Wall clock time and date at job start Mon Mar 30 2020 01:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35450 * 125.56342 * 2 1 4 4 C 1.39843 * 107.86929 * 180.02562 * 3 2 1 5 5 C 1.50690 * 126.46029 * 179.97438 * 4 3 2 6 6 C 1.37877 * 107.07821 * 0.02562 * 4 3 2 7 7 C 1.46682 * 126.22972 * 179.97438 * 6 4 3 8 8 O 1.21693 * 119.99877 * 5.49597 * 7 6 4 9 9 N 1.34775 * 120.00057 * 185.49630 * 7 6 4 10 10 C 1.47416 * 125.64977 * 175.19261 * 9 7 6 11 11 C 1.54905 * 104.83663 * 204.16642 * 10 9 7 12 12 C 1.55160 * 101.58057 * 322.99346 * 11 10 9 13 13 H 1.08999 * 110.87262 * 277.06541 * 12 11 10 14 14 N 1.46501 * 110.72209 * 153.86400 * 12 11 10 15 15 C 1.36932 * 119.99958 * 160.02569 * 14 12 11 16 16 H 1.08000 * 120.00555 * 359.97438 * 15 14 12 17 17 C 1.38813 * 119.99926 * 180.02562 * 15 14 12 18 18 N 1.31616 * 119.99971 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00123 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47568 * 180.02562 * 19 17 15 21 21 H 1.48508 * 109.46950 * 300.00070 * 19 17 15 22 22 H 1.48498 * 109.47465 * 59.99640 * 19 17 15 23 23 C 1.47023 * 125.64698 * 355.23898 * 9 7 6 24 24 N 1.35539 * 125.56821 * 180.31403 * 2 1 3 25 25 H 0.97001 * 125.67224 * 359.97438 * 24 2 1 26 26 H 1.09001 * 109.46958 * 89.97661 * 1 2 3 27 27 H 1.09000 * 109.47063 * 209.97075 * 1 2 3 28 28 H 1.08995 * 109.47011 * 329.97257 * 1 2 3 29 29 H 1.08000 * 126.06923 * 0.02562 * 3 2 1 30 30 H 1.09002 * 109.46952 * 270.04154 * 5 4 3 31 31 H 1.09005 * 109.47619 * 30.04472 * 5 4 3 32 32 H 1.09000 * 109.47315 * 150.04228 * 5 4 3 33 33 H 1.09001 * 110.36939 * 323.00894 * 10 9 7 34 34 H 1.09006 * 110.36415 * 85.32514 * 10 9 7 35 35 H 1.08999 * 111.00664 * 204.92177 * 11 10 9 36 36 H 1.09002 * 111.00775 * 81.06769 * 11 10 9 37 37 H 0.96995 * 119.99757 * 340.02291 * 14 12 11 38 38 H 0.97000 * 120.00110 * 359.97438 * 18 17 15 39 39 H 1.09005 * 109.88060 * 59.48740 * 23 9 7 40 40 H 1.09000 * 109.88038 * 298.32249 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 3.6271 0.6768 -0.0006 5 6 4.8485 1.5593 -0.0014 6 6 3.6122 -0.7019 -0.0015 7 6 4.7861 -1.5815 -0.0029 8 8 5.9021 -1.1069 0.0976 9 7 4.6286 -2.9152 -0.1155 10 6 5.7174 -3.9022 -0.2310 11 6 5.0739 -5.1221 -0.9363 12 6 3.6533 -5.1289 -0.3124 13 1 3.6561 -5.6325 0.6543 14 7 2.6915 -5.7592 -1.2201 15 6 1.5039 -6.2376 -0.7346 16 1 1.2764 -6.1508 0.3176 17 6 0.5928 -6.8353 -1.5946 18 7 0.8703 -6.9416 -2.8768 19 14 -1.0270 -7.4886 -0.9321 20 1 -1.8161 -8.0756 -2.0447 21 1 -0.7589 -8.5331 0.0889 22 1 -1.7933 -6.3771 -0.3137 23 6 3.3423 -3.6267 -0.1446 24 7 2.2954 -1.1025 -0.0060 25 1 1.9834 -2.0210 -0.0107 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3633 -0.8903 0.5134 28 1 -0.3633 0.8897 0.5142 29 1 1.9545 2.1268 0.0004 30 1 5.1421 1.7725 -1.0292 31 1 4.6225 2.4933 0.5131 32 1 5.6647 1.0504 0.5115 33 1 6.5311 -3.5006 -0.8349 34 1 6.0807 -4.1836 0.7575 35 1 5.6104 -6.0401 -0.6962 36 1 5.0263 -4.9698 -2.0145 37 1 2.8960 -5.8375 -2.1650 38 1 1.7112 -6.6020 -3.2208 39 1 2.7435 -3.2760 -0.9852 40 1 2.8060 -3.4612 0.7899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019047105.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:48 Heat of formation + Delta-G solvation = 21.236226 kcal Electronic energy + Delta-G solvation = -21789.139887 eV Core-core repulsion = 18604.735168 eV Total energy + Delta-G solvation = -3184.404719 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.42282 -39.34005 -37.39092 -34.52411 -32.71769 -32.09923 -31.25294 -29.74176 -27.83408 -27.33598 -26.32866 -23.93174 -22.73365 -20.97451 -20.37502 -20.09565 -18.92605 -17.60521 -17.32068 -16.18872 -15.90215 -15.08548 -14.87262 -14.54467 -14.01653 -13.75916 -13.50026 -13.37900 -13.13154 -12.95556 -12.93389 -12.85197 -12.51755 -12.16062 -12.11719 -11.97592 -11.53077 -11.43903 -11.30005 -10.86125 -10.80375 -10.48091 -10.12425 -9.81839 -9.36825 -9.16286 -8.70860 -8.54836 -7.88104 -7.32657 -6.30831 -3.34987 1.57357 2.74112 3.02821 3.30749 3.39404 3.42001 3.50618 3.60143 4.48397 4.63309 4.84155 4.93005 5.02174 5.13501 5.15963 5.26453 5.38710 5.47412 5.48234 5.48934 5.53526 5.73891 5.79484 5.82269 5.86781 5.90299 5.92115 5.99144 6.09349 6.17842 6.23025 6.39838 6.47722 6.58235 6.89303 7.07266 7.49299 7.58104 7.65420 8.28536 8.54294 8.96808 9.83776 9.96879 11.16384 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016759 B = 0.005409 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.337155 B = 5175.050628 C = 6577.325798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.051 3.949 3 C -0.213 4.213 4 C -0.078 4.078 5 C -0.088 4.088 6 C -0.055 4.055 7 C 0.602 3.398 8 O -0.540 6.540 9 N -0.616 5.616 10 C 0.113 3.887 11 C -0.142 4.142 12 C 0.180 3.820 13 H 0.070 0.930 14 N -0.724 5.724 15 C -0.348 4.348 16 H 0.067 0.933 17 C -0.036 4.036 18 N -0.935 5.935 19 Si 1.079 2.921 20 H -0.283 1.283 21 H -0.293 1.293 22 H -0.294 1.294 23 C 0.063 3.937 24 N -0.536 5.536 25 H 0.422 0.578 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.140 0.860 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.371 0.629 38 H 0.256 0.744 39 H 0.071 0.929 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.322 12.074 6.114 13.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.068 4.068 3 C -0.238 4.238 4 C -0.087 4.087 5 C -0.145 4.145 6 C -0.168 4.168 7 C 0.393 3.607 8 O -0.418 6.418 9 N -0.350 5.350 10 C -0.009 4.009 11 C -0.181 4.181 12 C 0.068 3.932 13 H 0.088 0.912 14 N -0.366 5.366 15 C -0.478 4.478 16 H 0.085 0.915 17 C -0.235 4.235 18 N -0.579 5.579 19 Si 0.909 3.091 20 H -0.209 1.209 21 H -0.220 1.220 22 H -0.221 1.221 23 C -0.063 4.063 24 N -0.137 5.137 25 H 0.266 0.734 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.158 0.842 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.205 0.795 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.394 11.397 5.962 13.083 hybrid contribution 1.114 0.308 0.160 1.167 sum 3.508 11.705 6.122 13.667 Atomic orbital electron populations 1.20427 0.87725 1.03533 1.03212 1.20597 0.93801 0.86472 1.05887 1.20509 0.91754 0.97741 1.13756 1.19862 0.95421 0.90868 1.02557 1.20316 0.94825 0.97413 1.01938 1.20090 0.83068 0.93904 1.19716 1.16749 0.87454 0.79955 0.76538 1.90759 1.24639 1.74544 1.51863 1.48446 1.09083 1.05076 1.72414 1.22165 0.90204 0.88106 1.00467 1.23092 0.97077 0.97235 1.00657 1.21095 0.88277 0.88795 0.95064 0.91189 1.42408 1.18090 1.69658 1.06401 1.20039 0.95502 1.37129 0.95126 0.91487 1.25830 1.03581 0.99262 0.94834 1.70900 1.25777 1.48328 1.12909 0.83260 0.74978 0.76021 0.74832 1.20871 1.22034 1.22137 1.23437 0.85004 0.97542 1.00357 1.42735 1.05449 1.09391 1.56159 0.73440 0.90491 0.91303 0.89900 0.84239 0.91859 0.92219 0.90147 0.90561 0.91428 0.89700 0.90651 0.79498 0.93226 0.91096 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.91 10.41 36.01 0.37 -0.54 16 2 C 0.05 0.68 7.13 -81.95 -0.58 0.10 16 3 C -0.21 -2.86 10.66 -39.98 -0.43 -3.29 16 4 C -0.08 -1.20 6.21 -104.16 -0.65 -1.84 16 5 C -0.09 -1.18 9.89 36.00 0.36 -0.82 16 6 C -0.06 -0.91 6.89 -81.98 -0.56 -1.48 16 7 C 0.60 10.71 7.81 -12.85 -0.10 10.61 16 8 O -0.54 -10.47 15.07 5.19 0.08 -10.39 16 9 N -0.62 -10.17 3.33 -172.06 -0.57 -10.74 16 10 C 0.11 1.66 6.89 -2.54 -0.02 1.64 16 11 C -0.14 -2.14 6.69 -24.58 -0.16 -2.30 16 12 C 0.18 3.25 3.59 -66.09 -0.24 3.02 16 13 H 0.07 1.28 8.12 -51.93 -0.42 0.86 16 14 N -0.72 -16.44 5.17 -51.65 -0.27 -16.70 16 15 C -0.35 -8.92 9.98 -15.06 -0.15 -9.07 16 16 H 0.07 1.68 7.83 -52.49 -0.41 1.27 16 17 C -0.04 -0.98 5.50 -17.43 -0.10 -1.08 16 18 N -0.94 -27.28 13.70 55.49 0.76 -26.52 16 19 Si 1.08 24.21 29.92 -169.99 -5.09 19.13 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 23 C 0.06 1.06 4.87 -3.06 -0.01 1.05 16 24 N -0.54 -8.05 5.60 -5.69 -0.03 -8.09 16 25 H 0.42 6.26 4.97 -40.82 -0.20 6.06 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.08 1.20 6.39 -51.93 -0.33 0.87 16 33 H 0.08 1.10 8.08 -51.93 -0.42 0.68 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.07 1.18 8.00 -51.93 -0.42 0.77 16 37 H 0.37 8.80 6.55 -40.82 -0.27 8.53 16 38 H 0.26 7.36 6.77 -40.82 -0.28 7.08 16 39 H 0.07 1.29 6.87 -51.93 -0.36 0.94 16 40 H 0.06 0.93 7.34 -51.93 -0.38 0.55 16 LS Contribution 326.60 15.07 4.92 4.92 Total: -1.00 -30.88 326.60 -8.13 -39.00 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -5.66 Total: 13.40 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -2.27 Total: -4.02 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: -0.11 Total: -62.05 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.08 Total: -10.39 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -5.09 Total: 19.13 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.88 -8.13 -39.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019047105.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.241 kcal (2) G-P(sol) polarization free energy of solvation -30.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds