -0.332 5.332 11 C -0.005 4.005 12 C -0.182 4.182 13 C 0.060 3.940 14 H 0.084 0.916 15 N -0.368 5.368 16 C -0.374 4.374 17 H 0.101 0.899 18 C -0.265 4.265 19 N -0.620 5.620 20 Si 0.803 3.197 21 H -0.204 1.204 22 H -0.226 1.226 23 H -0.200 1.200 24 C -0.017 4.017 25 H 0.081 0.919 26 H 0.108 0.892 27 H 0.059 0.941 28 H 0.180 0.820 29 H 0.224 0.776 30 H 0.113 0.887 31 H 0.137 0.863 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.206 0.794 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.307 20.884 6.029 23.645 hybrid contribution -0.408 -1.254 -0.437 1.389 sum 8.899 19.629 5.592 22.266 Atomic orbital electron populations 1.20209 0.89732 1.02277 1.01861 1.20083 0.95841 0.91612 1.05975 1.20970 0.91829 0.98768 1.12170 1.22532 1.00477 0.81813 1.06315 1.44028 1.04518 1.07228 1.54277 1.22344 0.85602 0.94640 1.05136 1.19715 0.85887 0.91847 1.20944 1.17133 0.77246 0.84453 0.81748 1.90802 1.50653 1.71364 1.32867 1.48485 1.67258 1.10040 1.07440 1.22057 1.01776 0.96692 0.79968 1.23224 1.02898 0.94233 0.97888 1.21400 0.95726 0.86840 0.89990 0.91587 1.42404 1.16902 1.28319 1.49223 1.19569 0.98446 1.04532 1.14860 0.89936 1.25583 0.97375 1.00470 1.03024 1.69819 1.14444 1.29314 1.48397 0.85204 0.77307 0.78026 0.79148 1.20380 1.22561 1.20045 1.22322 0.99950 0.80476 0.98933 0.91868 0.89196 0.94123 0.81976 0.77556 0.88711 0.86287 0.91979 0.90034 0.90606 0.91789 0.89310 0.79358 0.93979 0.91599 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.94 10.20 71.23 0.73 -1.22 16 2 C -0.13 -3.19 6.21 -19.57 -0.12 -3.31 16 3 C -0.21 -4.02 10.76 22.01 0.24 -3.78 16 4 C 0.02 0.35 11.38 83.48 0.95 1.30 16 5 N -0.43 -8.74 3.16 -534.28 -1.69 -10.43 16 6 C 0.06 0.94 10.98 127.77 1.40 2.34 16 7 C -0.07 -1.98 5.82 40.35 0.23 -1.74 16 8 C 0.61 20.66 6.60 86.45 0.57 21.23 16 9 O -0.58 -24.40 17.41 -4.34 -0.08 -24.47 16 10 N -0.60 -19.10 3.33 -816.48 -2.72 -21.82 16 11 C 0.12 3.08 6.47 86.73 0.56 3.64 16 12 C -0.14 -4.41 6.65 31.78 0.21 -4.20 16 13 C 0.17 6.42 3.68 46.38 0.17 6.59 16 14 H 0.07 2.45 8.13 -2.38 -0.02 2.43 16 15 N -0.73 -35.47 5.28 -316.39 -1.67 -37.14 16 16 C -0.24 -12.85 9.98 84.03 0.84 -12.01 16 17 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 18 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 19 N -0.97 -58.39 13.06 21.65 0.28 -58.11 16 20 Si 0.97 44.66 29.55 68.60 2.03 46.69 16 21 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 24 C 0.11 3.89 6.51 86.85 0.57 4.45 16 25 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.04 1.06 7.96 -2.39 -0.02 1.04 16 28 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 29 H 0.21 1.42 8.06 -2.91 -0.02 1.40 16 30 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 1.21 7.68 -2.38 -0.02 1.19 16 33 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.37 19.90 7.71 -92.70 -0.71 19.19 16 38 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 39 H 0.07 2.52 8.09 -2.38 -0.02 2.50 16 40 H 0.06 2.30 8.00 -2.39 -0.02 2.28 16 Total: -1.00 -71.26 338.81 3.29 -67.97 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 0.31 Total: 27.56 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 6.81 Total: 9.75 kcal Atomic # 7 Polarization: -121.70 SS G_CDS: -5.79 Total: -127.49 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.08 Total: -24.47 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -71.26 3.29 -67.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018773017.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.333 kcal (2) G-P(sol) polarization free energy of solvation -71.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds