Wall clock time and date at job start Mon Mar 30 2020 02:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39829 * 126.45785 * 2 1 4 4 C 1.35455 * 107.86406 * 180.02562 * 3 2 1 5 5 N 1.35530 * 108.87377 * 0.26671 * 4 3 2 6 6 C 1.46498 * 125.68198 * 179.69594 * 5 4 3 7 7 C 1.37664 * 108.64149 * 359.57202 * 5 4 3 8 8 C 1.46669 * 126.23230 * 180.16358 * 7 5 4 9 9 O 1.21695 * 120.00163 * 261.76746 * 8 7 5 10 10 N 1.34778 * 119.99966 * 81.77075 * 8 7 5 11 11 C 1.46501 * 119.99907 * 184.99242 * 10 8 7 12 12 H 1.09003 * 112.84956 * 332.79093 * 11 10 8 13 13 C 1.53780 * 113.61531 * 104.09601 * 11 10 8 14 14 C 1.53784 * 87.08295 * 89.11508 * 13 11 10 15 15 H 1.08993 * 113.68653 * 139.99030 * 14 13 11 16 16 N 1.46497 * 113.61432 * 270.88712 * 14 13 11 17 17 C 1.36936 * 120.00120 * 181.77942 * 16 14 13 18 18 H 1.08002 * 119.99495 * 0.02562 * 17 16 14 19 19 C 1.38805 * 120.00259 * 179.97438 * 17 16 14 20 20 N 1.31620 * 119.99898 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00021 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47030 * 90.00497 * 21 19 17 23 23 H 1.48505 * 109.47405 * 209.99977 * 21 19 17 24 24 H 1.48499 * 109.47321 * 330.00480 * 21 19 17 25 25 C 1.53778 * 113.61611 * 201.59333 * 11 10 8 26 26 H 1.09007 * 109.47402 * 90.01404 * 1 2 3 27 27 H 1.09000 * 109.47679 * 210.02221 * 1 2 3 28 28 H 1.09003 * 109.47168 * 330.02295 * 1 2 3 29 29 H 1.08003 * 126.07293 * 359.97438 * 3 2 1 30 30 H 1.08001 * 125.56406 * 180.02562 * 4 3 2 31 31 H 1.09002 * 109.46664 * 95.19459 * 6 5 4 32 32 H 1.09000 * 109.47423 * 215.19520 * 6 5 4 33 33 H 1.08999 * 109.47228 * 335.19826 * 6 5 4 34 34 H 0.96992 * 120.00241 * 4.99223 * 10 8 7 35 35 H 1.09004 * 113.61470 * 203.66772 * 13 11 10 36 36 H 1.09004 * 113.61580 * 334.56813 * 13 11 10 37 37 H 0.97004 * 120.00116 * 1.77708 * 16 14 13 38 38 H 0.97009 * 119.99981 * 180.02562 * 20 19 17 39 39 H 1.09004 * 113.61171 * 25.42926 * 25 11 10 40 40 H 1.09001 * 113.61716 * 156.25171 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1246 0.0000 4 6 3.6217 0.6927 -0.0006 5 7 3.6284 -0.6625 -0.0069 6 6 4.8225 -1.5112 -0.0159 7 6 2.3261 -1.1090 -0.0007 8 6 1.8897 -2.5092 -0.0011 9 8 1.5590 -3.0433 -1.0434 10 7 1.8550 -3.2046 1.1530 11 6 1.5249 -4.6318 1.1386 12 1 0.8949 -4.9120 0.2944 13 6 2.7449 -5.5482 1.3300 14 6 2.4839 -5.4486 2.8422 15 1 2.6285 -6.3888 3.3744 16 7 3.1662 -4.3215 3.4825 17 6 3.0534 -4.1310 4.8339 18 1 2.4617 -4.8120 5.4276 19 6 3.7004 -3.0634 5.4407 20 7 4.4219 -2.2337 4.7172 21 14 3.5459 -2.8032 7.2840 22 1 4.6337 -3.5362 7.9803 23 1 3.6511 -1.3538 7.5900 24 1 2.2303 -3.3126 7.7474 25 6 1.0150 -5.1599 2.4898 26 1 -0.3634 -0.0003 -1.0277 27 1 -0.3634 -0.8898 0.5142 28 1 -0.3634 0.8902 0.5135 29 1 2.0137 2.1549 -0.0004 30 1 4.4972 1.3251 -0.0003 31 1 5.0689 -1.8022 1.0053 32 1 4.6297 -2.4034 -0.6115 33 1 5.6572 -0.9593 -0.4479 34 1 2.0485 -2.7600 1.9930 35 1 2.6048 -6.5516 0.9277 36 1 3.6855 -5.0939 1.0184 37 1 3.6980 -3.7101 2.9493 38 1 4.8744 -1.4878 5.1413 39 1 0.5590 -4.3919 3.1147 40 1 0.4007 -6.0563 2.4047 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022013165.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:44 Heat of formation + Delta-G solvation = 46.170905 kcal Electronic energy + Delta-G solvation = -22204.929831 eV Core-core repulsion = 19021.606361 eV Total energy + Delta-G solvation = -3183.323470 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.10143 -39.48492 -37.64189 -33.66100 -33.45358 -32.55074 -30.16441 -29.74199 -27.95643 -25.31536 -25.04227 -24.46404 -23.16068 -21.39555 -19.98563 -19.17476 -18.56391 -17.40416 -17.05969 -16.01653 -15.31230 -15.02280 -14.73406 -14.69465 -14.14393 -13.92389 -13.39380 -13.25358 -13.08376 -12.99871 -12.79496 -12.55931 -12.02111 -11.81831 -11.73976 -11.69062 -11.45494 -11.30103 -10.96384 -10.86954 -10.39439 -10.25432 -9.87421 -9.69136 -9.61736 -8.98349 -8.57965 -8.26968 -7.79203 -7.10389 -5.91117 -3.20354 2.17920 2.60504 3.11191 3.31444 3.36258 3.42521 3.43442 3.71948 4.48290 4.92044 5.03119 5.10076 5.19437 5.26946 5.37569 5.39823 5.47088 5.47852 5.56686 5.69889 5.73863 5.88676 5.91754 5.94913 6.08895 6.21012 6.25699 6.30324 6.30722 6.55220 6.59124 6.63432 6.81099 7.05809 7.13870 7.31916 7.50705 7.62561 7.96096 8.27996 8.53894 9.39315 9.93716 10.28646 11.31021 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014229 B = 0.006657 C = 0.005403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.348946 B = 4205.036047 C = 5180.708888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.120 4.120 3 C -0.204 4.204 4 C 0.006 3.994 5 N -0.414 5.414 6 C 0.066 3.934 7 C -0.037 4.037 8 C 0.594 3.406 9 O -0.544 6.544 10 N -0.688 5.688 11 C 0.123 3.877 12 H 0.090 0.910 13 C -0.162 4.162 14 C 0.162 3.838 15 H 0.052 0.948 16 N -0.709 5.709 17 C -0.243 4.243 18 H 0.073 0.927 19 C -0.009 4.009 20 N -0.931 5.931 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.281 1.281 25 C -0.178 4.178 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.137 0.863 30 H 0.164 0.836 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.418 0.582 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.383 0.617 38 H 0.256 0.744 39 H 0.076 0.924 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.518 2.056 -9.054 9.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C -0.229 4.229 4 C -0.127 4.127 5 N -0.089 5.089 6 C -0.076 4.076 7 C -0.151 4.151 8 C 0.378 3.622 9 O -0.421 6.421 10 N -0.341 5.341 11 C 0.018 3.982 12 H 0.108 0.892 13 C -0.202 4.202 14 C 0.051 3.949 15 H 0.070 0.930 16 N -0.351 5.351 17 C -0.374 4.374 18 H 0.091 0.909 19 C -0.206 4.206 20 N -0.579 5.579 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 C -0.219 4.219 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.155 0.845 30 H 0.181 0.819 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.258 0.742 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.218 0.782 38 H 0.066 0.934 39 H 0.094 0.906 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.434 1.410 -9.585 9.990 hybrid contribution 0.416 0.677 1.338 1.556 sum -2.018 2.087 -8.247 8.743 Atomic orbital electron populations 1.20150 0.90109 1.01992 1.01509 1.19673 0.95106 0.91061 1.06899 1.20569 0.91761 0.98183 1.12351 1.21801 0.99259 0.82546 1.09132 1.43742 1.05012 1.06235 1.53866 1.22192 0.85525 0.94998 1.04855 1.19995 0.84113 0.93499 1.17497 1.17152 0.77498 0.83688 0.83860 1.90776 1.49043 1.70115 1.32160 1.46013 1.68600 1.09594 1.09892 1.21771 0.97227 0.80068 0.99133 0.89150 1.23711 0.98517 0.99587 0.98348 1.21213 0.90754 0.92188 0.90754 0.92987 1.42228 1.57809 1.29316 1.05761 1.19216 1.25581 1.08714 0.83870 0.90925 1.24728 0.99931 0.97861 0.98034 1.69628 1.36232 1.17477 1.34536 0.86177 0.77682 0.77014 0.85210 1.21714 1.21752 1.20698 1.24044 1.00943 1.01027 0.95907 0.91894 0.92402 0.91673 0.84477 0.81859 0.89018 0.90310 0.89552 0.74233 0.89333 0.91562 0.78247 0.93422 0.90562 0.90008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.16 10.20 36.01 0.37 -0.79 16 2 C -0.12 -2.00 6.21 -104.16 -0.65 -2.65 16 3 C -0.20 -3.04 10.76 -39.98 -0.43 -3.47 16 4 C 0.01 0.09 11.37 -16.91 -0.19 -0.10 16 5 N -0.41 -6.64 3.16 -120.24 -0.38 -7.02 16 6 C 0.07 0.89 10.88 59.85 0.65 1.55 16 7 C -0.04 -0.67 6.63 -81.98 -0.54 -1.21 16 8 C 0.59 11.22 6.76 -12.86 -0.09 11.13 16 9 O -0.54 -11.45 16.73 5.19 0.09 -11.36 16 10 N -0.69 -12.59 4.96 -54.33 -0.27 -12.86 16 11 C 0.12 2.09 4.31 -67.12 -0.29 1.80 16 12 H 0.09 1.51 7.49 -51.93 -0.39 1.12 16 13 C -0.16 -2.64 7.57 -25.92 -0.20 -2.84 16 14 C 0.16 3.04 4.54 -67.12 -0.30 2.74 16 15 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 16 N -0.71 -16.34 4.36 -52.64 -0.23 -16.57 16 17 C -0.24 -6.30 9.99 -15.06 -0.15 -6.45 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 20 N -0.93 -26.00 13.06 55.49 0.72 -25.28 16 21 Si 0.91 21.50 29.55 -169.99 -5.02 16.48 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C -0.18 -2.98 7.61 -25.92 -0.20 -3.18 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.87 7.96 -51.93 -0.41 0.45 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.14 1.69 8.06 -52.48 -0.42 1.26 16 30 H 0.16 1.78 8.06 -52.49 -0.42 1.36 16 31 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.08 1.08 7.95 -51.93 -0.41 0.66 16 33 H 0.09 0.89 8.12 -51.93 -0.42 0.47 16 34 H 0.42 8.44 7.20 -40.82 -0.29 8.15 16 35 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.14 8.13 -51.93 -0.42 0.72 16 37 H 0.38 9.28 7.07 -40.82 -0.29 8.99 16 38 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 39 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 338.66 15.07 5.10 5.10 Total: -1.00 -30.28 338.66 -8.10 -38.37 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: -5.99 Total: 16.95 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -2.11 Total: -3.82 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: -0.15 Total: -61.73 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.28 -8.10 -38.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022013165.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.544 kcal (2) G-P(sol) polarization free energy of solvation -30.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds