Wall clock time and date at job start Mon Mar 30 2020 02:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35453 * 125.56440 * 2 1 4 4 C 1.39828 * 107.86576 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.45760 * 180.02562 * 4 3 2 6 6 C 1.37870 * 107.08722 * 359.75451 * 4 3 2 7 7 C 1.46684 * 126.23813 * 180.23386 * 6 4 3 8 8 O 1.21696 * 119.99201 * 0.20358 * 7 6 4 9 9 N 1.34767 * 120.00109 * 180.20001 * 7 6 4 10 10 C 1.46504 * 120.00038 * 179.97438 * 9 7 6 11 11 H 1.09003 * 112.84488 * 25.33508 * 10 9 7 12 12 C 1.53776 * 113.61636 * 156.53115 * 10 9 7 13 13 C 1.53777 * 87.08344 * 139.98171 * 12 10 9 14 14 H 1.09005 * 113.61092 * 89.11513 * 13 12 10 15 15 N 1.46494 * 113.61933 * 219.93559 * 13 12 10 16 16 C 1.36932 * 120.00326 * 205.00421 * 15 13 12 17 17 H 1.07999 * 120.00216 * 359.97438 * 16 15 13 18 18 C 1.38810 * 120.00273 * 180.02562 * 16 15 13 19 19 N 1.31621 * 120.00066 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00173 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47408 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47400 * 119.99844 * 20 18 16 23 23 H 1.48504 * 109.47482 * 239.99933 * 20 18 16 24 24 C 1.53775 * 113.61625 * 254.14282 * 10 9 7 25 25 N 1.35537 * 125.56444 * 179.97438 * 2 1 3 26 26 H 0.97001 * 125.67560 * 359.97438 * 25 2 1 27 27 H 1.09002 * 109.47495 * 270.02495 * 1 2 3 28 28 H 1.08998 * 109.47206 * 30.02833 * 1 2 3 29 29 H 1.09000 * 109.47244 * 150.02648 * 1 2 3 30 30 H 1.08003 * 126.06719 * 359.95041 * 3 2 1 31 31 H 1.08997 * 109.47280 * 89.97443 * 5 4 3 32 32 H 1.09001 * 109.47034 * 209.97636 * 5 4 3 33 33 H 1.08998 * 109.47175 * 329.97288 * 5 4 3 34 34 H 0.97004 * 120.00206 * 0.02562 * 9 7 6 35 35 H 1.09000 * 113.61898 * 254.53183 * 12 10 9 36 36 H 1.09009 * 113.61381 * 25.43760 * 12 10 9 37 37 H 0.97005 * 119.99920 * 24.99581 * 15 13 12 38 38 H 0.96999 * 119.99826 * 180.02562 * 19 18 16 39 39 H 1.09002 * 113.61649 * 334.56279 * 24 10 9 40 40 H 1.09001 * 113.62015 * 105.47292 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6269 0.6768 0.0006 5 6 4.8485 1.5592 0.0014 6 6 3.6122 -0.7018 0.0066 7 6 4.7859 -1.5815 0.0141 8 8 5.9048 -1.1029 0.0193 9 7 4.6253 -2.9196 0.0154 10 6 5.7976 -3.7981 0.0224 11 1 6.6787 -3.3247 0.4557 12 6 5.5128 -5.2009 0.5843 13 6 6.4183 -5.7464 -0.5326 14 1 7.4699 -5.8062 -0.2520 15 7 5.9205 -6.9828 -1.1404 16 6 6.7929 -7.8487 -1.7437 17 1 7.8481 -7.6201 -1.7717 18 6 6.3212 -9.0201 -2.3201 19 7 5.0352 -9.2986 -2.2865 20 14 7.5113 -10.2010 -3.1437 21 1 8.8912 -9.6606 -3.0475 22 1 7.4478 -11.5208 -2.4659 23 1 7.1412 -10.3604 -4.5730 24 6 6.0662 -4.4777 -1.3306 25 7 2.2953 -1.1025 0.0005 26 1 1.9833 -2.0210 0.0013 27 1 -0.3634 0.0004 1.0277 28 1 -0.3633 0.8897 -0.5143 29 1 -0.3634 -0.8902 -0.5134 30 1 1.9544 2.1269 -0.0008 31 1 5.1422 1.7722 1.0292 32 1 5.6645 1.0505 -0.5118 33 1 4.6223 2.4933 -0.5128 34 1 3.7334 -3.3010 0.0110 35 1 5.9118 -5.3593 1.5862 36 1 4.4706 -5.5060 0.4895 37 1 4.9727 -7.1881 -1.1155 38 1 4.7056 -10.1173 -2.6889 39 1 5.1756 -4.5847 -1.9500 40 1 6.9113 -4.0531 -1.8725 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022293175.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:30 Heat of formation + Delta-G solvation = 27.315304 kcal Electronic energy + Delta-G solvation = -20761.086825 eV Core-core repulsion = 17576.945715 eV Total energy + Delta-G solvation = -3184.141110 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.56242 -39.49787 -37.78332 -34.22840 -33.04773 -32.68938 -31.54853 -29.89394 -27.87763 -26.64724 -25.17014 -24.43636 -22.60112 -20.99787 -20.52978 -19.79815 -19.04078 -18.19016 -17.14265 -16.14545 -15.49004 -15.43503 -14.64300 -14.58668 -14.23857 -14.06138 -13.52869 -13.26114 -13.15831 -13.06992 -13.00720 -12.79482 -12.43060 -12.16296 -12.12124 -11.96637 -11.59546 -11.29756 -10.96610 -10.67476 -10.52213 -10.35984 -10.06343 -9.81506 -9.62929 -8.95983 -8.91423 -8.84370 -8.12194 -7.02430 -5.84009 -3.12883 1.36476 2.53078 2.88346 3.23906 3.38600 3.40099 3.46368 3.48182 4.55337 4.56506 4.78068 4.85855 5.02387 5.07027 5.18562 5.19528 5.27897 5.33578 5.44032 5.52414 5.62210 5.78031 5.81150 5.82792 5.89408 6.05602 6.07521 6.20095 6.26021 6.31529 6.44169 6.57969 6.64493 6.70017 6.83059 7.02984 7.21040 7.59532 7.66368 8.24779 8.34515 9.46042 10.02183 10.36686 11.38515 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029569 B = 0.003128 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.695724 B = 8950.070285 C = 9556.371166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.050 3.950 3 C -0.210 4.210 4 C -0.074 4.074 5 C -0.089 4.089 6 C -0.057 4.057 7 C 0.587 3.413 8 O -0.531 6.531 9 N -0.716 5.716 10 C 0.120 3.880 11 H 0.111 0.889 12 C -0.159 4.159 13 C 0.169 3.831 14 H 0.081 0.919 15 N -0.710 5.710 16 C -0.244 4.244 17 H 0.073 0.927 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.908 3.092 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.176 4.176 25 N -0.538 5.538 26 H 0.415 0.585 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.141 0.859 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.392 0.608 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.385 0.615 38 H 0.255 0.745 39 H 0.078 0.922 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.053 19.516 6.587 22.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.067 4.067 3 C -0.234 4.234 4 C -0.083 4.083 5 C -0.146 4.146 6 C -0.169 4.169 7 C 0.374 3.626 8 O -0.408 6.408 9 N -0.365 5.365 10 C 0.015 3.985 11 H 0.129 0.871 12 C -0.199 4.199 13 C 0.056 3.944 14 H 0.099 0.901 15 N -0.348 5.348 16 C -0.375 4.375 17 H 0.091 0.909 18 C -0.209 4.209 19 N -0.582 5.582 20 Si 0.739 3.261 21 H -0.204 1.204 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.219 4.219 25 N -0.135 5.135 26 H 0.252 0.748 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.159 0.841 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.225 0.775 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.219 0.781 38 H 0.065 0.935 39 H 0.097 0.903 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.070 19.529 6.510 22.110 hybrid contribution -0.541 -1.426 -0.537 1.617 sum -8.611 18.102 5.972 20.917 Atomic orbital electron populations 1.20411 0.87709 1.03633 1.02974 1.20507 0.93611 0.86256 1.06374 1.20554 0.91847 0.97861 1.13179 1.19931 0.95464 0.91103 1.01779 1.20335 0.94742 0.97448 1.02123 1.20301 0.82902 0.94302 1.19441 1.17073 0.87406 0.81624 0.76451 1.90793 1.24165 1.75079 1.50735 1.45960 1.09927 1.05577 1.75026 1.22519 0.88494 0.88266 0.99186 0.87080 1.23863 1.01777 0.94017 1.00214 1.21380 0.96326 0.85753 0.90898 0.90117 1.42358 1.07687 1.19092 1.65662 1.19369 0.90594 0.99145 1.28361 0.90877 1.24770 0.96061 0.98495 1.01581 1.69667 1.11923 1.26366 1.50202 0.86101 0.80078 0.80991 0.78929 1.20430 1.21811 1.21827 1.24366 1.01799 0.99388 0.96318 1.41901 1.05505 1.08442 1.57628 0.74807 0.90652 0.89812 0.91452 0.84130 0.91632 0.90061 0.92152 0.77517 0.91369 0.90135 0.78149 0.93497 0.90350 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.50 10.41 36.00 0.37 -0.12 16 2 C 0.05 0.45 7.13 -81.95 -0.58 -0.13 16 3 C -0.21 -2.17 10.66 -39.98 -0.43 -2.60 16 4 C -0.07 -0.93 6.21 -104.16 -0.65 -1.58 16 5 C -0.09 -1.04 9.82 36.01 0.35 -0.69 16 6 C -0.06 -0.74 7.06 -81.98 -0.58 -1.32 16 7 C 0.59 8.72 7.79 -12.86 -0.10 8.62 16 8 O -0.53 -9.45 14.43 5.19 0.07 -9.37 16 9 N -0.72 -9.52 5.36 -54.32 -0.29 -9.81 16 10 C 0.12 1.81 4.21 -67.12 -0.28 1.52 16 11 H 0.11 1.74 7.50 -51.93 -0.39 1.35 16 12 C -0.16 -2.47 7.58 -25.92 -0.20 -2.67 16 13 C 0.17 3.27 4.48 -67.03 -0.30 2.97 16 14 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 15 N -0.71 -17.40 5.41 -52.55 -0.28 -17.68 16 16 C -0.24 -6.68 9.97 -15.06 -0.15 -6.83 16 17 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -27.75 13.06 55.49 0.72 -27.03 16 20 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 C -0.18 -3.10 7.70 -25.83 -0.20 -3.30 16 25 N -0.54 -5.23 5.99 -5.69 -0.03 -5.26 16 26 H 0.41 2.98 8.19 -40.82 -0.33 2.64 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.14 1.16 8.06 -52.48 -0.42 0.73 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.10 6.50 -51.93 -0.34 0.76 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.39 4.23 7.84 -40.82 -0.32 3.91 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.22 8.09 -51.92 -0.42 0.80 16 37 H 0.38 9.90 7.92 -40.82 -0.32 9.58 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 337.10 15.07 5.08 5.08 Total: -1.00 -32.78 337.10 -8.48 -41.26 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -5.90 Total: 12.23 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -2.83 Total: -6.58 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: 0.12 Total: -59.78 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.07 Total: -9.37 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.78 -8.48 -41.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022293175.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.572 kcal (2) G-P(sol) polarization free energy of solvation -32.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds