Wall clock time and date at job start Mon Mar 30 2020 01:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35450 * 125.56342 * 2 1 4 4 C 1.39843 * 107.86929 * 180.02562 * 3 2 1 5 5 C 1.50690 * 126.46029 * 179.97438 * 4 3 2 6 6 C 1.37877 * 107.07821 * 0.02562 * 4 3 2 7 7 C 1.46682 * 126.22972 * 179.97438 * 6 4 3 8 8 O 1.21693 * 119.99877 * 5.49597 * 7 6 4 9 9 N 1.34775 * 120.00057 * 185.49630 * 7 6 4 10 10 C 1.47416 * 125.64977 * 175.19261 * 9 7 6 11 11 C 1.54905 * 104.83663 * 204.16642 * 10 9 7 12 12 C 1.55160 * 101.58057 * 322.99346 * 11 10 9 13 13 H 1.08999 * 110.87262 * 277.06541 * 12 11 10 14 14 N 1.46501 * 110.72209 * 153.86400 * 12 11 10 15 15 C 1.36932 * 119.99958 * 160.02569 * 14 12 11 16 16 H 1.08000 * 120.00555 * 359.97438 * 15 14 12 17 17 C 1.38813 * 119.99926 * 180.02562 * 15 14 12 18 18 N 1.31616 * 119.99971 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00123 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47568 * 180.02562 * 19 17 15 21 21 H 1.48508 * 109.46950 * 300.00070 * 19 17 15 22 22 H 1.48498 * 109.47465 * 59.99640 * 19 17 15 23 23 C 1.47023 * 125.64698 * 355.23898 * 9 7 6 24 24 N 1.35539 * 125.56821 * 180.31403 * 2 1 3 25 25 H 0.97001 * 125.67224 * 359.97438 * 24 2 1 26 26 H 1.09001 * 109.46958 * 89.97661 * 1 2 3 27 27 H 1.09000 * 109.47063 * 209.97075 * 1 2 3 28 28 H 1.08995 * 109.47011 * 329.97257 * 1 2 3 29 29 H 1.08000 * 126.06923 * 0.02562 * 3 2 1 30 30 H 1.09002 * 109.46952 * 270.04154 * 5 4 3 31 31 H 1.09005 * 109.47619 * 30.04472 * 5 4 3 32 32 H 1.09000 * 109.47315 * 150.04228 * 5 4 3 33 33 H 1.09001 * 110.36939 * 323.00894 * 10 9 7 34 34 H 1.09006 * 110.36415 * 85.32514 * 10 9 7 35 35 H 1.08999 * 111.00664 * 204.92177 * 11 10 9 36 36 H 1.09002 * 111.00775 * 81.06769 * 11 10 9 37 37 H 0.96995 * 119.99757 * 340.02291 * 14 12 11 38 38 H 0.97000 * 120.00110 * 359.97438 * 18 17 15 39 39 H 1.09005 * 109.88060 * 59.48740 * 23 9 7 40 40 H 1.09000 * 109.88038 * 298.32249 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 3.6271 0.6768 -0.0006 5 6 4.8485 1.5593 -0.0014 6 6 3.6122 -0.7019 -0.0015 7 6 4.7861 -1.5815 -0.0029 8 8 5.9021 -1.1069 0.0976 9 7 4.6286 -2.9152 -0.1155 10 6 5.7174 -3.9022 -0.2310 11 6 5.0739 -5.1221 -0.9363 12 6 3.6533 -5.1289 -0.3124 13 1 3.6561 -5.6325 0.6543 14 7 2.6915 -5.7592 -1.2201 15 6 1.5039 -6.2376 -0.7346 16 1 1.2764 -6.1508 0.3176 17 6 0.5928 -6.8353 -1.5946 18 7 0.8703 -6.9416 -2.8768 19 14 -1.0270 -7.4886 -0.9321 20 1 -1.8161 -8.0756 -2.0447 21 1 -0.7589 -8.5331 0.0889 22 1 -1.7933 -6.3771 -0.3137 23 6 3.3423 -3.6267 -0.1446 24 7 2.2954 -1.1025 -0.0060 25 1 1.9834 -2.0210 -0.0107 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3633 -0.8903 0.5134 28 1 -0.3633 0.8897 0.5142 29 1 1.9545 2.1268 0.0004 30 1 5.1421 1.7725 -1.0292 31 1 4.6225 2.4933 0.5131 32 1 5.6647 1.0504 0.5115 33 1 6.5311 -3.5006 -0.8349 34 1 6.0807 -4.1836 0.7575 35 1 5.6104 -6.0401 -0.6962 36 1 5.0263 -4.9698 -2.0145 37 1 2.8960 -5.8375 -2.1650 38 1 1.7112 -6.6020 -3.2208 39 1 2.7435 -3.2760 -0.9852 40 1 2.8060 -3.4612 0.7899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019047105.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:48 Heat of formation + Delta-G solvation = 2.076056 kcal Electronic energy + Delta-G solvation = -21789.970734 eV Core-core repulsion = 18604.735168 eV Total energy + Delta-G solvation = -3185.235566 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.56783 -40.65194 -38.82313 -36.28791 -33.87960 -33.44493 -32.62026 -31.10428 -29.20699 -28.50623 -27.53178 -25.73199 -24.11425 -22.31919 -21.63612 -21.26264 -20.08933 -19.49257 -18.59765 -17.56091 -17.30335 -16.40307 -16.28921 -15.98469 -15.63716 -15.22195 -14.87747 -14.62944 -14.30200 -14.11604 -13.96222 -13.87060 -13.67994 -13.46369 -13.13675 -12.99905 -12.95178 -12.86620 -12.60222 -12.47234 -12.40067 -11.89991 -11.87328 -11.32067 -11.15758 -10.97604 -9.94855 -9.74196 -9.25340 -9.01325 -8.41086 -5.39562 0.35921 1.60270 1.67264 1.68168 1.76348 1.84775 2.15751 2.22567 2.69265 3.28795 3.33755 3.65338 3.67486 3.74918 3.90598 4.09710 4.13632 4.15553 4.24043 4.34847 4.43704 4.58589 4.65859 4.74320 4.78264 4.78901 4.84881 4.88587 4.95113 5.05163 5.08032 5.16530 5.24910 5.42399 5.57814 5.81256 5.96622 6.29707 6.40410 6.46323 6.94650 7.01493 7.90796 8.02323 9.09668 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016759 B = 0.005409 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.337155 B = 5175.050628 C = 6577.325798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.055 3.945 3 C -0.218 4.218 4 C -0.085 4.085 5 C -0.085 4.085 6 C -0.094 4.094 7 C 0.597 3.403 8 O -0.564 6.564 9 N -0.617 5.617 10 C 0.114 3.886 11 C -0.129 4.129 12 C 0.173 3.827 13 H 0.074 0.926 14 N -0.735 5.735 15 C -0.337 4.337 16 H 0.074 0.926 17 C -0.095 4.095 18 N -0.973 5.973 19 Si 1.123 2.877 20 H -0.297 1.297 21 H -0.278 1.278 22 H -0.274 1.274 23 C 0.080 3.920 24 N -0.542 5.542 25 H 0.419 0.581 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.109 0.891 29 H 0.168 0.832 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.067 0.933 37 H 0.363 0.637 38 H 0.245 0.755 39 H 0.055 0.945 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.546 13.144 7.424 15.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.064 4.064 3 C -0.242 4.242 4 C -0.094 4.094 5 C -0.142 4.142 6 C -0.205 4.205 7 C 0.389 3.611 8 O -0.445 6.445 9 N -0.351 5.351 10 C -0.008 4.008 11 C -0.167 4.167 12 C 0.063 3.937 13 H 0.092 0.908 14 N -0.376 5.376 15 C -0.468 4.468 16 H 0.091 0.909 17 C -0.287 4.287 18 N -0.620 5.620 19 Si 0.948 3.052 20 H -0.224 1.224 21 H -0.204 1.204 22 H -0.200 1.200 23 C -0.047 4.047 24 N -0.143 5.143 25 H 0.262 0.738 26 H 0.102 0.898 27 H 0.089 0.911 28 H 0.127 0.873 29 H 0.186 0.814 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.123 0.877 36 H 0.086 0.914 37 H 0.196 0.804 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.658 12.490 7.316 14.569 hybrid contribution 1.396 0.059 -0.208 1.413 sum 3.054 12.549 7.108 14.742 Atomic orbital electron populations 1.20575 0.85240 1.04932 1.04064 1.21273 0.95364 0.85911 1.03830 1.20874 0.90803 0.99155 1.13334 1.20291 0.96909 0.90700 1.01519 1.20319 0.93605 0.98018 1.02239 1.20129 0.83372 0.94475 1.22551 1.16992 0.87680 0.80250 0.76179 1.90733 1.25561 1.74900 1.53256 1.48473 1.09278 1.05149 1.72169 1.22279 0.89797 0.87314 1.01428 1.23009 0.95282 0.98438 1.00007 1.21283 0.88934 0.88925 0.94600 0.90837 1.42533 1.18282 1.70195 1.06618 1.20372 0.96068 1.35103 0.95281 0.90852 1.27099 1.06735 1.00271 0.94590 1.71005 1.25787 1.50869 1.14313 0.82682 0.71860 0.76369 0.74265 1.22373 1.20444 1.20016 1.23093 0.85105 0.96389 1.00102 1.42772 1.05229 1.09741 1.56570 0.73765 0.89787 0.91148 0.87279 0.81406 0.91493 0.89603 0.92071 0.90192 0.89714 0.87714 0.91427 0.80432 0.94437 0.92640 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.57 10.41 71.24 0.74 -0.82 16 2 C 0.06 1.36 7.13 41.34 0.29 1.66 16 3 C -0.22 -5.35 10.66 22.01 0.23 -5.12 16 4 C -0.08 -2.50 6.21 -19.56 -0.12 -2.63 16 5 C -0.08 -2.18 9.89 71.23 0.70 -1.48 16 6 C -0.09 -3.08 6.89 40.35 0.28 -2.80 16 7 C 0.60 21.25 7.81 86.45 0.68 21.93 16 8 O -0.56 -22.03 15.07 -4.33 -0.07 -22.10 16 9 N -0.62 -20.11 3.33 -816.50 -2.72 -22.83 16 10 C 0.11 3.20 6.89 86.86 0.60 3.80 16 11 C -0.13 -3.75 6.69 31.99 0.21 -3.53 16 12 C 0.17 6.12 3.59 46.18 0.17 6.28 16 13 H 0.07 2.57 8.12 -2.39 -0.02 2.55 16 14 N -0.74 -33.34 5.17 -317.33 -1.64 -34.98 16 15 C -0.34 -17.14 9.98 84.03 0.84 -16.31 16 16 H 0.07 3.58 7.83 -2.91 -0.02 3.56 16 17 C -0.09 -5.11 5.50 84.86 0.47 -4.65 16 18 N -0.97 -57.61 13.70 21.65 0.30 -57.32 16 19 Si 1.12 48.28 29.92 68.60 2.05 50.33 16 20 H -0.30 -13.38 7.11 99.48 0.71 -12.68 16 21 H -0.28 -11.16 7.11 99.48 0.71 -10.46 16 22 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 23 C 0.08 2.64 4.87 86.73 0.42 3.07 16 24 N -0.54 -15.89 5.60 -171.93 -0.96 -16.86 16 25 H 0.42 12.29 4.97 -92.71 -0.46 11.83 16 26 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.17 3.04 8.06 -2.91 -0.02 3.02 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.06 1.82 6.39 -2.39 -0.02 1.80 16 33 H 0.08 2.22 8.08 -2.39 -0.02 2.20 16 34 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 35 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.07 2.09 8.00 -2.39 -0.02 2.07 16 37 H 0.36 17.53 6.55 -92.71 -0.61 16.93 16 38 H 0.25 14.47 6.77 -92.71 -0.63 13.84 16 39 H 0.06 2.04 6.87 -2.38 -0.02 2.02 16 40 H 0.07 2.05 7.34 -2.39 -0.02 2.04 16 Total: -1.00 -66.40 326.60 2.61 -63.79 By element: Atomic # 1 Polarization: 40.43 SS G_CDS: 0.14 Total: 40.56 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 5.51 Total: -0.60 kcal Atomic # 7 Polarization: -126.96 SS G_CDS: -5.02 Total: -131.99 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.07 Total: -22.10 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 2.05 Total: 50.33 kcal Total: -66.40 2.61 -63.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019047105.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.867 kcal (2) G-P(sol) polarization free energy of solvation -66.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds