Wall clock time and date at job start Mon Mar 30 2020 02:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39833 * 126.45818 * 2 1 4 4 C 1.35452 * 107.86515 * 180.02562 * 3 2 1 5 5 N 1.35534 * 108.87142 * 359.76818 * 4 3 2 6 6 C 1.46503 * 125.67668 * 180.25897 * 5 4 3 7 7 C 1.37649 * 108.64136 * 0.37749 * 5 4 3 8 8 C 1.46679 * 126.23083 * 179.89035 * 7 5 4 9 9 O 1.21697 * 119.99981 * 99.50236 * 8 7 5 10 10 N 1.34772 * 120.00128 * 279.50653 * 8 7 5 11 11 C 1.46499 * 120.00244 * 174.91418 * 10 8 7 12 12 H 1.08998 * 112.85066 * 336.19858 * 11 10 8 13 13 C 1.54057 * 113.61904 * 107.50377 * 11 10 8 14 14 C 1.53776 * 86.98751 * 139.97949 * 13 11 10 15 15 H 1.09000 * 113.61651 * 219.97875 * 14 13 11 16 16 N 1.46503 * 113.61273 * 89.15972 * 14 13 11 17 17 C 1.36936 * 119.99834 * 105.86798 * 16 14 13 18 18 H 1.08002 * 119.99906 * 359.97438 * 17 16 14 19 19 C 1.38814 * 120.00186 * 179.72663 * 17 16 14 20 20 N 1.31625 * 119.99411 * 0.27308 * 19 17 16 21 21 Si 1.86801 * 120.00139 * 180.27128 * 19 17 16 22 22 H 1.48504 * 109.46728 * 89.99824 * 21 19 17 23 23 H 1.48499 * 109.47042 * 209.99712 * 21 19 17 24 24 H 1.48499 * 109.47050 * 330.00122 * 21 19 17 25 25 C 1.53777 * 113.61782 * 204.99806 * 11 10 8 26 26 H 1.08997 * 109.47058 * 269.96094 * 1 2 3 27 27 H 1.09004 * 109.47255 * 29.96030 * 1 2 3 28 28 H 1.08995 * 109.47527 * 149.95632 * 1 2 3 29 29 H 1.08004 * 126.07029 * 0.04882 * 3 2 1 30 30 H 1.08002 * 125.56287 * 179.97438 * 4 3 2 31 31 H 1.08990 * 109.47471 * 275.10520 * 6 5 4 32 32 H 1.09004 * 109.46918 * 35.10636 * 6 5 4 33 33 H 1.09004 * 109.46776 * 155.10263 * 6 5 4 34 34 H 0.97010 * 120.00055 * 354.91417 * 10 8 7 35 35 H 1.08998 * 113.61104 * 25.47536 * 13 11 10 36 36 H 1.08998 * 113.69420 * 254.49566 * 13 11 10 37 37 H 0.97001 * 120.00083 * 285.86341 * 16 14 13 38 38 H 0.97007 * 119.99257 * 180.02562 * 20 19 17 39 39 H 1.09001 * 113.61452 * 105.46921 * 25 11 10 40 40 H 1.08999 * 113.61888 * 334.57029 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6217 0.6928 -0.0006 5 7 3.6283 -0.6625 0.0042 6 6 4.8225 -1.5111 0.0107 7 6 2.3262 -1.1089 -0.0006 8 6 1.8898 -2.5092 -0.0001 9 8 1.5381 -3.0366 1.0388 10 7 1.8783 -3.2119 -1.1500 11 6 1.5499 -4.6395 -1.1329 12 1 1.7372 -5.1054 -0.1654 13 6 0.1603 -4.9603 -1.7156 14 6 0.8092 -6.1899 -2.3726 15 1 0.4564 -6.3807 -3.3861 16 7 0.7872 -7.3867 -1.5279 17 6 -0.0801 -8.4081 -1.8101 18 1 -0.7482 -8.3312 -2.6552 19 6 -0.0970 -9.5445 -1.0132 20 7 0.7169 -9.6380 0.0170 21 14 -1.2748 -10.9411 -1.4027 22 1 -0.6169 -11.9005 -2.3258 23 1 -1.6475 -11.6394 -0.1462 24 1 -2.4962 -10.3937 -2.0459 25 6 2.1403 -5.4218 -2.3179 26 1 -0.3633 -0.0007 1.0276 27 1 -0.3634 0.8904 -0.5132 28 1 -0.3634 -0.8895 -0.5145 29 1 2.0136 2.1549 0.0007 30 1 4.4972 1.3252 -0.0011 31 1 5.1746 -1.6507 -1.0113 32 1 5.6040 -1.0341 0.6023 33 1 4.5774 -2.4799 0.4461 34 1 2.0874 -2.7724 -1.9892 35 1 -0.1946 -4.2190 -2.4316 36 1 -0.5843 -5.2109 -0.9600 37 1 1.3871 -7.4556 -0.7687 38 1 0.7053 -10.4323 0.5737 39 1 2.9932 -6.0447 -2.0483 40 1 2.3259 -4.8066 -3.1983 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020105637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:41 Heat of formation + Delta-G solvation = 44.695386 kcal Electronic energy + Delta-G solvation = -21171.407783 eV Core-core repulsion = 17988.020330 eV Total energy + Delta-G solvation = -3183.387453 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.47273 -39.47362 -37.77888 -34.03843 -33.83414 -32.64674 -30.42041 -29.67524 -28.28288 -25.46049 -25.12934 -24.49096 -23.16362 -21.69694 -20.36903 -19.55066 -18.55794 -17.50799 -17.36587 -16.25485 -15.71659 -15.36715 -14.88005 -14.71439 -14.22236 -13.95949 -13.45311 -13.35553 -13.26521 -13.08164 -12.90733 -12.71426 -12.16540 -12.13601 -12.04070 -11.98213 -11.67860 -11.58787 -10.88812 -10.80730 -10.29412 -10.16070 -10.05224 -9.74651 -9.66368 -8.92836 -8.73599 -8.67479 -8.17272 -7.01358 -5.79850 -3.09914 1.79931 2.27016 2.74326 2.97763 3.42770 3.44041 3.48081 3.50178 4.51936 4.55806 4.72485 4.87165 4.89443 5.03897 5.14002 5.18694 5.23120 5.24629 5.37290 5.46449 5.60759 5.72676 5.85794 5.94270 5.95619 5.99634 6.07425 6.16771 6.25316 6.34050 6.59781 6.70089 6.76308 6.77432 6.92260 7.01769 7.10515 7.61258 7.69203 8.27754 8.38372 9.49175 10.05076 10.39075 11.42375 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033925 B = 0.003392 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.146742 B = 8252.627625 C = 8485.317096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.115 4.115 3 C -0.201 4.201 4 C 0.001 3.999 5 N -0.424 5.424 6 C 0.068 3.932 7 C -0.041 4.041 8 C 0.586 3.414 9 O -0.522 6.522 10 N -0.707 5.707 11 C 0.124 3.876 12 H 0.113 0.887 13 C -0.183 4.183 14 C 0.171 3.829 15 H 0.068 0.932 16 N -0.706 5.706 17 C -0.245 4.245 18 H 0.073 0.927 19 C -0.011 4.011 20 N -0.930 5.930 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C -0.163 4.163 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.140 0.860 30 H 0.165 0.835 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.398 0.602 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.386 0.614 38 H 0.256 0.744 39 H 0.073 0.927 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.682 21.569 -3.865 23.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 C -0.226 4.226 4 C -0.132 4.132 5 N -0.100 5.100 6 C -0.073 4.073 7 C -0.154 4.154 8 C 0.370 3.630 9 O -0.396 6.396 10 N -0.357 5.357 11 C 0.020 3.980 12 H 0.131 0.869 13 C -0.225 4.225 14 C 0.058 3.942 15 H 0.086 0.914 16 N -0.344 5.344 17 C -0.376 4.376 18 H 0.091 0.909 19 C -0.208 4.208 20 N -0.578 5.578 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.206 1.206 25 C -0.202 4.202 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.158 0.842 30 H 0.183 0.817 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.232 0.768 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.220 0.780 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.630 20.728 -3.139 22.310 hybrid contribution -0.154 -0.442 -0.224 0.519 sum 7.476 20.286 -3.364 21.880 Atomic orbital electron populations 1.20197 0.89747 1.02081 1.02129 1.19776 0.95361 0.90960 1.06155 1.20661 0.91725 0.98403 1.11804 1.21833 0.99343 0.82474 1.09553 1.43823 1.05046 1.06272 1.54851 1.22137 0.85920 0.95670 1.03610 1.20218 0.83910 0.93827 1.17473 1.17172 0.78102 0.83557 0.84193 1.90881 1.46878 1.69754 1.32115 1.46206 1.69853 1.10825 1.08831 1.22768 0.97139 0.77955 1.00131 0.86894 1.24351 0.96697 1.00448 1.01036 1.20913 0.92242 0.86236 0.94775 0.91393 1.42194 1.45064 1.14742 1.32418 1.19269 1.13323 0.94950 1.10091 0.90904 1.24786 0.99683 0.98545 0.97742 1.69672 1.40276 1.29213 1.18642 0.86158 0.80446 0.82312 0.77067 1.21666 1.21725 1.20650 1.23879 1.00445 0.98909 0.97007 0.91481 0.91593 0.92114 0.84250 0.81726 0.90342 0.89456 0.89577 0.76818 0.91174 0.90880 0.78009 0.93371 0.90843 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.20 36.00 0.37 -0.61 16 2 C -0.11 -1.47 6.21 -104.16 -0.65 -2.12 16 3 C -0.20 -2.13 10.76 -39.98 -0.43 -2.56 16 4 C 0.00 0.01 11.38 -16.91 -0.19 -0.18 16 5 N -0.42 -4.63 3.16 -120.24 -0.38 -5.01 16 6 C 0.07 0.54 10.98 59.85 0.66 1.20 16 7 C -0.04 -0.56 6.63 -81.98 -0.54 -1.10 16 8 C 0.59 9.34 6.57 -12.85 -0.08 9.26 16 9 O -0.52 -10.72 16.75 5.19 0.09 -10.63 16 10 N -0.71 -9.79 5.35 -54.19 -0.29 -10.08 16 11 C 0.12 2.04 4.10 -66.98 -0.27 1.77 16 12 H 0.11 2.24 7.53 -51.93 -0.39 1.85 16 13 C -0.18 -3.24 7.70 -25.78 -0.20 -3.44 16 14 C 0.17 3.32 4.55 -67.12 -0.31 3.01 16 15 H 0.07 1.29 8.11 -51.93 -0.42 0.87 16 16 N -0.71 -17.58 5.31 -52.64 -0.28 -17.86 16 17 C -0.25 -6.78 9.97 -15.06 -0.15 -6.93 16 18 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 20 N -0.93 -28.20 13.06 55.49 0.72 -27.48 16 21 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 25 C -0.16 -2.51 7.57 -25.92 -0.20 -2.71 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.75 7.96 -51.93 -0.41 0.34 16 29 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 30 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.82 7.68 -51.93 -0.40 0.42 16 34 H 0.40 4.41 8.71 -40.82 -0.36 4.06 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 37 H 0.39 10.27 7.90 -40.82 -0.32 9.95 16 38 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.08 0.98 8.12 -51.93 -0.42 0.56 16 LS Contribution 341.88 15.07 5.15 5.15 Total: -1.00 -33.79 341.88 -8.18 -41.97 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -6.07 Total: 11.42 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -2.09 Total: -4.83 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: -0.22 Total: -60.43 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.79 -8.18 -41.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020105637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.664 kcal (2) G-P(sol) polarization free energy of solvation -33.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds