Wall clock time and date at job start Mon Mar 30 2020 01:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34660 * 125.79964 * 2 1 4 4 H 0.97003 * 124.84895 * 0.02562 * 3 2 1 5 5 C 1.36445 * 110.29626 * 180.29922 * 3 2 1 6 6 C 1.34479 * 108.85769 * 359.72292 * 5 3 2 7 7 C 1.36761 * 125.80261 * 179.82721 * 2 1 3 8 8 C 1.47265 * 126.94573 * 359.97438 * 7 2 1 9 9 O 1.21626 * 119.99760 * 359.71887 * 8 7 2 10 10 N 1.34777 * 120.00330 * 179.71032 * 8 7 2 11 11 C 1.46495 * 120.00044 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47171 * 185.08699 * 11 10 8 13 13 H 1.09001 * 109.87655 * 303.56457 * 12 11 10 14 14 C 1.54326 * 109.87875 * 64.57450 * 12 11 10 15 15 C 1.55157 * 102.94402 * 141.60853 * 14 12 11 16 16 C 1.54911 * 101.57905 * 324.50270 * 15 14 12 17 17 N 1.47020 * 109.88203 * 182.38161 * 12 11 10 18 18 C 1.36936 * 125.65196 * 61.61175 * 17 12 11 19 19 H 1.08001 * 119.99546 * 13.60038 * 18 17 12 20 20 C 1.38809 * 120.00351 * 193.60297 * 18 17 12 21 21 N 1.31626 * 119.99794 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00218 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47076 * 59.99453 * 22 20 18 24 24 H 1.48497 * 109.47302 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46844 * 299.99835 * 22 20 18 26 26 H 1.08996 * 109.47666 * 270.16513 * 1 2 3 27 27 H 1.09001 * 109.47022 * 30.17584 * 1 2 3 28 28 H 1.09007 * 109.46712 * 150.17065 * 1 2 3 29 29 H 1.08003 * 125.56708 * 179.75226 * 5 3 2 30 30 H 1.07999 * 126.83580 * 180.02562 * 6 5 3 31 31 H 0.96998 * 119.99706 * 359.97438 * 10 8 7 32 32 H 1.09006 * 109.47108 * 65.09089 * 11 10 8 33 33 H 1.08999 * 109.47523 * 305.09305 * 11 10 8 34 34 H 1.08998 * 110.72060 * 259.97476 * 14 12 11 35 35 H 1.09005 * 110.72244 * 23.24990 * 14 12 11 36 36 H 1.09005 * 111.00448 * 82.56662 * 15 14 12 37 37 H 1.08996 * 111.00769 * 206.42617 * 15 14 12 38 38 H 1.09003 * 110.36391 * 278.16714 * 16 15 14 39 39 H 1.09005 * 110.36777 * 155.85235 * 16 15 14 40 40 H 0.96998 * 119.99756 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9733 2.0074 0.0004 5 6 3.6095 0.7275 -0.0067 6 6 3.6882 -0.6150 -0.0050 7 6 2.3071 -1.1092 0.0033 8 6 1.8703 -2.5156 0.0081 9 8 0.6840 -2.7839 0.0146 10 7 2.7851 -3.5053 0.0051 11 6 2.3506 -4.9044 0.0093 12 6 3.5720 -5.8174 0.1326 13 1 4.2744 -5.6078 -0.6742 14 6 4.2583 -5.5945 1.4968 15 6 4.6900 -7.0273 1.9069 16 6 3.5192 -7.8759 1.3511 17 7 3.1513 -7.2252 0.0805 18 6 2.5214 -7.8314 -0.9735 19 1 2.4884 -7.3431 -1.9362 20 6 1.9251 -9.0735 -0.8045 21 7 1.9657 -9.6688 0.3687 22 14 1.0664 -9.9008 -2.2424 23 1 2.0402 -10.1169 -3.3426 24 1 0.5166 -11.2089 -1.8046 25 1 -0.0396 -9.0344 -2.7234 26 1 -0.3634 0.0030 1.0276 27 1 -0.3633 0.8884 -0.5166 28 1 -0.3633 -0.8916 -0.5112 29 1 4.4497 1.4061 -0.0120 30 1 4.5890 -1.2108 -0.0086 31 1 3.7311 -3.2913 -0.0005 32 1 1.8249 -5.1243 -0.9199 33 1 1.6827 -5.0749 0.8536 34 1 5.1274 -4.9456 1.3898 35 1 3.5544 -5.1821 2.2198 36 1 5.6317 -7.3026 1.4321 37 1 4.7591 -7.1193 2.9908 38 1 2.6772 -7.8599 2.0432 39 1 3.8449 -8.9007 1.1723 40 1 1.5494 -10.5369 0.4867 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027818375.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:19 Heat of formation + Delta-G solvation = 24.966687 kcal Electronic energy + Delta-G solvation = -21394.994908 eV Core-core repulsion = 18210.751954 eV Total energy + Delta-G solvation = -3184.242954 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.26292 -38.81837 -37.41806 -34.07751 -32.42332 -31.58321 -31.20055 -29.53690 -28.51275 -26.41673 -24.84254 -23.93308 -21.93967 -20.71249 -20.20032 -19.64916 -18.93624 -17.74988 -16.70628 -15.79391 -15.54043 -15.11876 -14.73158 -14.30293 -14.12388 -13.75069 -13.73262 -13.19955 -12.96739 -12.81993 -12.73613 -12.59776 -12.00496 -11.81695 -11.64493 -11.59054 -11.21194 -10.89288 -10.72262 -10.15358 -10.07129 -9.86078 -9.76768 -9.64641 -9.40735 -8.93623 -8.55742 -8.46478 -8.17114 -6.78345 -5.70468 -3.06721 1.83257 2.36443 3.02514 3.44911 3.49474 3.50687 3.84249 3.86333 4.54823 4.75443 4.89084 5.12103 5.22699 5.41644 5.47451 5.49728 5.57384 5.60107 5.70294 5.79149 5.89001 5.91849 6.15004 6.17829 6.24678 6.33379 6.53835 6.63592 6.68646 6.71666 6.84235 6.87054 6.97376 7.18679 7.32518 7.58455 7.66405 7.84800 8.07676 8.32061 8.78122 9.23617 9.84272 10.51717 11.41283 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023100 B = 0.004130 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.809224 B = 6778.464520 C = 7567.101036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.099 3.901 3 N -0.556 5.556 4 H 0.413 0.587 5 C -0.022 4.022 6 C -0.167 4.167 7 C -0.229 4.229 8 C 0.582 3.418 9 O -0.554 6.554 10 N -0.718 5.718 11 C 0.112 3.888 12 C 0.152 3.848 13 H 0.037 0.963 14 C -0.125 4.125 15 C -0.149 4.149 16 C 0.172 3.828 17 N -0.590 5.590 18 C -0.232 4.232 19 H 0.075 0.925 20 C -0.002 4.002 21 N -0.917 5.917 22 Si 0.911 3.089 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.283 1.283 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.167 0.833 30 H 0.145 0.855 31 H 0.394 0.606 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.025 0.975 39 H 0.074 0.926 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.720 20.895 1.477 21.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.018 4.018 3 N -0.152 5.152 4 H 0.250 0.750 5 C -0.149 4.149 6 C -0.192 4.192 7 C -0.239 4.239 8 C 0.370 3.630 9 O -0.434 6.434 10 N -0.368 5.368 11 C -0.014 4.014 12 C 0.044 3.956 13 H 0.054 0.946 14 C -0.163 4.163 15 C -0.188 4.188 16 C 0.047 3.953 17 N -0.314 5.314 18 C -0.360 4.360 19 H 0.093 0.907 20 C -0.199 4.199 21 N -0.564 5.564 22 Si 0.741 3.259 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.210 1.210 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.121 0.879 29 H 0.185 0.815 30 H 0.163 0.837 31 H 0.228 0.772 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.043 0.957 39 H 0.092 0.908 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.749 20.535 1.447 20.925 hybrid contribution -0.060 0.156 -0.708 0.728 sum 3.689 20.691 0.739 21.030 Atomic orbital electron populations 1.20570 0.87060 1.04144 1.03412 1.20352 0.93733 0.85639 1.02085 1.41576 1.06264 1.08282 1.59073 0.75037 1.21675 0.85622 0.96443 1.11178 1.22065 0.95958 0.93635 1.07527 1.20309 0.93118 0.92489 1.17943 1.17363 0.85560 0.83960 0.76088 1.90730 1.16724 1.84451 1.51533 1.45889 1.09262 1.06836 1.74859 1.22166 0.99166 0.77680 1.02342 1.21120 0.92896 0.86500 0.95123 0.94575 1.22598 0.99136 0.97387 0.97219 1.23009 1.00344 0.96048 0.99351 1.21470 0.91707 0.95954 0.86148 1.44479 1.68880 1.02560 1.15473 1.18956 1.27533 1.00772 0.88776 0.90677 1.24887 0.99805 0.98352 0.96867 1.69932 1.48344 1.16434 1.21645 0.86223 0.79676 0.78593 0.81436 1.21117 1.21597 1.20968 0.90538 0.92121 0.87850 0.81532 0.83745 0.77247 0.91724 0.91711 0.92440 0.91809 0.92354 0.92407 0.95739 0.90796 0.93619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.02 9.88 36.01 0.36 -0.66 16 2 C 0.10 1.19 7.17 -81.89 -0.59 0.60 16 3 N -0.56 -4.71 5.90 -9.11 -0.05 -4.76 16 4 H 0.41 2.03 8.96 -40.82 -0.37 1.66 16 5 C -0.02 -0.19 11.89 -16.83 -0.20 -0.39 16 6 C -0.17 -1.85 10.56 -37.50 -0.40 -2.25 16 7 C -0.23 -3.25 6.29 -103.35 -0.65 -3.90 16 8 C 0.58 10.28 7.81 -12.59 -0.10 10.19 16 9 O -0.55 -11.65 14.81 5.25 0.08 -11.58 16 10 N -0.72 -11.99 5.32 -61.43 -0.33 -12.32 16 11 C 0.11 2.28 5.07 -4.04 -0.02 2.26 16 12 C 0.15 3.11 3.22 -66.95 -0.22 2.90 16 13 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 14 C -0.13 -2.18 6.10 -24.90 -0.15 -2.33 16 15 C -0.15 -2.80 7.09 -24.58 -0.17 -2.98 16 16 C 0.17 4.19 5.43 -2.53 -0.01 4.18 16 17 N -0.59 -15.00 3.13 -162.57 -0.51 -15.51 16 18 C -0.23 -6.48 9.77 -15.06 -0.15 -6.63 16 19 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 20 C 0.00 -0.06 5.47 -17.43 -0.10 -0.16 16 21 N -0.92 -27.08 10.53 55.49 0.58 -26.50 16 22 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.10 1.40 6.47 -51.92 -0.34 1.07 16 29 H 0.17 0.85 8.06 -52.48 -0.42 0.42 16 30 H 0.14 1.33 7.70 -52.49 -0.40 0.92 16 31 H 0.39 5.43 7.46 -40.82 -0.30 5.12 16 32 H 0.06 1.48 7.92 -51.93 -0.41 1.07 16 33 H 0.06 1.47 8.08 -51.93 -0.42 1.05 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 1.11 7.81 -51.93 -0.41 0.71 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.02 0.65 8.08 -51.93 -0.42 0.23 16 39 H 0.07 1.99 6.85 -51.93 -0.36 1.64 16 40 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 328.68 15.07 4.95 4.95 Total: -1.00 -33.87 328.68 -8.62 -42.49 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.93 Total: 4.96 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -2.39 Total: 0.83 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: -0.30 Total: -59.08 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.08 Total: -11.58 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.87 -8.62 -42.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027818375.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.459 kcal (2) G-P(sol) polarization free energy of solvation -33.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds