Wall clock time and date at job start Mon Mar 30 2020 01:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34660 * 125.79964 * 2 1 4 4 H 0.97003 * 124.84895 * 0.02562 * 3 2 1 5 5 C 1.36445 * 110.29626 * 180.29922 * 3 2 1 6 6 C 1.34479 * 108.85769 * 359.72292 * 5 3 2 7 7 C 1.36761 * 125.80261 * 179.82721 * 2 1 3 8 8 C 1.47265 * 126.94573 * 359.97438 * 7 2 1 9 9 O 1.21626 * 119.99760 * 359.71887 * 8 7 2 10 10 N 1.34777 * 120.00330 * 179.71032 * 8 7 2 11 11 C 1.46495 * 120.00044 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47171 * 185.08699 * 11 10 8 13 13 H 1.09001 * 109.87655 * 303.56457 * 12 11 10 14 14 C 1.54326 * 109.87875 * 64.57450 * 12 11 10 15 15 C 1.55157 * 102.94402 * 141.60853 * 14 12 11 16 16 C 1.54911 * 101.57905 * 324.50270 * 15 14 12 17 17 N 1.47020 * 109.88203 * 182.38161 * 12 11 10 18 18 C 1.36936 * 125.65196 * 61.61175 * 17 12 11 19 19 H 1.08001 * 119.99546 * 13.60038 * 18 17 12 20 20 C 1.38809 * 120.00351 * 193.60297 * 18 17 12 21 21 N 1.31626 * 119.99794 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00218 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47076 * 59.99453 * 22 20 18 24 24 H 1.48497 * 109.47302 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46844 * 299.99835 * 22 20 18 26 26 H 1.08996 * 109.47666 * 270.16513 * 1 2 3 27 27 H 1.09001 * 109.47022 * 30.17584 * 1 2 3 28 28 H 1.09007 * 109.46712 * 150.17065 * 1 2 3 29 29 H 1.08003 * 125.56708 * 179.75226 * 5 3 2 30 30 H 1.07999 * 126.83580 * 180.02562 * 6 5 3 31 31 H 0.96998 * 119.99706 * 359.97438 * 10 8 7 32 32 H 1.09006 * 109.47108 * 65.09089 * 11 10 8 33 33 H 1.08999 * 109.47523 * 305.09305 * 11 10 8 34 34 H 1.08998 * 110.72060 * 259.97476 * 14 12 11 35 35 H 1.09005 * 110.72244 * 23.24990 * 14 12 11 36 36 H 1.09005 * 111.00448 * 82.56662 * 15 14 12 37 37 H 1.08996 * 111.00769 * 206.42617 * 15 14 12 38 38 H 1.09003 * 110.36391 * 278.16714 * 16 15 14 39 39 H 1.09005 * 110.36777 * 155.85235 * 16 15 14 40 40 H 0.96998 * 119.99756 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9733 2.0074 0.0004 5 6 3.6095 0.7275 -0.0067 6 6 3.6882 -0.6150 -0.0050 7 6 2.3071 -1.1092 0.0033 8 6 1.8703 -2.5156 0.0081 9 8 0.6840 -2.7839 0.0146 10 7 2.7851 -3.5053 0.0051 11 6 2.3506 -4.9044 0.0093 12 6 3.5720 -5.8174 0.1326 13 1 4.2744 -5.6078 -0.6742 14 6 4.2583 -5.5945 1.4968 15 6 4.6900 -7.0273 1.9069 16 6 3.5192 -7.8759 1.3511 17 7 3.1513 -7.2252 0.0805 18 6 2.5214 -7.8314 -0.9735 19 1 2.4884 -7.3431 -1.9362 20 6 1.9251 -9.0735 -0.8045 21 7 1.9657 -9.6688 0.3687 22 14 1.0664 -9.9008 -2.2424 23 1 2.0402 -10.1169 -3.3426 24 1 0.5166 -11.2089 -1.8046 25 1 -0.0396 -9.0344 -2.7234 26 1 -0.3634 0.0030 1.0276 27 1 -0.3633 0.8884 -0.5166 28 1 -0.3633 -0.8916 -0.5112 29 1 4.4497 1.4061 -0.0120 30 1 4.5890 -1.2108 -0.0086 31 1 3.7311 -3.2913 -0.0005 32 1 1.8249 -5.1243 -0.9199 33 1 1.6827 -5.0749 0.8536 34 1 5.1274 -4.9456 1.3898 35 1 3.5544 -5.1821 2.2198 36 1 5.6317 -7.3026 1.4321 37 1 4.7591 -7.1193 2.9908 38 1 2.6772 -7.8599 2.0432 39 1 3.8449 -8.9007 1.1723 40 1 1.5494 -10.5369 0.4867 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027818375.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:19 Heat of formation + Delta-G solvation = 1.032886 kcal Electronic energy + Delta-G solvation = -21396.032755 eV Core-core repulsion = 18210.751954 eV Total energy + Delta-G solvation = -3185.280801 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.11020 -40.26973 -39.09273 -35.67554 -34.38787 -32.42656 -32.20983 -31.34338 -30.15210 -27.38384 -26.66797 -25.62273 -23.17801 -21.97820 -21.52568 -21.18515 -20.37393 -18.75977 -18.45386 -17.26374 -16.97242 -16.53011 -16.33154 -15.83961 -15.61859 -15.35881 -14.65295 -14.43881 -14.26731 -13.99577 -13.90916 -13.63598 -13.57983 -13.40712 -13.35455 -12.95390 -12.85505 -12.64184 -12.44965 -12.05003 -11.84387 -11.69935 -11.46588 -11.39148 -10.85968 -10.66897 -10.08062 -9.66737 -9.06568 -8.86007 -7.87021 -5.24740 0.78844 1.44334 1.48291 1.53886 1.60552 2.17052 2.47728 2.62696 2.63856 3.32115 3.75419 3.95398 3.96100 4.01030 4.13866 4.27536 4.31543 4.38167 4.48567 4.57107 4.69411 4.72660 4.75034 4.97598 5.00451 5.03536 5.09806 5.15985 5.22606 5.32835 5.45644 5.47814 5.62850 5.68145 5.78741 5.84118 6.02758 6.24075 6.68256 6.81169 7.10072 7.44312 7.77163 8.43022 9.23474 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023100 B = 0.004130 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.809224 B = 6778.464520 C = 7567.101036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.095 3.905 3 N -0.537 5.537 4 H 0.433 0.567 5 C 0.001 3.999 6 C -0.187 4.187 7 C -0.269 4.269 8 C 0.575 3.425 9 O -0.601 6.601 10 N -0.705 5.705 11 C 0.133 3.867 12 C 0.149 3.851 13 H 0.051 0.949 14 C -0.112 4.112 15 C -0.133 4.133 16 C 0.173 3.827 17 N -0.612 5.612 18 C -0.242 4.242 19 H 0.076 0.924 20 C -0.059 4.059 21 N -0.946 5.946 22 Si 0.973 3.027 23 H -0.273 1.273 24 H -0.292 1.292 25 H -0.283 1.283 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.068 0.932 29 H 0.212 0.788 30 H 0.161 0.839 31 H 0.412 0.588 32 H 0.029 0.971 33 H 0.032 0.968 34 H 0.105 0.895 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.083 0.917 38 H -0.011 1.011 39 H 0.040 0.960 40 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.012 24.271 1.276 25.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.024 4.024 3 N -0.134 5.134 4 H 0.274 0.726 5 C -0.127 4.127 6 C -0.210 4.210 7 C -0.279 4.279 8 C 0.366 3.634 9 O -0.484 6.484 10 N -0.356 5.356 11 C 0.006 3.994 12 C 0.042 3.958 13 H 0.069 0.931 14 C -0.149 4.149 15 C -0.171 4.171 16 C 0.048 3.952 17 N -0.336 5.336 18 C -0.371 4.371 19 H 0.093 0.907 20 C -0.253 4.253 21 N -0.594 5.594 22 Si 0.801 3.199 23 H -0.198 1.198 24 H -0.218 1.218 25 H -0.210 1.210 26 H 0.097 0.903 27 H 0.112 0.888 28 H 0.087 0.913 29 H 0.228 0.772 30 H 0.178 0.822 31 H 0.249 0.751 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.123 0.877 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.007 0.993 39 H 0.058 0.942 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.096 23.986 1.240 24.779 hybrid contribution -0.774 -0.758 -0.654 1.266 sum 5.321 23.227 0.586 23.836 Atomic orbital electron populations 1.20512 0.86913 1.04053 1.03550 1.20420 0.94187 0.86297 1.01513 1.41582 1.06077 1.08505 1.57282 0.72645 1.22339 0.86327 0.96212 1.07781 1.22321 0.94885 0.95002 1.08804 1.20198 0.95671 0.90699 1.21354 1.18020 0.84915 0.85612 0.74861 1.90702 1.18705 1.85378 1.53644 1.45599 1.10228 1.05003 1.74802 1.21615 0.98465 0.80173 0.99099 1.21319 0.92814 0.83877 0.97824 0.93128 1.22579 1.00380 0.97291 0.94687 1.22876 0.98119 0.95340 1.00760 1.21293 0.92745 0.95607 0.85557 1.44758 1.68741 1.05017 1.15087 1.19283 1.27156 1.00935 0.89743 0.90663 1.25675 1.01025 0.99250 0.99357 1.70142 1.49397 1.16450 1.23431 0.85240 0.78606 0.77223 0.78819 1.19822 1.21768 1.20970 0.90308 0.88759 0.91315 0.77169 0.82162 0.75145 0.95232 0.94918 0.87687 0.91999 0.90939 0.89888 0.99276 0.94203 0.94294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.94 9.88 71.24 0.70 -1.24 16 2 C 0.10 2.12 7.17 41.78 0.30 2.42 16 3 N -0.54 -7.02 5.90 -182.73 -1.08 -8.10 16 4 H 0.43 2.29 8.96 -92.71 -0.83 1.46 16 5 C 0.00 0.01 11.89 83.12 0.99 1.00 16 6 C -0.19 -3.53 10.56 23.62 0.25 -3.28 16 7 C -0.27 -7.36 6.29 -19.04 -0.12 -7.48 16 8 C 0.58 20.78 7.81 86.62 0.68 21.45 16 9 O -0.60 -26.76 14.81 -4.11 -0.06 -26.82 16 10 N -0.70 -23.54 5.32 -466.52 -2.48 -26.02 16 11 C 0.13 5.64 5.07 86.38 0.44 6.08 16 12 C 0.15 6.05 3.22 45.34 0.15 6.20 16 13 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 14 C -0.11 -3.61 6.10 31.78 0.19 -3.41 16 15 C -0.13 -4.75 7.09 31.99 0.23 -4.52 16 16 C 0.17 8.69 5.43 86.86 0.47 9.16 16 17 N -0.61 -31.94 3.13 -668.25 -2.09 -34.03 16 18 C -0.24 -13.96 9.77 84.03 0.82 -13.14 16 19 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 20 C -0.06 -3.49 5.47 84.86 0.46 -3.03 16 21 N -0.95 -58.36 10.53 21.65 0.23 -58.13 16 22 Si 0.97 47.50 29.55 68.60 2.03 49.53 16 23 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 24 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 25 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 26 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.07 1.96 6.47 -2.38 -0.02 1.94 16 29 H 0.21 0.75 8.06 -2.91 -0.02 0.73 16 30 H 0.16 2.35 7.70 -2.91 -0.02 2.33 16 31 H 0.41 10.62 7.46 -92.71 -0.69 9.93 16 32 H 0.03 1.44 7.92 -2.38 -0.02 1.42 16 33 H 0.03 1.58 8.08 -2.39 -0.02 1.56 16 34 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.06 2.05 7.81 -2.38 -0.02 2.03 16 36 H 0.07 2.42 8.14 -2.38 -0.02 2.41 16 37 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 38 H -0.01 -0.61 8.08 -2.39 -0.02 -0.63 16 39 H 0.04 2.24 6.85 -2.38 -0.02 2.22 16 40 H 0.25 14.89 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -79.98 328.68 1.64 -78.34 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -0.47 Total: 15.04 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: 5.56 Total: 10.20 kcal Atomic # 7 Polarization: -120.87 SS G_CDS: -5.42 Total: -126.29 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.06 Total: -26.82 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -79.98 1.64 -78.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027818375.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.377 kcal (2) G-P(sol) polarization free energy of solvation -79.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds