Wall clock time and date at job start Mon Mar 30 2020 02:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39834 * 126.45730 * 2 1 4 4 C 1.35456 * 107.86399 * 180.26733 * 3 2 1 5 5 N 1.35536 * 108.86996 * 359.73735 * 4 3 2 6 6 H 0.97008 * 125.67282 * 180.02562 * 5 4 3 7 7 C 1.37646 * 108.64456 * 0.02562 * 5 4 3 8 8 C 1.46683 * 126.23232 * 179.97438 * 7 5 4 9 9 O 1.21691 * 119.99617 * 180.02562 * 8 7 5 10 10 N 1.34778 * 119.99638 * 0.02562 * 8 7 5 11 11 C 1.46507 * 119.99341 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.46367 * 173.23228 * 11 10 8 13 13 H 1.08999 * 109.87545 * 57.33842 * 12 11 10 14 14 C 1.54330 * 109.87738 * 178.35241 * 12 11 10 15 15 C 1.55156 * 102.94109 * 141.60945 * 14 12 11 16 16 C 1.54913 * 101.58002 * 324.49736 * 15 14 12 17 17 N 1.47016 * 109.88099 * 296.15757 * 12 11 10 18 18 C 1.36937 * 125.64773 * 61.61948 * 17 12 11 19 19 H 1.08002 * 119.99541 * 324.42912 * 18 17 12 20 20 C 1.38811 * 120.00125 * 144.43751 * 18 17 12 21 21 N 1.31616 * 119.99816 * 162.69663 * 20 18 17 22 22 Si 1.86796 * 120.00263 * 342.69623 * 20 18 17 23 23 H 1.48496 * 109.47187 * 95.09653 * 22 20 18 24 24 H 1.48501 * 109.47341 * 215.10073 * 22 20 18 25 25 H 1.48504 * 109.46950 * 335.09619 * 22 20 18 26 26 H 1.08991 * 109.47340 * 270.17867 * 1 2 3 27 27 H 1.08999 * 109.47314 * 30.18292 * 1 2 3 28 28 H 1.09003 * 109.47231 * 150.18067 * 1 2 3 29 29 H 1.08003 * 126.07145 * 0.02562 * 3 2 1 30 30 H 1.08003 * 125.56169 * 179.76867 * 4 3 2 31 31 H 0.96994 * 120.00116 * 0.02562 * 10 8 7 32 32 H 1.08997 * 109.46987 * 53.23111 * 11 10 8 33 33 H 1.08997 * 109.46701 * 293.22924 * 11 10 8 34 34 H 1.08997 * 110.71924 * 259.97744 * 14 12 11 35 35 H 1.08997 * 110.71983 * 23.24920 * 14 12 11 36 36 H 1.08999 * 111.00167 * 82.57097 * 15 14 12 37 37 H 1.09006 * 111.00580 * 206.42722 * 15 14 12 38 38 H 1.08997 * 110.36641 * 278.16864 * 16 15 14 39 39 H 1.09007 * 110.36365 * 155.85084 * 16 15 14 40 40 H 0.97002 * 120.00323 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6217 0.6928 -0.0060 5 7 3.6283 -0.6625 -0.0039 6 1 4.4191 -1.2244 -0.0068 7 6 2.3262 -1.1089 0.0030 8 6 1.8898 -2.5093 0.0067 9 8 0.7026 -2.7765 0.0124 10 7 2.8037 -3.4999 0.0039 11 6 2.3677 -4.8986 0.0071 12 6 3.5829 -5.8118 -0.1671 13 1 4.3077 -5.6190 0.6238 14 6 3.1394 -7.2894 -0.1237 15 6 4.0381 -7.9536 -1.2000 16 6 4.1354 -6.8291 -2.2610 17 7 4.1987 -5.5793 -1.4817 18 6 4.7407 -4.3974 -1.9113 19 1 4.2947 -3.4596 -1.6148 20 6 5.8632 -4.4049 -2.7279 21 7 6.1852 -3.3286 -3.4136 22 14 6.9167 -5.9423 -2.8535 23 1 6.4924 -6.7380 -4.0333 24 1 8.3422 -5.5546 -3.0046 25 1 6.7530 -6.7565 -1.6224 26 1 -0.3633 0.0032 1.0276 27 1 -0.3634 0.8883 -0.5167 28 1 -0.3634 -0.8916 -0.5110 29 1 2.0136 2.1549 0.0004 30 1 4.4972 1.3253 -0.0111 31 1 3.7499 -3.2868 -0.0002 32 1 1.6689 -5.0632 -0.8131 33 1 1.8765 -5.1238 0.9537 34 1 3.3311 -7.7208 0.8587 35 1 2.0864 -7.3839 -0.3887 36 1 5.0207 -8.1941 -0.7943 37 1 3.5602 -8.8414 -1.6144 38 1 3.2526 -6.8333 -2.9003 39 1 5.0386 -6.9493 -2.8594 40 1 6.9694 -3.3338 -3.9846 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027856455.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:09 Heat of formation + Delta-G solvation = 11.281634 kcal Electronic energy + Delta-G solvation = -22099.002687 eV Core-core repulsion = 18914.166305 eV Total energy + Delta-G solvation = -3184.836382 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.21942 -40.34099 -39.24848 -35.65509 -34.66453 -33.38310 -31.80088 -31.48735 -30.11636 -27.86309 -26.58345 -25.52212 -23.18079 -22.19137 -21.43450 -21.35070 -20.16959 -19.56997 -18.52508 -17.94623 -16.87199 -16.64199 -16.42508 -16.03063 -15.47049 -14.98636 -14.79920 -14.76617 -14.51119 -14.17250 -13.86759 -13.82930 -13.62231 -13.55237 -13.15191 -13.07166 -12.97636 -12.65179 -12.51697 -12.28419 -12.06435 -11.77069 -11.53636 -11.39679 -10.93437 -10.70768 -10.03813 -9.66434 -9.06155 -8.78083 -8.19118 -5.59771 0.53682 1.29635 1.38805 1.49749 1.87497 2.20713 2.33158 2.43336 2.45576 3.02712 3.33330 3.88130 3.95311 3.98005 4.11860 4.26653 4.26905 4.32645 4.42420 4.46065 4.65450 4.71790 4.83878 4.89491 4.92145 4.96572 4.98928 5.03827 5.12365 5.19603 5.29019 5.45007 5.46959 5.53683 5.82584 5.86577 6.05326 6.16215 6.51412 6.63904 6.79186 7.21178 7.52817 8.19874 8.97628 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018918 B = 0.006068 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.716909 B = 4612.943294 C = 5778.848317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.097 4.097 3 C -0.225 4.225 4 C 0.038 3.962 5 N -0.534 5.534 6 H 0.422 0.578 7 C -0.091 4.091 8 C 0.577 3.423 9 O -0.576 6.576 10 N -0.710 5.710 11 C 0.121 3.879 12 C 0.140 3.860 13 H 0.052 0.948 14 C -0.110 4.110 15 C -0.125 4.125 16 C 0.104 3.896 17 N -0.617 5.617 18 C -0.240 4.240 19 H 0.072 0.928 20 C -0.022 4.022 21 N -0.946 5.946 22 Si 0.948 3.052 23 H -0.292 1.292 24 H -0.314 1.314 25 H -0.253 1.253 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.052 0.948 29 H 0.168 0.832 30 H 0.207 0.793 31 H 0.405 0.595 32 H 0.044 0.956 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.027 0.973 39 H 0.022 0.978 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.214 0.500 9.749 10.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.107 4.107 3 C -0.248 4.248 4 C -0.099 4.099 5 N -0.129 5.129 6 H 0.261 0.739 7 C -0.204 4.204 8 C 0.367 3.633 9 O -0.458 6.458 10 N -0.361 5.361 11 C -0.004 4.004 12 C 0.034 3.966 13 H 0.070 0.930 14 C -0.148 4.148 15 C -0.163 4.163 16 C -0.020 4.020 17 N -0.343 5.343 18 C -0.370 4.370 19 H 0.089 0.911 20 C -0.218 4.218 21 N -0.591 5.591 22 Si 0.779 3.221 23 H -0.220 1.220 24 H -0.243 1.243 25 H -0.177 1.177 26 H 0.089 0.911 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.185 0.815 30 H 0.224 0.776 31 H 0.242 0.758 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.121 0.879 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.117 0.883 38 H 0.045 0.955 39 H 0.040 0.960 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.778 0.260 9.639 10.761 hybrid contribution 1.657 -0.549 -0.868 1.950 sum -3.120 -0.289 8.771 9.314 Atomic orbital electron populations 1.20266 0.89075 1.02391 1.02193 1.20299 0.96510 0.91488 1.02355 1.21082 0.91664 0.99179 1.12913 1.22704 1.00760 0.82538 1.03929 1.42123 1.06816 1.08219 1.55750 0.73942 1.20265 0.85161 0.93264 1.21691 1.17406 0.85643 0.84189 0.76107 1.90698 1.17208 1.84187 1.53671 1.46122 1.09858 1.06653 1.73466 1.21926 0.97886 0.80021 1.00566 1.21503 0.92332 0.94778 0.88031 0.93014 1.22524 1.00043 0.91870 1.00410 1.22750 1.00422 0.97202 0.95934 1.22064 0.97461 0.87510 0.94942 1.44834 1.69332 1.08416 1.11768 1.18709 1.05352 0.85019 1.27878 0.91074 1.25985 0.98290 0.98870 0.98679 1.69920 1.28257 1.30990 1.29894 0.85758 0.76877 0.80933 0.78533 1.21970 1.24327 1.17672 0.91131 0.90038 0.92925 0.81471 0.77646 0.75787 0.93796 0.90611 0.87947 0.89939 0.91500 0.88306 0.95538 0.96050 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.44 9.83 71.23 0.70 -1.74 16 2 C -0.10 -3.19 6.21 -19.57 -0.12 -3.32 16 3 C -0.22 -5.94 10.76 22.01 0.24 -5.70 16 4 C 0.04 0.95 11.89 83.48 0.99 1.94 16 5 N -0.53 -16.41 5.99 -183.61 -1.10 -17.51 16 6 H 0.42 12.47 8.19 -92.70 -0.76 11.71 16 7 C -0.09 -3.31 7.06 40.35 0.28 -3.03 16 8 C 0.58 23.38 7.79 86.45 0.67 24.06 16 9 O -0.58 -25.72 14.78 -4.32 -0.06 -25.78 16 10 N -0.71 -27.06 4.33 -467.06 -2.02 -29.09 16 11 C 0.12 4.30 5.16 86.38 0.45 4.75 16 12 C 0.14 4.80 3.31 45.35 0.15 4.95 16 13 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 14 C -0.11 -2.86 6.48 31.78 0.21 -2.66 16 15 C -0.13 -3.60 7.09 31.99 0.23 -3.37 16 16 C 0.10 4.15 6.19 86.86 0.54 4.69 16 17 N -0.62 -26.89 2.68 -668.24 -1.79 -28.68 16 18 C -0.24 -12.43 9.51 84.03 0.80 -11.63 16 19 H 0.07 3.84 5.49 -2.91 -0.02 3.82 16 20 C -0.02 -1.19 5.45 84.86 0.46 -0.72 16 21 N -0.95 -55.85 13.97 21.65 0.30 -55.55 16 22 Si 0.95 44.87 24.78 68.60 1.70 46.57 16 23 H -0.29 -13.81 6.87 99.48 0.68 -13.12 16 24 H -0.31 -15.21 7.11 99.48 0.71 -14.50 16 25 H -0.25 -11.11 6.99 99.48 0.70 -10.41 16 26 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 28 H 0.05 1.84 6.49 -2.39 -0.02 1.83 16 29 H 0.17 3.33 8.06 -2.91 -0.02 3.31 16 30 H 0.21 3.39 8.06 -2.91 -0.02 3.37 16 31 H 0.40 15.40 5.43 -92.71 -0.50 14.90 16 32 H 0.04 1.76 8.11 -2.39 -0.02 1.74 16 33 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.08 1.98 7.85 -2.39 -0.02 1.96 16 36 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 38 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.02 0.94 3.18 -2.38 -0.01 0.93 16 40 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -69.43 318.52 2.39 -67.04 By element: Atomic # 1 Polarization: 35.00 SS G_CDS: -0.23 Total: 34.78 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 5.59 Total: 8.22 kcal Atomic # 7 Polarization: -126.21 SS G_CDS: -4.61 Total: -130.82 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.06 Total: -25.78 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.70 Total: 46.57 kcal Total: -69.43 2.39 -67.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027856455.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.322 kcal (2) G-P(sol) polarization free energy of solvation -69.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds