Wall clock time and date at job start Mon Mar 30 2020 02:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39833 * 126.45818 * 2 1 4 4 C 1.35452 * 107.86515 * 180.02562 * 3 2 1 5 5 N 1.35534 * 108.87142 * 359.76818 * 4 3 2 6 6 C 1.46503 * 125.67668 * 180.25897 * 5 4 3 7 7 C 1.37649 * 108.64136 * 0.37749 * 5 4 3 8 8 C 1.46679 * 126.23083 * 179.89035 * 7 5 4 9 9 O 1.21697 * 119.99981 * 99.50236 * 8 7 5 10 10 N 1.34772 * 120.00128 * 279.50653 * 8 7 5 11 11 C 1.46499 * 120.00244 * 174.91418 * 10 8 7 12 12 H 1.08998 * 112.85066 * 336.19858 * 11 10 8 13 13 C 1.54057 * 113.61904 * 107.50377 * 11 10 8 14 14 C 1.53776 * 86.98751 * 139.97949 * 13 11 10 15 15 H 1.09000 * 113.61651 * 219.97875 * 14 13 11 16 16 N 1.46503 * 113.61273 * 89.15972 * 14 13 11 17 17 C 1.36936 * 119.99834 * 105.86798 * 16 14 13 18 18 H 1.08002 * 119.99906 * 359.97438 * 17 16 14 19 19 C 1.38814 * 120.00186 * 179.72663 * 17 16 14 20 20 N 1.31625 * 119.99411 * 0.27308 * 19 17 16 21 21 Si 1.86801 * 120.00139 * 180.27128 * 19 17 16 22 22 H 1.48504 * 109.46728 * 89.99824 * 21 19 17 23 23 H 1.48499 * 109.47042 * 209.99712 * 21 19 17 24 24 H 1.48499 * 109.47050 * 330.00122 * 21 19 17 25 25 C 1.53777 * 113.61782 * 204.99806 * 11 10 8 26 26 H 1.08997 * 109.47058 * 269.96094 * 1 2 3 27 27 H 1.09004 * 109.47255 * 29.96030 * 1 2 3 28 28 H 1.08995 * 109.47527 * 149.95632 * 1 2 3 29 29 H 1.08004 * 126.07029 * 0.04882 * 3 2 1 30 30 H 1.08002 * 125.56287 * 179.97438 * 4 3 2 31 31 H 1.08990 * 109.47471 * 275.10520 * 6 5 4 32 32 H 1.09004 * 109.46918 * 35.10636 * 6 5 4 33 33 H 1.09004 * 109.46776 * 155.10263 * 6 5 4 34 34 H 0.97010 * 120.00055 * 354.91417 * 10 8 7 35 35 H 1.08998 * 113.61104 * 25.47536 * 13 11 10 36 36 H 1.08998 * 113.69420 * 254.49566 * 13 11 10 37 37 H 0.97001 * 120.00083 * 285.86341 * 16 14 13 38 38 H 0.97007 * 119.99257 * 180.02562 * 20 19 17 39 39 H 1.09001 * 113.61452 * 105.46921 * 25 11 10 40 40 H 1.08999 * 113.61888 * 334.57029 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6217 0.6928 -0.0006 5 7 3.6283 -0.6625 0.0042 6 6 4.8225 -1.5111 0.0107 7 6 2.3262 -1.1089 -0.0006 8 6 1.8898 -2.5092 -0.0001 9 8 1.5381 -3.0366 1.0388 10 7 1.8783 -3.2119 -1.1500 11 6 1.5499 -4.6395 -1.1329 12 1 1.7372 -5.1054 -0.1654 13 6 0.1603 -4.9603 -1.7156 14 6 0.8092 -6.1899 -2.3726 15 1 0.4564 -6.3807 -3.3861 16 7 0.7872 -7.3867 -1.5279 17 6 -0.0801 -8.4081 -1.8101 18 1 -0.7482 -8.3312 -2.6552 19 6 -0.0970 -9.5445 -1.0132 20 7 0.7169 -9.6380 0.0170 21 14 -1.2748 -10.9411 -1.4027 22 1 -0.6169 -11.9005 -2.3258 23 1 -1.6475 -11.6394 -0.1462 24 1 -2.4962 -10.3937 -2.0459 25 6 2.1403 -5.4218 -2.3179 26 1 -0.3633 -0.0007 1.0276 27 1 -0.3634 0.8904 -0.5132 28 1 -0.3634 -0.8895 -0.5145 29 1 2.0136 2.1549 0.0007 30 1 4.4972 1.3252 -0.0011 31 1 5.1746 -1.6507 -1.0113 32 1 5.6040 -1.0341 0.6023 33 1 4.5774 -2.4799 0.4461 34 1 2.0874 -2.7724 -1.9892 35 1 -0.1946 -4.2190 -2.4316 36 1 -0.5843 -5.2109 -0.9600 37 1 1.3871 -7.4556 -0.7687 38 1 0.7053 -10.4323 0.5737 39 1 2.9932 -6.0447 -2.0483 40 1 2.3259 -4.8066 -3.1983 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020105637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:41 Heat of formation + Delta-G solvation = 21.346656 kcal Electronic energy + Delta-G solvation = -21172.420260 eV Core-core repulsion = 17988.020330 eV Total energy + Delta-G solvation = -3184.399930 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.35850 -40.79703 -39.21961 -35.76666 -34.63506 -34.31217 -31.83314 -31.04378 -29.19696 -26.57320 -26.46150 -26.01851 -24.76986 -22.94875 -21.21562 -20.76408 -19.89771 -19.35509 -18.45233 -17.62403 -16.79850 -16.66921 -16.20446 -15.95353 -15.70700 -15.39203 -14.98284 -14.50045 -14.29254 -14.19653 -14.00747 -13.65771 -13.61760 -13.37879 -13.32432 -12.90253 -12.85273 -12.81409 -12.64216 -12.46449 -12.18145 -11.87797 -11.74905 -11.43166 -11.14696 -10.88356 -10.09882 -9.46141 -9.06294 -9.04338 -7.96852 -5.26656 0.88595 1.22926 1.46857 1.49103 1.57494 1.92169 1.97237 2.36857 2.54641 3.35113 3.58550 3.73496 3.79365 3.85796 3.87311 4.22804 4.26696 4.29350 4.34562 4.35565 4.40595 4.60742 4.74558 4.79005 4.79591 4.85802 4.96051 5.09422 5.12132 5.13743 5.19403 5.26410 5.44123 5.48871 5.61700 5.92493 6.05195 6.25532 6.38612 6.44861 7.09369 7.30393 8.06055 8.27454 9.26675 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033925 B = 0.003392 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.146742 B = 8252.627625 C = 8485.317096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.127 4.127 3 C -0.216 4.216 4 C 0.021 3.979 5 N -0.425 5.425 6 C 0.063 3.937 7 C -0.079 4.079 8 C 0.591 3.409 9 O -0.581 6.581 10 N -0.687 5.687 11 C 0.130 3.870 12 H 0.072 0.928 13 C -0.172 4.172 14 C 0.152 3.848 15 H 0.079 0.921 16 N -0.723 5.723 17 C -0.244 4.244 18 H 0.082 0.918 19 C -0.078 4.078 20 N -0.972 5.972 21 Si 0.976 3.024 22 H -0.284 1.284 23 H -0.299 1.299 24 H -0.268 1.268 25 C -0.133 4.133 26 H 0.058 0.942 27 H 0.090 0.910 28 H 0.045 0.955 29 H 0.162 0.838 30 H 0.207 0.793 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.061 0.939 34 H 0.416 0.584 35 H 0.104 0.896 36 H 0.035 0.965 37 H 0.372 0.628 38 H 0.251 0.749 39 H 0.066 0.934 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.683 24.065 -6.121 26.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C -0.239 4.239 4 C -0.113 4.113 5 N -0.101 5.101 6 C -0.078 4.078 7 C -0.192 4.192 8 C 0.377 3.623 9 O -0.459 6.459 10 N -0.337 5.337 11 C 0.025 3.975 12 H 0.090 0.910 13 C -0.214 4.214 14 C 0.041 3.959 15 H 0.097 0.903 16 N -0.361 5.361 17 C -0.376 4.376 18 H 0.100 0.900 19 C -0.270 4.270 20 N -0.622 5.622 21 Si 0.805 3.195 22 H -0.210 1.210 23 H -0.226 1.226 24 H -0.193 1.193 25 C -0.172 4.172 26 H 0.077 0.923 27 H 0.109 0.891 28 H 0.064 0.936 29 H 0.179 0.821 30 H 0.224 0.776 31 H 0.119 0.881 32 H 0.134 0.866 33 H 0.080 0.920 34 H 0.254 0.746 35 H 0.122 0.878 36 H 0.054 0.946 37 H 0.203 0.797 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.636 23.278 -5.485 25.427 hybrid contribution -0.435 -1.068 0.445 1.236 sum 8.201 22.210 -5.040 24.206 Atomic orbital electron populations 1.20218 0.89707 1.02535 1.01726 1.20104 0.95864 0.91686 1.05842 1.20988 0.91898 0.98829 1.12224 1.22539 1.00455 0.81944 1.06372 1.44052 1.04614 1.07194 1.54201 1.22354 0.85478 0.94566 1.05383 1.19904 0.85783 0.92365 1.21150 1.17547 0.76807 0.84476 0.83518 1.90847 1.49577 1.71314 1.34181 1.45953 1.68842 1.09561 1.09394 1.22367 0.96860 0.79459 0.98829 0.91002 1.24236 0.96193 1.00432 1.00540 1.21238 0.95314 0.85050 0.94320 0.90256 1.42389 1.44560 1.16179 1.32925 1.19715 1.12972 0.95340 1.09548 0.89989 1.25639 1.01894 1.01389 0.98090 1.69843 1.42522 1.29728 1.20110 0.85098 0.78772 0.79188 0.76449 1.21037 1.22573 1.19255 1.23704 0.97832 0.97882 0.97824 0.92338 0.89132 0.93605 0.82053 0.77610 0.88135 0.86648 0.92010 0.74615 0.87780 0.94646 0.79658 0.94044 0.91562 0.85632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.92 10.20 71.23 0.73 -1.20 16 2 C -0.13 -3.09 6.21 -19.57 -0.12 -3.21 16 3 C -0.22 -3.94 10.76 22.01 0.24 -3.71 16 4 C 0.02 0.31 11.38 83.48 0.95 1.26 16 5 N -0.43 -8.32 3.16 -534.31 -1.69 -10.00 16 6 C 0.06 0.85 10.98 127.77 1.40 2.26 16 7 C -0.08 -2.11 6.63 40.35 0.27 -1.84 16 8 C 0.59 19.24 6.57 86.45 0.57 19.81 16 9 O -0.58 -25.32 16.75 -4.34 -0.07 -25.39 16 10 N -0.69 -18.61 5.35 -443.56 -2.37 -20.98 16 11 C 0.13 4.32 4.10 45.61 0.19 4.51 16 12 H 0.07 3.06 7.53 -2.39 -0.02 3.04 16 13 C -0.17 -6.06 7.70 31.21 0.24 -5.82 16 14 C 0.15 5.77 4.55 45.52 0.21 5.98 16 15 H 0.08 2.85 8.11 -2.39 -0.02 2.83 16 16 N -0.72 -36.87 5.31 -320.44 -1.70 -38.57 16 17 C -0.24 -13.65 9.97 84.03 0.84 -12.81 16 18 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 19 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 20 N -0.97 -60.95 13.06 21.65 0.28 -60.67 16 21 Si 0.98 46.70 29.55 68.60 2.03 48.72 16 22 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 23 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 25 C -0.13 -3.88 7.57 31.12 0.24 -3.65 16 26 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.04 1.14 7.96 -2.39 -0.02 1.12 16 29 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 30 H 0.21 1.31 8.06 -2.91 -0.02 1.28 16 31 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.06 1.16 7.68 -2.39 -0.02 1.14 16 34 H 0.42 8.25 8.71 -92.70 -0.81 7.44 16 35 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 36 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.37 20.72 7.90 -92.71 -0.73 19.99 16 38 H 0.25 15.27 8.31 -92.70 -0.77 14.50 16 39 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.13 2.55 8.12 -2.39 -0.02 2.53 16 Total: -1.00 -77.81 341.88 2.19 -75.62 By element: Atomic # 1 Polarization: 34.26 SS G_CDS: -0.49 Total: 33.77 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: 6.21 Total: -2.50 kcal Atomic # 7 Polarization: -124.74 SS G_CDS: -5.48 Total: -130.23 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.07 Total: -25.39 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.72 kcal Total: -77.81 2.19 -75.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020105637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.966 kcal (2) G-P(sol) polarization free energy of solvation -77.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds