Wall clock time and date at job start Mon Mar 30 2020 02:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39829 * 126.45785 * 2 1 4 4 C 1.35455 * 107.86406 * 180.02562 * 3 2 1 5 5 N 1.35530 * 108.87377 * 0.26671 * 4 3 2 6 6 C 1.46498 * 125.68198 * 179.69594 * 5 4 3 7 7 C 1.37664 * 108.64149 * 359.57202 * 5 4 3 8 8 C 1.46669 * 126.23230 * 180.16358 * 7 5 4 9 9 O 1.21695 * 120.00163 * 261.76746 * 8 7 5 10 10 N 1.34778 * 119.99966 * 81.77075 * 8 7 5 11 11 C 1.46501 * 119.99907 * 184.99242 * 10 8 7 12 12 H 1.09003 * 112.84956 * 332.79093 * 11 10 8 13 13 C 1.53780 * 113.61531 * 104.09601 * 11 10 8 14 14 C 1.53784 * 87.08295 * 89.11508 * 13 11 10 15 15 H 1.08993 * 113.68653 * 139.99030 * 14 13 11 16 16 N 1.46497 * 113.61432 * 270.88712 * 14 13 11 17 17 C 1.36936 * 120.00120 * 181.77942 * 16 14 13 18 18 H 1.08002 * 119.99495 * 0.02562 * 17 16 14 19 19 C 1.38805 * 120.00259 * 179.97438 * 17 16 14 20 20 N 1.31620 * 119.99898 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00021 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47030 * 90.00497 * 21 19 17 23 23 H 1.48505 * 109.47405 * 209.99977 * 21 19 17 24 24 H 1.48499 * 109.47321 * 330.00480 * 21 19 17 25 25 C 1.53778 * 113.61611 * 201.59333 * 11 10 8 26 26 H 1.09007 * 109.47402 * 90.01404 * 1 2 3 27 27 H 1.09000 * 109.47679 * 210.02221 * 1 2 3 28 28 H 1.09003 * 109.47168 * 330.02295 * 1 2 3 29 29 H 1.08003 * 126.07293 * 359.97438 * 3 2 1 30 30 H 1.08001 * 125.56406 * 180.02562 * 4 3 2 31 31 H 1.09002 * 109.46664 * 95.19459 * 6 5 4 32 32 H 1.09000 * 109.47423 * 215.19520 * 6 5 4 33 33 H 1.08999 * 109.47228 * 335.19826 * 6 5 4 34 34 H 0.96992 * 120.00241 * 4.99223 * 10 8 7 35 35 H 1.09004 * 113.61470 * 203.66772 * 13 11 10 36 36 H 1.09004 * 113.61580 * 334.56813 * 13 11 10 37 37 H 0.97004 * 120.00116 * 1.77708 * 16 14 13 38 38 H 0.97009 * 119.99981 * 180.02562 * 20 19 17 39 39 H 1.09004 * 113.61171 * 25.42926 * 25 11 10 40 40 H 1.09001 * 113.61716 * 156.25171 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1246 0.0000 4 6 3.6217 0.6927 -0.0006 5 7 3.6284 -0.6625 -0.0069 6 6 4.8225 -1.5112 -0.0159 7 6 2.3261 -1.1090 -0.0007 8 6 1.8897 -2.5092 -0.0011 9 8 1.5590 -3.0433 -1.0434 10 7 1.8550 -3.2046 1.1530 11 6 1.5249 -4.6318 1.1386 12 1 0.8949 -4.9120 0.2944 13 6 2.7449 -5.5482 1.3300 14 6 2.4839 -5.4486 2.8422 15 1 2.6285 -6.3888 3.3744 16 7 3.1662 -4.3215 3.4825 17 6 3.0534 -4.1310 4.8339 18 1 2.4617 -4.8120 5.4276 19 6 3.7004 -3.0634 5.4407 20 7 4.4219 -2.2337 4.7172 21 14 3.5459 -2.8032 7.2840 22 1 4.6337 -3.5362 7.9803 23 1 3.6511 -1.3538 7.5900 24 1 2.2303 -3.3126 7.7474 25 6 1.0150 -5.1599 2.4898 26 1 -0.3634 -0.0003 -1.0277 27 1 -0.3634 -0.8898 0.5142 28 1 -0.3634 0.8902 0.5135 29 1 2.0137 2.1549 -0.0004 30 1 4.4972 1.3251 -0.0003 31 1 5.0689 -1.8022 1.0053 32 1 4.6297 -2.4034 -0.6115 33 1 5.6572 -0.9593 -0.4479 34 1 2.0485 -2.7600 1.9930 35 1 2.6048 -6.5516 0.9277 36 1 3.6855 -5.0939 1.0184 37 1 3.6980 -3.7101 2.9493 38 1 4.8744 -1.4878 5.1413 39 1 0.5590 -4.3919 3.1147 40 1 0.4007 -6.0563 2.4047 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022013165.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:43 Heat of formation + Delta-G solvation = 27.782050 kcal Electronic energy + Delta-G solvation = -22205.727231 eV Core-core repulsion = 19021.606361 eV Total energy + Delta-G solvation = -3184.120870 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.32519 -40.90168 -39.13535 -35.47872 -34.61435 -34.12233 -31.86824 -31.06120 -29.16933 -26.76482 -26.31139 -26.05367 -24.70902 -22.83335 -21.16048 -20.59595 -19.97875 -19.18534 -18.45119 -17.43308 -16.73147 -16.53229 -16.19992 -16.05402 -15.60797 -15.49903 -15.04717 -14.84561 -14.30319 -14.17427 -13.97776 -13.65813 -13.39727 -13.34762 -13.09766 -12.88833 -12.84601 -12.80355 -12.58455 -12.46787 -12.14749 -11.94419 -11.74446 -11.20949 -11.11034 -10.83450 -10.04784 -9.43959 -9.03246 -8.98193 -7.94297 -5.22098 0.90934 1.26985 1.48344 1.49474 1.56757 1.94734 2.04550 2.38558 2.56233 3.38419 3.62360 3.73859 3.83712 3.87576 3.97073 4.18449 4.22021 4.29466 4.33903 4.38386 4.41323 4.61386 4.80686 4.82037 4.84738 4.86893 4.94144 5.03700 5.09252 5.14533 5.21655 5.35122 5.44113 5.52129 5.66580 5.96130 6.09885 6.28239 6.39685 6.46150 7.05847 7.35059 8.07789 8.32141 9.27630 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014229 B = 0.006657 C = 0.005403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.348946 B = 4205.036047 C = 5180.708888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.133 4.133 3 C -0.216 4.216 4 C 0.012 3.988 5 N -0.422 5.422 6 C 0.067 3.933 7 C -0.081 4.081 8 C 0.598 3.402 9 O -0.572 6.572 10 N -0.687 5.687 11 C 0.118 3.882 12 H 0.097 0.903 13 C -0.146 4.146 14 C 0.145 3.855 15 H 0.057 0.943 16 N -0.718 5.718 17 C -0.239 4.239 18 H 0.075 0.925 19 C -0.065 4.065 20 N -0.958 5.958 21 Si 0.965 3.035 22 H -0.291 1.291 23 H -0.299 1.299 24 H -0.273 1.273 25 C -0.161 4.161 26 H 0.070 0.930 27 H 0.043 0.957 28 H 0.085 0.915 29 H 0.163 0.837 30 H 0.201 0.799 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.123 0.877 34 H 0.409 0.591 35 H 0.123 0.877 36 H 0.052 0.948 37 H 0.374 0.626 38 H 0.249 0.751 39 H 0.054 0.946 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.783 2.058 -9.253 9.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.141 4.141 3 C -0.240 4.240 4 C -0.122 4.122 5 N -0.096 5.096 6 C -0.074 4.074 7 C -0.194 4.194 8 C 0.384 3.616 9 O -0.451 6.451 10 N -0.337 5.337 11 C 0.013 3.987 12 H 0.115 0.885 13 C -0.185 4.185 14 C 0.036 3.964 15 H 0.075 0.925 16 N -0.359 5.359 17 C -0.371 4.371 18 H 0.093 0.907 19 C -0.258 4.258 20 N -0.608 5.608 21 Si 0.795 3.205 22 H -0.218 1.218 23 H -0.226 1.226 24 H -0.198 1.198 25 C -0.202 4.202 26 H 0.089 0.911 27 H 0.062 0.938 28 H 0.104 0.896 29 H 0.181 0.819 30 H 0.217 0.783 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.141 0.859 34 H 0.246 0.754 35 H 0.141 0.859 36 H 0.071 0.929 37 H 0.207 0.793 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.728 1.358 -9.787 10.250 hybrid contribution 0.480 0.639 1.374 1.590 sum -2.248 1.997 -8.413 8.934 Atomic orbital electron populations 1.20193 0.89082 1.02281 1.02092 1.20148 0.96245 0.91477 1.06202 1.20957 0.91741 0.98951 1.12309 1.22512 1.00609 0.82154 1.06946 1.43966 1.04794 1.07102 1.53773 1.22248 0.86030 0.95376 1.03704 1.20078 0.85566 0.93270 1.20460 1.17305 0.76755 0.84149 0.83392 1.90738 1.50547 1.70952 1.32894 1.46061 1.68212 1.10207 1.09263 1.21923 0.97786 0.79538 0.99455 0.88535 1.23688 0.97524 1.01103 0.96185 1.21470 0.91894 0.90893 0.92151 0.92483 1.42323 1.58268 1.30352 1.04973 1.19510 1.24284 1.08066 0.85248 0.90705 1.25384 1.00684 0.98313 1.01402 1.69763 1.37531 1.17949 1.35549 0.85276 0.77748 0.76185 0.81311 1.21799 1.22574 1.19804 1.23952 0.99624 1.01710 0.94912 0.91114 0.93799 0.89633 0.81918 0.78251 0.91119 0.90950 0.85872 0.75370 0.85874 0.92878 0.79280 0.94167 0.92710 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.25 10.20 71.24 0.73 -1.52 16 2 C -0.13 -4.38 6.21 -19.57 -0.12 -4.50 16 3 C -0.22 -6.08 10.76 22.01 0.24 -5.84 16 4 C 0.01 0.31 11.37 83.48 0.95 1.26 16 5 N -0.42 -13.34 3.16 -534.32 -1.69 -15.03 16 6 C 0.07 1.82 10.88 127.77 1.39 3.21 16 7 C -0.08 -2.92 6.63 40.34 0.27 -2.66 16 8 C 0.60 23.05 6.76 86.44 0.58 23.63 16 9 O -0.57 -24.40 16.73 -4.33 -0.07 -24.48 16 10 N -0.69 -25.53 4.96 -444.00 -2.20 -27.73 16 11 C 0.12 3.88 4.31 45.52 0.20 4.08 16 12 H 0.10 3.10 7.49 -2.39 -0.02 3.08 16 13 C -0.15 -4.53 7.57 31.12 0.24 -4.30 16 14 C 0.15 5.29 4.54 45.52 0.21 5.49 16 15 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 16 N -0.72 -33.20 4.36 -320.45 -1.40 -34.60 16 17 C -0.24 -12.40 9.99 84.03 0.84 -11.56 16 18 H 0.08 3.77 7.83 -2.91 -0.02 3.75 16 19 C -0.06 -3.49 5.50 84.86 0.47 -3.02 16 20 N -0.96 -54.35 13.06 21.65 0.28 -54.07 16 21 Si 0.96 44.36 29.55 68.60 2.03 46.39 16 22 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 23 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 25 C -0.16 -5.15 7.61 31.12 0.24 -4.91 16 26 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 27 H 0.04 1.33 7.96 -2.39 -0.02 1.31 16 28 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.16 3.59 8.06 -2.91 -0.02 3.56 16 30 H 0.20 3.71 8.06 -2.91 -0.02 3.69 16 31 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.07 2.01 7.95 -2.39 -0.02 1.99 16 33 H 0.12 2.33 8.12 -2.39 -0.02 2.31 16 34 H 0.41 17.01 7.20 -92.71 -0.67 16.34 16 35 H 0.12 2.98 8.14 -2.38 -0.02 2.96 16 36 H 0.05 1.80 8.13 -2.39 -0.02 1.79 16 37 H 0.37 18.51 7.07 -92.71 -0.66 17.85 16 38 H 0.25 13.96 8.31 -92.70 -0.77 13.19 16 39 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 40 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -65.47 338.66 2.89 -62.58 By element: Atomic # 1 Polarization: 47.84 SS G_CDS: -0.27 Total: 47.57 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 6.21 Total: -0.64 kcal Atomic # 7 Polarization: -126.42 SS G_CDS: -5.01 Total: -131.43 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.07 Total: -24.48 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -65.47 2.89 -62.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022013165.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.366 kcal (2) G-P(sol) polarization free energy of solvation -65.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds