Wall clock time and date at job start Mon Mar 30 2020 02:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39834 * 126.45730 * 2 1 4 4 C 1.35456 * 107.86399 * 180.26733 * 3 2 1 5 5 N 1.35536 * 108.86996 * 359.73735 * 4 3 2 6 6 H 0.97008 * 125.67282 * 180.02562 * 5 4 3 7 7 C 1.37646 * 108.64456 * 0.02562 * 5 4 3 8 8 C 1.46683 * 126.23232 * 179.97438 * 7 5 4 9 9 O 1.21691 * 119.99617 * 180.02562 * 8 7 5 10 10 N 1.34778 * 119.99638 * 0.02562 * 8 7 5 11 11 C 1.46507 * 119.99341 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.46367 * 173.23228 * 11 10 8 13 13 H 1.08999 * 109.87545 * 57.33842 * 12 11 10 14 14 C 1.54330 * 109.87738 * 178.35241 * 12 11 10 15 15 C 1.55156 * 102.94109 * 141.60945 * 14 12 11 16 16 C 1.54913 * 101.58002 * 324.49736 * 15 14 12 17 17 N 1.47016 * 109.88099 * 296.15757 * 12 11 10 18 18 C 1.36937 * 125.64773 * 61.61948 * 17 12 11 19 19 H 1.08002 * 119.99541 * 324.42912 * 18 17 12 20 20 C 1.38811 * 120.00125 * 144.43751 * 18 17 12 21 21 N 1.31616 * 119.99816 * 162.69663 * 20 18 17 22 22 Si 1.86796 * 120.00263 * 342.69623 * 20 18 17 23 23 H 1.48496 * 109.47187 * 95.09653 * 22 20 18 24 24 H 1.48501 * 109.47341 * 215.10073 * 22 20 18 25 25 H 1.48504 * 109.46950 * 335.09619 * 22 20 18 26 26 H 1.08991 * 109.47340 * 270.17867 * 1 2 3 27 27 H 1.08999 * 109.47314 * 30.18292 * 1 2 3 28 28 H 1.09003 * 109.47231 * 150.18067 * 1 2 3 29 29 H 1.08003 * 126.07145 * 0.02562 * 3 2 1 30 30 H 1.08003 * 125.56169 * 179.76867 * 4 3 2 31 31 H 0.96994 * 120.00116 * 0.02562 * 10 8 7 32 32 H 1.08997 * 109.46987 * 53.23111 * 11 10 8 33 33 H 1.08997 * 109.46701 * 293.22924 * 11 10 8 34 34 H 1.08997 * 110.71924 * 259.97744 * 14 12 11 35 35 H 1.08997 * 110.71983 * 23.24920 * 14 12 11 36 36 H 1.08999 * 111.00167 * 82.57097 * 15 14 12 37 37 H 1.09006 * 111.00580 * 206.42722 * 15 14 12 38 38 H 1.08997 * 110.36641 * 278.16864 * 16 15 14 39 39 H 1.09007 * 110.36365 * 155.85084 * 16 15 14 40 40 H 0.97002 * 120.00323 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6217 0.6928 -0.0060 5 7 3.6283 -0.6625 -0.0039 6 1 4.4191 -1.2244 -0.0068 7 6 2.3262 -1.1089 0.0030 8 6 1.8898 -2.5093 0.0067 9 8 0.7026 -2.7765 0.0124 10 7 2.8037 -3.4999 0.0039 11 6 2.3677 -4.8986 0.0071 12 6 3.5829 -5.8118 -0.1671 13 1 4.3077 -5.6190 0.6238 14 6 3.1394 -7.2894 -0.1237 15 6 4.0381 -7.9536 -1.2000 16 6 4.1354 -6.8291 -2.2610 17 7 4.1987 -5.5793 -1.4817 18 6 4.7407 -4.3974 -1.9113 19 1 4.2947 -3.4596 -1.6148 20 6 5.8632 -4.4049 -2.7279 21 7 6.1852 -3.3286 -3.4136 22 14 6.9167 -5.9423 -2.8535 23 1 6.4924 -6.7380 -4.0333 24 1 8.3422 -5.5546 -3.0046 25 1 6.7530 -6.7565 -1.6224 26 1 -0.3633 0.0032 1.0276 27 1 -0.3634 0.8883 -0.5167 28 1 -0.3634 -0.8916 -0.5110 29 1 2.0136 2.1549 0.0004 30 1 4.4972 1.3253 -0.0111 31 1 3.7499 -3.2868 -0.0002 32 1 1.6689 -5.0632 -0.8131 33 1 1.8765 -5.1238 0.9537 34 1 3.3311 -7.7208 0.8587 35 1 2.0864 -7.3839 -0.3887 36 1 5.0207 -8.1941 -0.7943 37 1 3.5602 -8.8414 -1.6144 38 1 3.2526 -6.8333 -2.9003 39 1 5.0386 -6.9493 -2.8594 40 1 6.9694 -3.3338 -3.9846 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027856455.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:09 Heat of formation + Delta-G solvation = 32.234995 kcal Electronic energy + Delta-G solvation = -22098.094081 eV Core-core repulsion = 18914.166305 eV Total energy + Delta-G solvation = -3183.927776 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.98061 -38.85992 -37.72696 -34.15757 -32.76132 -32.15120 -30.11064 -30.06625 -28.82324 -26.59522 -24.99833 -23.85685 -21.76091 -20.83704 -20.13469 -19.87507 -18.72668 -18.24126 -16.79672 -16.29386 -15.39722 -15.10527 -14.98258 -14.54870 -13.96263 -13.50183 -13.35166 -13.34107 -13.00595 -12.69332 -12.55252 -12.38706 -12.30988 -12.02005 -11.97047 -11.42127 -11.34821 -11.29671 -10.98335 -10.76595 -10.54247 -10.25884 -9.94965 -9.63399 -9.43076 -8.71475 -8.49590 -8.48356 -7.80188 -6.95218 -6.13613 -3.58515 1.86643 3.01873 3.22445 3.35925 3.40723 3.46270 3.71842 3.88675 4.39665 4.83701 5.05590 5.25587 5.28016 5.33560 5.37032 5.44295 5.49546 5.59855 5.78967 5.88487 5.98443 6.04531 6.06649 6.10420 6.20192 6.21151 6.28792 6.34030 6.37565 6.50754 6.65455 6.78692 6.79899 6.95696 7.06610 7.26619 7.69421 7.75595 8.09237 8.16711 8.64932 8.72192 9.50637 10.10787 11.00202 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018918 B = 0.006068 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.716909 B = 4612.943294 C = 5778.848317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.087 4.087 3 C -0.218 4.218 4 C 0.023 3.977 5 N -0.531 5.531 6 H 0.422 0.578 7 C -0.048 4.048 8 C 0.584 3.416 9 O -0.547 6.547 10 N -0.709 5.709 11 C 0.118 3.882 12 C 0.143 3.857 13 H 0.047 0.953 14 C -0.121 4.121 15 C -0.136 4.136 16 C 0.118 3.882 17 N -0.601 5.601 18 C -0.258 4.258 19 H 0.087 0.913 20 C 0.034 3.966 21 N -0.901 5.901 22 Si 0.893 3.107 23 H -0.287 1.287 24 H -0.304 1.304 25 H -0.268 1.268 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.138 0.862 30 H 0.167 0.833 31 H 0.405 0.595 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.032 0.968 39 H 0.040 0.960 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.186 1.129 8.251 9.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 C -0.242 4.242 4 C -0.114 4.114 5 N -0.126 5.126 6 H 0.260 0.740 7 C -0.162 4.162 8 C 0.372 3.628 9 O -0.426 6.426 10 N -0.361 5.361 11 C -0.008 4.008 12 C 0.036 3.964 13 H 0.065 0.935 14 C -0.159 4.159 15 C -0.174 4.174 16 C -0.006 4.006 17 N -0.327 5.327 18 C -0.386 4.386 19 H 0.104 0.896 20 C -0.167 4.167 21 N -0.542 5.542 22 Si 0.724 3.276 23 H -0.215 1.215 24 H -0.232 1.232 25 H -0.193 1.193 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.156 0.844 30 H 0.185 0.815 31 H 0.243 0.757 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.050 0.950 39 H 0.058 0.942 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.736 0.935 8.109 9.437 hybrid contribution 1.736 -0.837 -0.420 1.972 sum -3.000 0.098 7.688 8.253 Atomic orbital electron populations 1.20273 0.89705 1.02585 1.01641 1.19854 0.95639 0.90864 1.03249 1.20698 0.91903 0.98449 1.13197 1.21944 0.99358 0.83202 1.06854 1.42056 1.07558 1.07317 1.55696 0.74034 1.20328 0.83733 0.93787 1.18334 1.17068 0.85913 0.83201 0.76660 1.90734 1.16232 1.83535 1.52053 1.46086 1.10035 1.06311 1.73698 1.21933 0.98187 0.80257 1.00425 1.21286 0.92754 0.92309 0.90089 0.93528 1.22487 0.99673 0.94848 0.98920 1.22780 0.99630 0.97786 0.97224 1.21888 0.98641 0.86427 0.93671 1.44657 1.69573 1.08870 1.09616 1.18600 1.06348 0.83880 1.29752 0.89602 1.25430 0.96735 0.96624 0.97930 1.69804 1.27461 1.28959 1.27989 0.86653 0.79055 0.83642 0.78254 1.21522 1.23204 1.19335 0.92075 0.92461 0.90257 0.84413 0.81527 0.75688 0.91481 0.92767 0.91358 0.91162 0.91589 0.91478 0.95028 0.94187 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 9.83 36.00 0.35 -0.92 16 2 C -0.09 -1.46 6.21 -104.16 -0.65 -2.11 16 3 C -0.22 -3.12 10.76 -39.98 -0.43 -3.55 16 4 C 0.02 0.32 11.89 -16.91 -0.20 0.11 16 5 N -0.53 -8.25 5.99 -9.39 -0.06 -8.31 16 6 H 0.42 6.16 8.19 -40.82 -0.33 5.83 16 7 C -0.05 -0.87 7.06 -81.98 -0.58 -1.44 16 8 C 0.58 11.51 7.79 -12.85 -0.10 11.41 16 9 O -0.55 -11.83 14.78 5.20 0.08 -11.75 16 10 N -0.71 -13.32 4.33 -61.61 -0.27 -13.59 16 11 C 0.12 2.12 5.16 -4.04 -0.02 2.10 16 12 C 0.14 2.59 3.31 -66.95 -0.22 2.37 16 13 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 14 C -0.12 -1.80 6.48 -24.89 -0.16 -1.96 16 15 C -0.14 -2.20 7.09 -24.58 -0.17 -2.38 16 16 C 0.12 2.44 6.19 -2.53 -0.02 2.42 16 17 N -0.60 -13.32 2.68 -162.57 -0.44 -13.76 16 18 C -0.26 -6.60 9.51 -15.06 -0.14 -6.74 16 19 H 0.09 2.25 5.49 -52.49 -0.29 1.96 16 20 C 0.03 0.92 5.45 -17.43 -0.10 0.83 16 21 N -0.90 -25.87 13.97 55.49 0.78 -25.09 16 22 Si 0.89 21.51 24.78 -169.99 -4.21 17.30 16 23 H -0.29 -6.93 6.87 56.52 0.39 -6.54 16 24 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 25 H -0.27 -6.24 6.99 56.52 0.40 -5.85 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 1.35 6.49 -51.93 -0.34 1.02 16 29 H 0.14 1.61 8.06 -52.48 -0.42 1.19 16 30 H 0.17 1.67 8.06 -52.48 -0.42 1.25 16 31 H 0.41 7.56 5.43 -40.82 -0.22 7.33 16 32 H 0.07 1.34 8.11 -51.93 -0.42 0.92 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.98 7.85 -51.93 -0.41 0.57 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.04 0.90 3.18 -51.92 -0.17 0.73 16 40 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 318.52 15.07 4.80 4.80 Total: -1.00 -31.19 318.52 -7.31 -38.50 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -5.56 Total: 11.75 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -2.43 Total: 0.14 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: 0.02 Total: -60.74 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.08 Total: -11.75 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.21 Total: 17.30 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.19 -7.31 -38.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027856455.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.737 kcal (2) G-P(sol) polarization free energy of solvation -31.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds