Wall clock time and date at job start Mon Mar 30 2020 01:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34492 * 125.57087 * 2 1 4 4 C 1.46686 * 106.33160 * 180.02562 * 3 2 1 5 5 C 1.47264 * 126.93975 * 179.97438 * 4 3 2 6 6 O 1.21623 * 119.99872 * 185.58092 * 5 4 3 7 7 N 1.34770 * 120.00162 * 5.58915 * 5 4 3 8 8 C 1.47428 * 125.64923 * 175.20580 * 7 5 4 9 9 C 1.54920 * 104.82858 * 204.16182 * 8 7 5 10 10 C 1.55155 * 101.58223 * 322.99003 * 9 8 7 11 11 H 1.09001 * 110.87250 * 277.06971 * 10 9 8 12 12 N 1.46495 * 110.72019 * 153.86769 * 10 9 8 13 13 C 1.36936 * 120.00114 * 160.02136 * 12 10 9 14 14 H 1.07996 * 120.00030 * 359.97438 * 13 12 10 15 15 C 1.38820 * 119.99908 * 179.97438 * 13 12 10 16 16 N 1.31616 * 119.99603 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 119.99665 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47409 * 269.99741 * 17 15 13 19 19 H 1.48500 * 109.47538 * 30.00480 * 17 15 13 20 20 H 1.48502 * 109.46774 * 150.00019 * 17 15 13 21 21 C 1.47028 * 125.64657 * 355.24464 * 7 5 4 22 22 C 1.36771 * 106.11606 * 0.26578 * 4 3 2 23 23 C 1.50701 * 125.80063 * 179.72126 * 22 4 3 24 24 N 1.34661 * 108.39481 * 359.56985 * 22 4 3 25 25 H 0.96997 * 124.84834 * 180.14854 * 24 22 4 26 26 H 1.08999 * 109.47143 * 90.00169 * 1 2 3 27 27 H 1.09005 * 109.47225 * 209.99942 * 1 2 3 28 28 H 1.08995 * 109.47081 * 329.99676 * 1 2 3 29 29 H 1.08000 * 126.83262 * 359.97438 * 3 2 1 30 30 H 1.09001 * 110.36575 * 322.99696 * 8 7 5 31 31 H 1.09000 * 110.36683 * 85.32633 * 8 7 5 32 32 H 1.08996 * 110.99710 * 204.91169 * 9 8 7 33 33 H 1.08998 * 111.00070 * 81.06590 * 9 8 7 34 34 H 0.97007 * 120.00095 * 340.02511 * 12 10 9 35 35 H 0.96993 * 120.00854 * 0.02562 * 16 15 13 36 36 H 1.08995 * 109.88174 * 59.48984 * 21 7 5 37 37 H 1.08999 * 109.88034 * 298.32005 * 21 7 5 38 38 H 1.08997 * 109.47384 * 89.99431 * 23 22 4 39 39 H 1.09000 * 109.46629 * 209.99862 * 23 22 4 40 40 H 1.09001 * 109.46777 * 329.98921 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2893 1.0940 0.0000 4 6 3.6742 0.6106 -0.0006 5 6 4.8977 1.4303 -0.0014 6 8 5.9863 0.8978 -0.1043 7 7 4.8111 2.7704 0.1121 8 6 5.9509 3.6986 0.2254 9 6 5.3740 4.9504 0.9326 10 6 3.9544 5.0324 0.3119 11 1 3.9816 5.5356 -0.6547 12 7 3.0293 5.7121 1.2220 13 6 1.8675 6.2528 0.7393 14 1 1.6334 6.1786 -0.3123 15 6 0.9906 6.8964 1.6019 16 7 1.2762 6.9872 2.8835 17 14 -0.5939 7.6346 0.9433 18 1 -0.3526 9.0423 0.5366 19 1 -1.0539 6.8517 -0.2318 20 1 -1.6350 7.5966 2.0016 21 6 3.5641 3.5488 0.1443 22 6 3.5997 -0.7551 -0.0071 23 6 4.7722 -1.7019 -0.0160 24 7 2.3007 -1.1098 -0.0006 25 1 1.9757 -2.0237 -0.0011 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.9628 2.1234 -0.0004 30 1 6.7435 3.2543 0.8274 31 1 6.3262 3.9609 -0.7638 32 1 5.9577 5.8388 0.6918 33 1 5.3209 4.8002 2.0109 34 1 3.2397 5.7791 2.1666 35 1 2.0994 6.6049 3.2253 36 1 2.9497 3.2297 0.9861 37 1 3.0178 3.4123 -0.7890 38 1 5.0587 -1.9351 1.0094 39 1 4.4937 -2.6200 -0.5333 40 1 5.6120 -1.2352 -0.5309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019439516.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:20 Heat of formation + Delta-G solvation = 22.108685 kcal Electronic energy + Delta-G solvation = -21711.791680 eV Core-core repulsion = 18527.424794 eV Total energy + Delta-G solvation = -3184.366886 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.28315 -39.23071 -37.10895 -34.29429 -32.60663 -31.84138 -30.94513 -29.44715 -29.00023 -27.25493 -25.14547 -23.71996 -22.87767 -21.07468 -20.69681 -19.98605 -18.17665 -17.40884 -16.95525 -15.89855 -15.82739 -15.08741 -14.89717 -14.39524 -13.88503 -13.70523 -13.57119 -13.31695 -13.23292 -13.05815 -12.88911 -12.61754 -12.34633 -12.19843 -12.07817 -11.77825 -11.40609 -11.31117 -10.96291 -10.71451 -10.56029 -10.26031 -10.04553 -9.56644 -9.21877 -8.97252 -8.72173 -8.26409 -7.86050 -7.13323 -6.15600 -3.17520 1.87779 2.49392 3.08608 3.48976 3.52175 3.53858 3.67645 3.80555 4.62503 4.80828 4.84684 4.97791 5.11800 5.21855 5.24373 5.34477 5.41431 5.50431 5.56185 5.62421 5.66239 5.69537 5.82513 5.85906 5.95433 5.99247 6.03908 6.05232 6.24949 6.31833 6.37346 6.51649 6.69400 6.85416 6.90803 7.06870 7.48337 7.76101 7.98251 8.61858 8.70073 9.14677 10.01359 10.15477 11.32357 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016471 B = 0.005373 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.581742 B = 5210.237120 C = 6642.182715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.003 3.997 3 C -0.164 4.164 4 C -0.226 4.226 5 C 0.604 3.396 6 O -0.567 6.567 7 N -0.608 5.608 8 C 0.113 3.887 9 C -0.142 4.142 10 C 0.174 3.826 11 H 0.066 0.934 12 N -0.726 5.726 13 C -0.338 4.338 14 H 0.067 0.933 15 C -0.040 4.040 16 N -0.941 5.941 17 Si 1.082 2.918 18 H -0.295 1.295 19 H -0.294 1.294 20 H -0.288 1.288 21 C 0.077 3.923 22 C 0.097 3.903 23 C -0.092 4.092 24 N -0.551 5.551 25 H 0.411 0.589 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.160 0.840 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.370 0.630 35 H 0.256 0.744 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.658 -15.401 -6.289 16.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C -0.188 4.188 4 C -0.236 4.236 5 C 0.396 3.604 6 O -0.448 6.448 7 N -0.341 5.341 8 C -0.010 4.010 9 C -0.181 4.181 10 C 0.062 3.938 11 H 0.084 0.916 12 N -0.367 5.367 13 C -0.469 4.469 14 H 0.085 0.915 15 C -0.238 4.238 16 N -0.586 5.586 17 Si 0.912 3.088 18 H -0.223 1.223 19 H -0.220 1.220 20 H -0.214 1.214 21 C -0.049 4.049 22 C -0.020 4.020 23 C -0.150 4.150 24 N -0.148 5.148 25 H 0.247 0.753 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.104 0.896 29 H 0.177 0.823 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.204 0.796 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.675 -14.984 -6.146 16.282 hybrid contribution 1.121 -1.230 -0.160 1.672 sum 2.795 -16.214 -6.306 17.620 Atomic orbital electron populations 1.20327 0.87717 1.03451 1.02626 1.20290 0.93537 0.85891 1.10806 1.22562 0.90782 0.98791 1.06625 1.20055 0.93106 0.91992 1.18439 1.17015 0.87615 0.80203 0.75612 1.90670 1.29168 1.71950 1.53048 1.48260 1.08930 1.04941 1.71980 1.22119 0.89456 0.89320 1.00097 1.23077 0.97715 0.96745 1.00558 1.21182 0.88212 0.89735 0.94633 0.91641 1.42389 1.21800 1.66155 1.06368 1.20084 0.98069 1.33598 0.95100 0.91490 1.25771 1.03472 0.99746 0.94858 1.70846 1.26796 1.47932 1.13019 0.83215 0.75350 0.75800 0.74410 1.22264 1.22043 1.21396 1.23459 0.85914 0.94224 1.01307 1.20211 0.84807 0.94144 1.02850 1.20547 0.94890 0.96322 1.03193 1.41503 1.05300 1.08601 1.59379 0.75327 0.91115 0.92029 0.89596 0.82263 0.90989 0.91814 0.90123 0.90828 0.79642 0.93254 0.90528 0.92124 0.90772 0.92137 0.87960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.41 36.00 0.37 -0.45 16 2 C 0.00 0.04 7.13 -81.87 -0.58 -0.54 16 3 C -0.16 -2.60 9.28 -37.50 -0.35 -2.95 16 4 C -0.23 -3.78 6.22 -103.35 -0.64 -4.42 16 5 C 0.60 11.17 7.83 -12.59 -0.10 11.07 16 6 O -0.57 -11.24 15.08 5.26 0.08 -11.16 16 7 N -0.61 -10.78 3.33 -171.83 -0.57 -11.36 16 8 C 0.11 1.79 6.89 -2.52 -0.02 1.77 16 9 C -0.14 -2.31 6.69 -24.58 -0.16 -2.48 16 10 C 0.17 3.37 3.59 -66.10 -0.24 3.14 16 11 H 0.07 1.28 8.12 -51.93 -0.42 0.86 16 12 N -0.73 -17.32 5.17 -51.65 -0.27 -17.59 16 13 C -0.34 -9.03 9.98 -15.06 -0.15 -9.18 16 14 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 15 C -0.04 -1.13 5.50 -17.43 -0.10 -1.22 16 16 N -0.94 -28.25 13.70 55.49 0.76 -27.49 16 17 Si 1.08 25.07 29.92 -169.99 -5.09 19.99 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 C 0.08 1.41 4.75 -3.06 -0.01 1.39 16 22 C 0.10 1.34 7.17 -81.88 -0.59 0.76 16 23 C -0.09 -1.04 9.94 36.01 0.36 -0.69 16 24 N -0.55 -6.25 5.90 -5.42 -0.03 -6.28 16 25 H 0.41 3.12 8.96 -40.82 -0.37 2.75 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.16 2.66 4.84 -52.49 -0.25 2.40 16 30 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.07 1.24 8.00 -51.93 -0.42 0.82 16 34 H 0.37 9.18 6.55 -40.82 -0.27 8.91 16 35 H 0.26 7.58 6.77 -40.82 -0.28 7.31 16 36 H 0.08 1.54 6.62 -51.93 -0.34 1.19 16 37 H 0.06 1.09 7.13 -51.93 -0.37 0.72 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.10 1.37 6.37 -51.93 -0.33 1.04 16 LS Contribution 326.08 15.07 4.91 4.91 Total: -1.00 -32.88 326.08 -8.04 -40.92 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -5.63 Total: 11.86 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Atomic # 7 Polarization: -62.61 SS G_CDS: -0.11 Total: -62.72 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.08 Total: -11.16 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -5.09 Total: 19.99 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.88 -8.04 -40.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019439516.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.033 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds