Wall clock time and date at job start Mon Mar 30 2020 02:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35453 * 125.56440 * 2 1 4 4 C 1.39828 * 107.86576 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.45760 * 180.02562 * 4 3 2 6 6 C 1.37870 * 107.08722 * 359.75451 * 4 3 2 7 7 C 1.46684 * 126.23813 * 180.23386 * 6 4 3 8 8 O 1.21696 * 119.99201 * 0.20358 * 7 6 4 9 9 N 1.34767 * 120.00109 * 180.20001 * 7 6 4 10 10 C 1.46504 * 120.00038 * 179.97438 * 9 7 6 11 11 H 1.09003 * 112.84488 * 25.33508 * 10 9 7 12 12 C 1.53776 * 113.61636 * 156.53115 * 10 9 7 13 13 C 1.53777 * 87.08344 * 139.98171 * 12 10 9 14 14 H 1.09005 * 113.61092 * 89.11513 * 13 12 10 15 15 N 1.46494 * 113.61933 * 219.93559 * 13 12 10 16 16 C 1.36932 * 120.00326 * 205.00421 * 15 13 12 17 17 H 1.07999 * 120.00216 * 359.97438 * 16 15 13 18 18 C 1.38810 * 120.00273 * 180.02562 * 16 15 13 19 19 N 1.31621 * 120.00066 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00173 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47408 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47400 * 119.99844 * 20 18 16 23 23 H 1.48504 * 109.47482 * 239.99933 * 20 18 16 24 24 C 1.53775 * 113.61625 * 254.14282 * 10 9 7 25 25 N 1.35537 * 125.56444 * 179.97438 * 2 1 3 26 26 H 0.97001 * 125.67560 * 359.97438 * 25 2 1 27 27 H 1.09002 * 109.47495 * 270.02495 * 1 2 3 28 28 H 1.08998 * 109.47206 * 30.02833 * 1 2 3 29 29 H 1.09000 * 109.47244 * 150.02648 * 1 2 3 30 30 H 1.08003 * 126.06719 * 359.95041 * 3 2 1 31 31 H 1.08997 * 109.47280 * 89.97443 * 5 4 3 32 32 H 1.09001 * 109.47034 * 209.97636 * 5 4 3 33 33 H 1.08998 * 109.47175 * 329.97288 * 5 4 3 34 34 H 0.97004 * 120.00206 * 0.02562 * 9 7 6 35 35 H 1.09000 * 113.61898 * 254.53183 * 12 10 9 36 36 H 1.09009 * 113.61381 * 25.43760 * 12 10 9 37 37 H 0.97005 * 119.99920 * 24.99581 * 15 13 12 38 38 H 0.96999 * 119.99826 * 180.02562 * 19 18 16 39 39 H 1.09002 * 113.61649 * 334.56279 * 24 10 9 40 40 H 1.09001 * 113.62015 * 105.47292 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6269 0.6768 0.0006 5 6 4.8485 1.5592 0.0014 6 6 3.6122 -0.7018 0.0066 7 6 4.7859 -1.5815 0.0141 8 8 5.9048 -1.1029 0.0193 9 7 4.6253 -2.9196 0.0154 10 6 5.7976 -3.7981 0.0224 11 1 6.6787 -3.3247 0.4557 12 6 5.5128 -5.2009 0.5843 13 6 6.4183 -5.7464 -0.5326 14 1 7.4699 -5.8062 -0.2520 15 7 5.9205 -6.9828 -1.1404 16 6 6.7929 -7.8487 -1.7437 17 1 7.8481 -7.6201 -1.7717 18 6 6.3212 -9.0201 -2.3201 19 7 5.0352 -9.2986 -2.2865 20 14 7.5113 -10.2010 -3.1437 21 1 8.8912 -9.6606 -3.0475 22 1 7.4478 -11.5208 -2.4659 23 1 7.1412 -10.3604 -4.5730 24 6 6.0662 -4.4777 -1.3306 25 7 2.2953 -1.1025 0.0005 26 1 1.9833 -2.0210 0.0013 27 1 -0.3634 0.0004 1.0277 28 1 -0.3633 0.8897 -0.5143 29 1 -0.3634 -0.8902 -0.5134 30 1 1.9544 2.1269 -0.0008 31 1 5.1422 1.7722 1.0292 32 1 5.6645 1.0505 -0.5118 33 1 4.6223 2.4933 -0.5128 34 1 3.7334 -3.3010 0.0110 35 1 5.9118 -5.3593 1.5862 36 1 4.4706 -5.5060 0.4895 37 1 4.9727 -7.1881 -1.1155 38 1 4.7056 -10.1173 -2.6889 39 1 5.1756 -4.5847 -1.9500 40 1 6.9113 -4.0531 -1.8725 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022293175.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:29 Heat of formation + Delta-G solvation = 4.856004 kcal Electronic energy + Delta-G solvation = -20762.060733 eV Core-core repulsion = 17576.945715 eV Total energy + Delta-G solvation = -3185.115018 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.41311 -40.73731 -39.12826 -35.85566 -34.49132 -33.62030 -32.44448 -31.67286 -28.62926 -27.65185 -26.58696 -26.20205 -24.02921 -22.13353 -21.37305 -21.08976 -20.10486 -19.35359 -18.96911 -17.55211 -16.58214 -16.40161 -16.27907 -16.00576 -15.35253 -15.20837 -14.97889 -14.54409 -14.30241 -13.94060 -13.88605 -13.62983 -13.53997 -13.35758 -13.18581 -13.06452 -12.90962 -12.86512 -12.41988 -12.23113 -12.18208 -12.07879 -11.78928 -11.54347 -10.98444 -10.87699 -10.11837 -9.71539 -9.03196 -8.95260 -7.97622 -5.25676 0.42415 1.46960 1.47531 1.57461 1.73609 2.04916 2.20348 2.32009 2.55561 3.34260 3.63388 3.80954 3.87699 3.92785 3.96614 4.18244 4.25955 4.27842 4.29193 4.64069 4.69966 4.81237 4.83429 4.84469 4.85740 4.89516 4.95029 5.07460 5.11785 5.15933 5.21998 5.31386 5.48797 5.49374 5.61535 5.83144 5.97687 6.25146 6.45014 6.59471 7.13618 7.31817 8.06522 8.30252 9.25694 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029569 B = 0.003128 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.695724 B = 8950.070285 C = 9556.371166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.067 3.933 3 C -0.226 4.226 4 C -0.089 4.089 5 C -0.087 4.087 6 C -0.089 4.089 7 C 0.585 3.415 8 O -0.568 6.568 9 N -0.706 5.706 10 C 0.138 3.862 11 H 0.109 0.891 12 C -0.138 4.138 13 C 0.151 3.849 14 H 0.080 0.920 15 N -0.723 5.723 16 C -0.245 4.245 17 H 0.076 0.924 18 C -0.074 4.074 19 N -0.968 5.968 20 Si 0.971 3.029 21 H -0.267 1.267 22 H -0.292 1.292 23 H -0.295 1.295 24 C -0.171 4.171 25 N -0.530 5.530 26 H 0.426 0.574 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.078 0.922 30 H 0.161 0.839 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.405 0.595 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.376 0.624 38 H 0.251 0.749 39 H 0.069 0.931 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.348 20.548 7.155 24.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.052 4.052 3 C -0.249 4.249 4 C -0.098 4.098 5 C -0.144 4.144 6 C -0.201 4.201 7 C 0.375 3.625 8 O -0.448 6.448 9 N -0.356 5.356 10 C 0.032 3.968 11 H 0.127 0.873 12 C -0.178 4.178 13 C 0.041 3.959 14 H 0.098 0.902 15 N -0.361 5.361 16 C -0.376 4.376 17 H 0.094 0.906 18 C -0.266 4.266 19 N -0.619 5.619 20 Si 0.800 3.200 21 H -0.192 1.192 22 H -0.219 1.219 23 H -0.222 1.222 24 C -0.213 4.213 25 N -0.128 5.128 26 H 0.265 0.735 27 H 0.108 0.892 28 H 0.117 0.883 29 H 0.097 0.903 30 H 0.179 0.821 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.241 0.759 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.208 0.792 38 H 0.060 0.940 39 H 0.087 0.913 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.366 20.583 7.100 23.702 hybrid contribution -0.189 -1.618 -0.693 1.770 sum -9.555 18.965 6.408 22.182 Atomic orbital electron populations 1.20567 0.84773 1.04963 1.04294 1.21148 0.95251 0.85524 1.03265 1.20856 0.90937 0.99390 1.13751 1.20268 0.96692 0.91298 1.01575 1.20303 0.93954 0.98019 1.02164 1.20027 0.83479 0.94218 1.22347 1.17367 0.87638 0.81911 0.75623 1.90769 1.25743 1.75722 1.52584 1.45774 1.10088 1.05111 1.74637 1.22181 0.89187 0.88370 0.97020 0.87335 1.23663 1.01322 0.93190 0.99621 1.21685 0.97149 0.84389 0.92711 0.90172 1.42494 1.06952 1.20395 1.66219 1.19733 0.91163 0.99394 1.27357 0.90602 1.25533 0.97592 1.00398 1.03108 1.69802 1.13529 1.26791 1.51757 0.85112 0.78702 0.78753 0.77438 1.19152 1.21927 1.22184 1.24204 1.01103 0.98746 0.97247 1.41901 1.04474 1.09413 1.57017 0.73481 0.89185 0.88345 0.90297 0.82125 0.91430 0.92538 0.90158 0.75903 0.89692 0.89401 0.79195 0.93982 0.91278 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.65 10.41 71.23 0.74 0.09 16 2 C 0.07 1.03 7.13 41.34 0.29 1.33 16 3 C -0.23 -4.18 10.66 22.01 0.23 -3.94 16 4 C -0.09 -2.16 6.21 -19.57 -0.12 -2.29 16 5 C -0.09 -2.02 9.82 71.24 0.70 -1.32 16 6 C -0.09 -2.22 7.06 40.35 0.28 -1.93 16 7 C 0.58 17.26 7.79 86.45 0.67 17.94 16 8 O -0.57 -20.61 14.43 -4.34 -0.06 -20.68 16 9 N -0.71 -18.14 5.36 -444.01 -2.38 -20.52 16 10 C 0.14 4.04 4.21 45.51 0.19 4.23 16 11 H 0.11 3.34 7.50 -2.39 -0.02 3.32 16 12 C -0.14 -4.10 7.58 31.12 0.24 -3.87 16 13 C 0.15 5.79 4.48 45.58 0.20 5.99 16 14 H 0.08 3.06 8.10 -2.38 -0.02 3.04 16 15 N -0.72 -35.54 5.41 -320.18 -1.73 -37.27 16 16 C -0.24 -13.44 9.97 84.03 0.84 -12.60 16 17 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 18 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 19 N -0.97 -58.24 13.06 21.65 0.28 -57.96 16 20 Si 0.97 45.84 29.55 68.60 2.03 47.87 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 23 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 24 C -0.17 -5.99 7.70 31.18 0.24 -5.75 16 25 N -0.53 -9.27 5.99 -171.93 -1.03 -10.30 16 26 H 0.43 5.17 8.19 -92.71 -0.76 4.41 16 27 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.06 1.59 6.50 -2.39 -0.02 1.57 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.41 8.14 7.84 -92.70 -0.73 7.41 16 35 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.09 2.52 8.09 -2.38 -0.02 2.50 16 37 H 0.38 19.52 7.92 -92.70 -0.73 18.79 16 38 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 39 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -71.05 337.10 0.95 -70.10 By element: Atomic # 1 Polarization: 35.75 SS G_CDS: -1.14 Total: 34.61 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: 4.98 Total: -5.86 kcal Atomic # 7 Polarization: -121.19 SS G_CDS: -4.86 Total: -126.05 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.06 Total: -20.68 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -71.05 0.95 -70.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022293175.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.961 kcal (2) G-P(sol) polarization free energy of solvation -71.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds