Wall clock time and date at job start Mon Mar 30 2020 01:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34492 * 125.57087 * 2 1 4 4 C 1.46686 * 106.33160 * 180.02562 * 3 2 1 5 5 C 1.47264 * 126.93975 * 179.97438 * 4 3 2 6 6 O 1.21623 * 119.99872 * 185.58092 * 5 4 3 7 7 N 1.34770 * 120.00162 * 5.58915 * 5 4 3 8 8 C 1.47428 * 125.64923 * 175.20580 * 7 5 4 9 9 C 1.54920 * 104.82858 * 204.16182 * 8 7 5 10 10 C 1.55155 * 101.58223 * 322.99003 * 9 8 7 11 11 H 1.09001 * 110.87250 * 277.06971 * 10 9 8 12 12 N 1.46495 * 110.72019 * 153.86769 * 10 9 8 13 13 C 1.36936 * 120.00114 * 160.02136 * 12 10 9 14 14 H 1.07996 * 120.00030 * 359.97438 * 13 12 10 15 15 C 1.38820 * 119.99908 * 179.97438 * 13 12 10 16 16 N 1.31616 * 119.99603 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 119.99665 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47409 * 269.99741 * 17 15 13 19 19 H 1.48500 * 109.47538 * 30.00480 * 17 15 13 20 20 H 1.48502 * 109.46774 * 150.00019 * 17 15 13 21 21 C 1.47028 * 125.64657 * 355.24464 * 7 5 4 22 22 C 1.36771 * 106.11606 * 0.26578 * 4 3 2 23 23 C 1.50701 * 125.80063 * 179.72126 * 22 4 3 24 24 N 1.34661 * 108.39481 * 359.56985 * 22 4 3 25 25 H 0.96997 * 124.84834 * 180.14854 * 24 22 4 26 26 H 1.08999 * 109.47143 * 90.00169 * 1 2 3 27 27 H 1.09005 * 109.47225 * 209.99942 * 1 2 3 28 28 H 1.08995 * 109.47081 * 329.99676 * 1 2 3 29 29 H 1.08000 * 126.83262 * 359.97438 * 3 2 1 30 30 H 1.09001 * 110.36575 * 322.99696 * 8 7 5 31 31 H 1.09000 * 110.36683 * 85.32633 * 8 7 5 32 32 H 1.08996 * 110.99710 * 204.91169 * 9 8 7 33 33 H 1.08998 * 111.00070 * 81.06590 * 9 8 7 34 34 H 0.97007 * 120.00095 * 340.02511 * 12 10 9 35 35 H 0.96993 * 120.00854 * 0.02562 * 16 15 13 36 36 H 1.08995 * 109.88174 * 59.48984 * 21 7 5 37 37 H 1.08999 * 109.88034 * 298.32005 * 21 7 5 38 38 H 1.08997 * 109.47384 * 89.99431 * 23 22 4 39 39 H 1.09000 * 109.46629 * 209.99862 * 23 22 4 40 40 H 1.09001 * 109.46777 * 329.98921 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2893 1.0940 0.0000 4 6 3.6742 0.6106 -0.0006 5 6 4.8977 1.4303 -0.0014 6 8 5.9863 0.8978 -0.1043 7 7 4.8111 2.7704 0.1121 8 6 5.9509 3.6986 0.2254 9 6 5.3740 4.9504 0.9326 10 6 3.9544 5.0324 0.3119 11 1 3.9816 5.5356 -0.6547 12 7 3.0293 5.7121 1.2220 13 6 1.8675 6.2528 0.7393 14 1 1.6334 6.1786 -0.3123 15 6 0.9906 6.8964 1.6019 16 7 1.2762 6.9872 2.8835 17 14 -0.5939 7.6346 0.9433 18 1 -0.3526 9.0423 0.5366 19 1 -1.0539 6.8517 -0.2318 20 1 -1.6350 7.5966 2.0016 21 6 3.5641 3.5488 0.1443 22 6 3.5997 -0.7551 -0.0071 23 6 4.7722 -1.7019 -0.0160 24 7 2.3007 -1.1098 -0.0006 25 1 1.9757 -2.0237 -0.0011 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.9628 2.1234 -0.0004 30 1 6.7435 3.2543 0.8274 31 1 6.3262 3.9609 -0.7638 32 1 5.9577 5.8388 0.6918 33 1 5.3209 4.8002 2.0109 34 1 3.2397 5.7791 2.1666 35 1 2.0994 6.6049 3.2253 36 1 2.9497 3.2297 0.9861 37 1 3.0178 3.4123 -0.7890 38 1 5.0587 -1.9351 1.0094 39 1 4.4937 -2.6200 -0.5333 40 1 5.6120 -1.2352 -0.5309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019439516.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:19 Heat of formation + Delta-G solvation = 0.237986 kcal Electronic energy + Delta-G solvation = -21712.740065 eV Core-core repulsion = 18527.424794 eV Total energy + Delta-G solvation = -3185.315271 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.37877 -40.63033 -38.62382 -36.15785 -33.61153 -33.36052 -32.42243 -30.79557 -29.96974 -28.90208 -26.43993 -25.46541 -24.25220 -22.44089 -21.98624 -21.29092 -19.54469 -19.35130 -18.12610 -17.35841 -17.10380 -16.47913 -16.20299 -15.97681 -15.63372 -15.19441 -14.93850 -14.51715 -14.42034 -14.14035 -14.00626 -13.88640 -13.59408 -13.25041 -13.13207 -12.94575 -12.83354 -12.70224 -12.54734 -12.41962 -12.18012 -11.83632 -11.77351 -11.24590 -11.03094 -10.84087 -9.89480 -9.64216 -9.15539 -8.96524 -8.35502 -5.31812 0.68461 1.38093 1.62909 1.72641 1.86625 1.97270 2.30674 2.46878 2.74577 3.40840 3.47459 3.78156 3.83188 3.86232 3.93544 4.18128 4.21002 4.23423 4.31581 4.44478 4.47110 4.58435 4.69600 4.70644 4.77207 4.80212 4.86038 4.95228 5.03470 5.05277 5.10861 5.22776 5.28145 5.41049 5.64916 5.76165 5.96836 6.52409 6.54334 6.62512 7.08814 7.22051 7.98812 8.10670 9.15936 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016471 B = 0.005373 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.581742 B = 5210.237120 C = 6642.182715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.017 3.983 3 C -0.199 4.199 4 C -0.269 4.269 5 C 0.596 3.404 6 O -0.587 6.587 7 N -0.613 5.613 8 C 0.114 3.886 9 C -0.128 4.128 10 C 0.167 3.833 11 H 0.068 0.932 12 N -0.736 5.736 13 C -0.331 4.331 14 H 0.071 0.929 15 C -0.099 4.099 16 N -0.976 5.976 17 Si 1.127 2.873 18 H -0.287 1.287 19 H -0.270 1.270 20 H -0.296 1.296 21 C 0.098 3.902 22 C 0.107 3.893 23 C -0.088 4.088 24 N -0.532 5.532 25 H 0.432 0.568 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.141 0.859 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.066 0.934 34 H 0.362 0.638 35 H 0.244 0.756 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.026 -17.122 -7.494 18.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.092 4.092 3 C -0.223 4.223 4 C -0.279 4.279 5 C 0.389 3.611 6 O -0.470 6.470 7 N -0.345 5.345 8 C -0.008 4.008 9 C -0.167 4.167 10 C 0.057 3.943 11 H 0.086 0.914 12 N -0.377 5.377 13 C -0.462 4.462 14 H 0.089 0.911 15 C -0.290 4.290 16 N -0.623 5.623 17 Si 0.952 3.048 18 H -0.213 1.213 19 H -0.195 1.195 20 H -0.222 1.222 21 C -0.028 4.028 22 C -0.012 4.012 23 C -0.146 4.146 24 N -0.130 5.130 25 H 0.273 0.727 26 H 0.105 0.895 27 H 0.107 0.893 28 H 0.094 0.906 29 H 0.158 0.842 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.120 0.880 33 H 0.084 0.916 34 H 0.195 0.805 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.067 -16.749 -7.392 18.339 hybrid contribution 1.364 -0.797 0.177 1.590 sum 2.431 -17.545 -7.215 19.126 Atomic orbital electron populations 1.20424 0.85281 1.04339 1.03908 1.20653 0.94898 0.85443 1.08238 1.22467 0.91252 0.99029 1.09524 1.20171 0.92755 0.93434 1.21528 1.17385 0.88141 0.80370 0.75170 1.90643 1.29964 1.72184 1.54231 1.48316 1.08997 1.05184 1.72035 1.22221 0.89018 0.88576 1.01013 1.22986 0.95821 0.97967 0.99923 1.21365 0.89160 0.89647 0.94158 0.91442 1.42519 1.21979 1.66645 1.06589 1.20404 0.98600 1.32016 0.95195 0.91111 1.27109 1.06553 1.00767 0.94572 1.70958 1.26898 1.50106 1.14367 0.82630 0.71929 0.75804 0.74425 1.21347 1.19535 1.22231 1.23037 0.85987 0.93366 1.00386 1.20524 0.86294 0.93565 1.00825 1.20569 0.93118 0.96973 1.03908 1.41454 1.04288 1.09473 1.57759 0.72714 0.89541 0.89285 0.90564 0.84152 0.90480 0.90182 0.88043 0.91561 0.80528 0.94505 0.92645 0.92161 0.89936 0.88464 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.41 10.41 71.23 0.74 -0.67 16 2 C 0.02 0.42 7.13 40.98 0.29 0.71 16 3 C -0.20 -6.37 9.28 23.62 0.22 -6.15 16 4 C -0.27 -9.02 6.22 -19.04 -0.12 -9.14 16 5 C 0.60 22.32 7.83 86.62 0.68 23.00 16 6 O -0.59 -23.41 15.08 -4.11 -0.06 -23.47 16 7 N -0.61 -21.94 3.33 -815.81 -2.71 -24.65 16 8 C 0.11 3.53 6.89 86.86 0.60 4.13 16 9 C -0.13 -4.11 6.69 31.99 0.21 -3.90 16 10 C 0.17 6.49 3.59 46.18 0.17 6.65 16 11 H 0.07 2.61 8.12 -2.39 -0.02 2.59 16 12 N -0.74 -35.75 5.17 -317.34 -1.64 -37.39 16 13 C -0.33 -17.80 9.98 84.04 0.84 -16.96 16 14 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 15 C -0.10 -5.54 5.50 84.86 0.47 -5.07 16 16 N -0.98 -59.77 13.70 21.65 0.30 -59.47 16 17 Si 1.13 50.40 29.92 68.60 2.05 52.45 16 18 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 19 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 20 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 21 C 0.10 3.69 4.75 86.73 0.41 4.10 16 22 C 0.11 2.80 7.17 41.78 0.30 3.10 16 23 C -0.09 -1.82 9.94 71.24 0.71 -1.11 16 24 N -0.53 -10.66 5.90 -171.07 -1.01 -11.67 16 25 H 0.43 4.90 8.96 -92.71 -0.83 4.07 16 26 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 28 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.14 4.91 4.84 -2.91 -0.01 4.90 16 30 H 0.08 2.33 8.08 -2.39 -0.02 2.31 16 31 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 33 H 0.07 2.23 8.00 -2.39 -0.02 2.21 16 34 H 0.36 18.54 6.55 -92.70 -0.61 17.94 16 35 H 0.24 14.96 6.77 -92.71 -0.63 14.34 16 36 H 0.06 2.33 6.62 -2.39 -0.02 2.31 16 37 H 0.06 2.24 7.13 -2.39 -0.02 2.22 16 38 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.08 2.08 6.37 -2.39 -0.02 2.06 16 Total: -1.00 -72.13 326.08 2.21 -69.92 By element: Atomic # 1 Polarization: 35.82 SS G_CDS: -0.22 Total: 35.59 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 5.52 Total: -1.31 kcal Atomic # 7 Polarization: -128.11 SS G_CDS: -5.07 Total: -133.18 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.06 Total: -23.47 kcal Atomic # 14 Polarization: 50.40 SS G_CDS: 2.05 Total: 52.45 kcal Total: -72.13 2.21 -69.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019439516.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.155 kcal (2) G-P(sol) polarization free energy of solvation -72.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds